Gvermi760.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi760.t1
Unique NameGvermi760.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3533contigScGOVlb_3533:110..1099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi760Gvermi760Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3533 110..1099 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi760.t1.stop1Gvermi760.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3533 110..112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi760.t1.CDS1Gvermi760.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3533 110..1099 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi760.t1.exon1Gvermi760.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3533 110..1099 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi760.t1.start1Gvermi760.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3533 1097..1099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi760.t1Gvermi760.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3533 110..1099 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi760.t1 ID=Gvermi760.t1|Name=Gvermi760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp
MSVQKTLKMRDAVSAPLRAKVGSGSVSMRLSSSGAIVRVHQQHRAAHEKF
ETAVAAADNDDTIMLADSVTKGKLTSGNADSSNGGALAMAVLGCLAIAGL
CVLGRRPALRAYEQHKLERDQTKTAKLLAADREAAGINTDWYGSVELVET
NNFSSSKANKWGWGGKNKQGGGKRGNFSEDFNDVMTMDVNPTNAVSGHTL
MSQQSIFDLNIAEQDAYSKIGKDGKHGRVGLQPSRSQRKHGRNKTSDVLR
QTKRGHRAKTSSTDSNMRASPRGTPRVSRETDERGGKSSSATKASGRATA
ASGQVGNRATTATSGRGSPGTSRNTRARY*
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spliced messenger RNA

>Gvermi760.t1 ID=Gvermi760.t1|Name=Gvermi760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_3533:110..1099- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTGCAAAAGACACTCAAGATGCGCGATGCCGTATCGGCGCCGCT
CCGCGCCAAAGTGGGCTCGGGGTCGGTGTCGATGCGGCTGTCGTCGTCGG
GTGCCATCGTGCGTGTGCATCAGCAGCACCGCGCGGCACATGAGAAGTTC
GAGACTGCCGTCGCCGCCGCTGACAACGACGACACCATCATGCTGGCGGA
CTCAGTCACCAAGGGCAAACTGACGAGCGGCAACGCCGACTCGTCCAACG
GCGGCGCGCTGGCGATGGCGGTGCTCGGCTGTCTGGCTATCGCTGGGCTC
TGTGTGCTCGGGCGTCGCCCAGCGCTGCGTGCGTATGAACAACACAAACT
CGAGCGCGACCAGACGAAAACAGCCAAGCTGCTGGCGGCCGACCGCGAGG
CTGCCGGCATCAATACCGATTGGTACGGTTCCGTCGAGTTGGTCGAAACG
AACAACTTTTCGTCGTCGAAGGCCAATAAGTGGGGCTGGGGCGGCAAGAA
CAAGCAAGGCGGTGGCAAGCGCGGTAACTTCAGCGAAGATTTCAACGACG
TGATGACGATGGACGTCAACCCCACCAACGCCGTGTCGGGGCACACGCTT
ATGTCGCAGCAGAGTATCTTCGACCTGAACATCGCGGAACAGGACGCATA
CTCGAAAATCGGCAAGGACGGGAAGCACGGCAGGGTGGGGCTGCAGCCGA
GCAGAAGTCAACGGAAACACGGGCGCAACAAGACGTCGGACGTGTTGCGT
CAAACGAAACGCGGCCACCGCGCCAAGACGAGCAGCACCGACAGCAACAT
GCGCGCATCACCACGTGGCACGCCGCGCGTGTCGCGCGAGACGGATGAGC
GCGGCGGCAAGAGCAGCTCCGCGACAAAGGCATCGGGTCGTGCCACGGCG
GCGTCGGGTCAGGTGGGCAACCGCGCCACTACGGCGACGTCGGGTCGCGG
GTCGCCCGGCACGTCACGCAACACGCGGGCGCGCTACTGA
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protein sequence of Gvermi760.t1

