Gvermi8724.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8724.t1
Unique NameGvermi8724.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3737contigScGOVlb_3737:2..330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1391647.AVSV01000028_gene233
Preferred namedeoC
PFAMsDeoC
Max annot lvl186801|Clostridia
KEGG rclassRC00436,RC00437
KEGG koko:K01619
KEGG ReactionR01066
KEGG Pathwayko00030,map00030
Evalue1.03e-22
EggNOG OGsCOG0274@1|root,COG0274@2|Bacteria,1TPAJ@1239|Firmicutes,249XB@186801|Clostridia,36DTB@31979|Clostridiaceae
EC4.1.2.4
DescriptionCatalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8724Gvermi8724Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3737 2..330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8724.t1.CDS1Gvermi8724.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3737 2..330 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8724.t1.exon1Gvermi8724.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3737 2..330 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8724.t1.stop1Gvermi8724.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3737 328..330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8724.t1Gvermi8724.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3737 2..330 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8724.t1 ID=Gvermi8724.t1|Name=Gvermi8724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=110bp
XLLNDEEKAAVCKISALVGADFVKTSTGFSTGGATIDDIKLMHGNVRTLT
EVVPIDEANIKQVQVKASGGIKTAEEAVEMLRNGATRIGTSRAANWCSGS
EAQKSDPAY*
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spliced messenger RNA

>Gvermi8724.t1 ID=Gvermi8724.t1|Name=Gvermi8724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=329bp|location=Sequence derived from alignment at ScGOVlb_3737:2..330+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GTCTTCTCAACGATGAAGAGAAGGCTGCGGTGTGCAAAATCTCAGCCCTC
GTTGGAGCTGACTTTGTCAAGACATCTACTGGATTCTCGACCGGCGGGGC
CACGATCGATGACATAAAGCTTATGCACGGCAATGTAAGAACCCTCACGG
AGGTGGTTCCTATCGATGAAGCAAACATCAAGCAAGTTCAAGTCAAGGCG
AGCGGTGGAATCAAGACTGCTGAGGAGGCTGTCGAAATGCTGCGAAACGG
GGCCACGCGAATTGGTACGTCACGTGCAGCAAACTGGTGCTCAGGCTCGG
AAGCGCAAAAGTCCGACCCCGCATACTAG
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protein sequence of Gvermi8724.t1

>Gvermi8724.t1 ID=Gvermi8724.t1|Name=Gvermi8724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=110bp
XLLNDEEKAAVCKISALVGADFVKTSTGFSTGGATIDDIKLMHGNVRTLT
EVVPIDEANIKQVQVKASGGIKTAEEAVEMLRNGATRIGTSRAANWCSGS
EAQKSDPAY*
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mRNA from alignment at ScGOVlb_3737:2..330+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8724.t1 ID=Gvermi8724.t1|Name=Gvermi8724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=329bp|location=Sequence derived from alignment at ScGOVlb_3737:2..330+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GTCTTCTCAACGATGAAGAGAAGGCTGCGGTGTGCAAAATCTCAGCCCTC
GTTGGAGCTGACTTTGTCAAGACATCTACTGGATTCTCGACCGGCGGGGC
CACGATCGATGACATAAAGCTTATGCACGGCAATGTAAGAACCCTCACGG
AGGTGGTTCCTATCGATGAAGCAAACATCAAGCAAGTTCAAGTCAAGGCG
AGCGGTGGAATCAAGACTGCTGAGGAGGCTGTCGAAATGCTGCGAAACGG
GGCCACGCGAATTGGTACGTCACGTGCAGCAAACTGGTGCTCAGGCTCGG
AAGCGCAAAAGTCCGACCCCGCATACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3737:2..330+

>Gvermi8724.t1 ID=Gvermi8724.t1|Name=Gvermi8724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=329bp|location=Sequence derived from alignment at ScGOVlb_3737:2..330+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GTCTTCTCAACGATGAAGAGAAGGCTGCGGTGTGCAAAATCTCAGCCCTC
GTTGGAGCTGACTTTGTCAAGACATCTACTGGATTCTCGACCGGCGGGGC
CACGATCGATGACATAAAGCTTATGCACGGCAATGTAAGAACCCTCACGG
AGGTGGTTCCTATCGATGAAGCAAACATCAAGCAAGTTCAAGTCAAGGCG
AGCGGTGGAATCAAGACTGCTGAGGAGGCTGTCGAAATGCTGCGAAACGG
GGCCACGCGAATTGGTACGTCACGTGCAGCAAACTGGTGCTCAGGCTCGG
AAGCGCAAAAGTCCGACCCCGCATACTAG
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