>Gvermi760.t1 ID=Gvermi760.t1|Name=Gvermi760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MSVQKTLKMRDAVSAPLRAKVGSGSVSMRLSSSGAIVRVHQQHRAAHEKF
ETAVAAADNDDTIMLADSVTKGKLTSGNADSSNGGALAMAVLGCLAIAGL
CVLGRRPALRAYEQHKLERDQTKTAKLLAADREAAGINTDWYGSVELVET
NNFSSSKANKWGWGGKNKQGGGKRGNFSEDFNDVMTMDVNPTNAVSGHTL
MSQQSIFDLNIAEQDAYSKIGKDGKHGRVGLQPSRSQRKHGRNKTSDVLR
QTKRGHRAKTSSTDSNMRASPRGTPRVSRETDERGGKSSSATKASGRATA
ASGQVGNRATTATSGRGSPGTSRNTRARY*
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mRNA from alignment at ScGOVlb_3533:110..1099-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi760.t1 ID=Gvermi760.t1|Name=Gvermi760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_3533:110..1099- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGTGCAAAAGACACTCAAGATGCGCGATGCCGTATCGGCGCCGCT
CCGCGCCAAAGTGGGCTCGGGGTCGGTGTCGATGCGGCTGTCGTCGTCGG
GTGCCATCGTGCGTGTGCATCAGCAGCACCGCGCGGCACATGAGAAGTTC
GAGACTGCCGTCGCCGCCGCTGACAACGACGACACCATCATGCTGGCGGA
CTCAGTCACCAAGGGCAAACTGACGAGCGGCAACGCCGACTCGTCCAACG
GCGGCGCGCTGGCGATGGCGGTGCTCGGCTGTCTGGCTATCGCTGGGCTC
TGTGTGCTCGGGCGTCGCCCAGCGCTGCGTGCGTATGAACAACACAAACT
CGAGCGCGACCAGACGAAAACAGCCAAGCTGCTGGCGGCCGACCGCGAGG
CTGCCGGCATCAATACCGATTGGTACGGTTCCGTCGAGTTGGTCGAAACG
AACAACTTTTCGTCGTCGAAGGCCAATAAGTGGGGCTGGGGCGGCAAGAA
CAAGCAAGGCGGTGGCAAGCGCGGTAACTTCAGCGAAGATTTCAACGACG
TGATGACGATGGACGTCAACCCCACCAACGCCGTGTCGGGGCACACGCTT
ATGTCGCAGCAGAGTATCTTCGACCTGAACATCGCGGAACAGGACGCATA
CTCGAAAATCGGCAAGGACGGGAAGCACGGCAGGGTGGGGCTGCAGCCGA
GCAGAAGTCAACGGAAACACGGGCGCAACAAGACGTCGGACGTGTTGCGT
CAAACGAAACGCGGCCACCGCGCCAAGACGAGCAGCACCGACAGCAACAT
GCGCGCATCACCACGTGGCACGCCGCGCGTGTCGCGCGAGACGGATGAGC
GCGGCGGCAAGAGCAGCTCCGCGACAAAGGCATCGGGTCGTGCCACGGCG
GCGTCGGGTCAGGTGGGCAACCGCGCCACTACGGCGACGTCGGGTCGCGG
GTCGCCCGGCACGTCACGCAACACGCGGGCGCGCTACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3533:110..1099-

>Gvermi760.t1 ID=Gvermi760.t1|Name=Gvermi760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=990bp|location=Sequence derived from alignment at ScGOVlb_3533:110..1099- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGTGCAAAAGACACTCAAGATGCGCGATGCCGTATCGGCGCCGCT
CCGCGCCAAAGTGGGCTCGGGGTCGGTGTCGATGCGGCTGTCGTCGTCGG
GTGCCATCGTGCGTGTGCATCAGCAGCACCGCGCGGCACATGAGAAGTTC
GAGACTGCCGTCGCCGCCGCTGACAACGACGACACCATCATGCTGGCGGA
CTCAGTCACCAAGGGCAAACTGACGAGCGGCAACGCCGACTCGTCCAACG
GCGGCGCGCTGGCGATGGCGGTGCTCGGCTGTCTGGCTATCGCTGGGCTC
TGTGTGCTCGGGCGTCGCCCAGCGCTGCGTGCGTATGAACAACACAAACT
CGAGCGCGACCAGACGAAAACAGCCAAGCTGCTGGCGGCCGACCGCGAGG
CTGCCGGCATCAATACCGATTGGTACGGTTCCGTCGAGTTGGTCGAAACG
AACAACTTTTCGTCGTCGAAGGCCAATAAGTGGGGCTGGGGCGGCAAGAA
CAAGCAAGGCGGTGGCAAGCGCGGTAACTTCAGCGAAGATTTCAACGACG
TGATGACGATGGACGTCAACCCCACCAACGCCGTGTCGGGGCACACGCTT
ATGTCGCAGCAGAGTATCTTCGACCTGAACATCGCGGAACAGGACGCATA
CTCGAAAATCGGCAAGGACGGGAAGCACGGCAGGGTGGGGCTGCAGCCGA
GCAGAAGTCAACGGAAACACGGGCGCAACAAGACGTCGGACGTGTTGCGT
CAAACGAAACGCGGCCACCGCGCCAAGACGAGCAGCACCGACAGCAACAT
GCGCGCATCACCACGTGGCACGCCGCGCGTGTCGCGCGAGACGGATGAGC
GCGGCGGCAAGAGCAGCTCCGCGACAAAGGCATCGGGTCGTGCCACGGCG
GCGTCGGGTCAGGTGGGCAACCGCGCCACTACGGCGACGTCGGGTCGCGG
GTCGCCCGGCACGTCACGCAACACGCGGGCGCGCTACTGA
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