Gvermi7274.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7274.t1
Unique NameGvermi7274.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3476contigScGOVlb_3476:352..1090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7274Gvermi7274Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3476 352..1090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7274.t1Gvermi7274.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3476 352..1090 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7274.t1.stop1Gvermi7274.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3476 352..354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7274.t1.CDS1Gvermi7274.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3476 352..467 -
Gvermi7274.t1.CDS2Gvermi7274.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3476 557..752 -
Gvermi7274.t1.CDS3Gvermi7274.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3476 823..908 -
Gvermi7274.t1.CDS4Gvermi7274.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3476 985..1090 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7274.t1.exon1Gvermi7274.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3476 352..467 -
Gvermi7274.t1.exon2Gvermi7274.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3476 557..752 -
Gvermi7274.t1.exon3Gvermi7274.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3476 823..908 -
Gvermi7274.t1.exon4Gvermi7274.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3476 985..1090 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7274.t1.intron1Gvermi7274.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3476 468..556 -
Gvermi7274.t1.intron2Gvermi7274.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3476 753..822 -
Gvermi7274.t1.intron3Gvermi7274.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3476 909..984 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7274.t1.start1Gvermi7274.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3476 1088..1090 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7274.t1 ID=Gvermi7274.t1|Name=Gvermi7274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=168bp
MGPWLSCAVRIDKELTALEGAVRQDMAGLNPSPSAGGKPCRRALTPSHAL
AGSCRPSQIEHMQEEWQDYSQAETAHQRHHWHTTAAPAPHDALCITATMG
AALQLSNHDTAVSATRSSSCSLQVLTICFACTASCHSCERTVPLGRRTLH
ARSHSCRPIRQHAELQT*
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spliced messenger RNA

>Gvermi7274.t1 ID=Gvermi7274.t1|Name=Gvermi7274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp|location=Sequence derived from alignment at ScGOVlb_3476:352..1090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCCGTGGCTGTCGTGCGCTGTGCGCATCGACAAGGAGCTGACGGC
ACTGGAGGGCGCTGTGCGCCAAGACATGGCCGGCCTGAACCCGAGCCCCT
CTGCTGGAGGAAAACCGTGCAGGCGTGCACTCACACCGTCACACGCTCTT
GCCGGCAGTTGCCGGCCATCTCAGATTGAGCACATGCAAGAGGAGTGGCA
GGACTACAGTCAGGCCGAGACAGCGCACCAGCGGCACCACTGGCACACTA
CTGCGGCACCAGCGCCACATGATGCACTTTGCATCACCGCAACGATGGGT
GCAGCACTGCAGCTGTCGAACCATGACACTGCGGTCTCCGCCACGCGCAG
CTCAAGCTGCAGCCTGCAGGTACTGACCATTTGCTTCGCCTGCACTGCAT
CGTGTCACTCGTGTGAGCGCACAGTCCCGTTGGGCCGTCGCACGCTACAT
GCTCGCAGCCACTCTTGCCGCCCCATACGACAGCATGCAGAGTTGCAGAC
ATGA
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protein sequence of Gvermi7274.t1

>Gvermi7274.t1 ID=Gvermi7274.t1|Name=Gvermi7274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
MGPWLSCAVRIDKELTALEGAVRQDMAGLNPSPSAGGKPCRRALTPSHAL
AGSCRPSQIEHMQEEWQDYSQAETAHQRHHWHTTAAPAPHDALCITATMG
AALQLSNHDTAVSATRSSSCSLQVLTICFACTASCHSCERTVPLGRRTLH
ARSHSCRPIRQHAELQT*
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mRNA from alignment at ScGOVlb_3476:352..1090-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7274.t1 ID=Gvermi7274.t1|Name=Gvermi7274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=739bp|location=Sequence derived from alignment at ScGOVlb_3476:352..1090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCCGTGGCTGTCGTGCGCTGTGCGCATCGACAAGGAGCTGACGGC
ACTGGAGGGCGCTGTGCGCCAAGACATGGCCGGCCTGAACCCGAGCCCCT
CTGCTGGTACCCGCCATGACATGTGAATGCTGCTCGGTGTGCTCACTGCT
CACTAGTACTGTGCTGCGAGCCTGCGAGGCAGGAGGAAAACCGTGCAGGC
GTGCACTCACACCGTCACACGCTCTTGCCGGCAGTTGCCGGCCATCTCAG
ATTGAGCACATGCAAGAGGTGGCTGCTCCGCTGGGCGCTGGTGGTTCCAT
GATGGTGTAAGCTTACCGCGCTGCTGATCTATTCACAGGAGTGGCAGGAC
TACAGTCAGGCCGAGACAGCGCACCAGCGGCACCACTGGCACACTACTGC
GGCACCAGCGCCACATGATGCACTTTGCATCACCGCAACGATGGGTGCAG
CACTGCAGCTGTCGAACCATGACACTGCGGTCTCCGCCACGCGCAGCTCA
AGCTGCAGCCTGCAGGTACTGACCATTTGCTTCGGTACGTTGCACCACAC
GCCCGCCTCCACGAGCGCGCGCACATGACAAAGAACTAACTCAAAGACCT
GGCTGCTGCTGCATCGCTTACAGCCTGCACTGCATCGTGTCACTCGTGTG
AGCGCACAGTCCCGTTGGGCCGTCGCACGCTACATGCTCGCAGCCACTCT
TGCCGCCCCATACGACAGCATGCAGAGTTGCAGACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3476:352..1090-

>Gvermi7274.t1 ID=Gvermi7274.t1|Name=Gvermi7274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=504bp|location=Sequence derived from alignment at ScGOVlb_3476:352..1090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCCGTGGCTGTCGTGCGCTGTGCGCATCGACAAGGAGCTGACGGC
ACTGGAGGGCGCTGTGCGCCAAGACATGGCCGGCCTGAACCCGAGCCCCT
CTGCTGGAGGAAAACCGTGCAGGCGTGCACTCACACCGTCACACGCTCTT
GCCGGCAGTTGCCGGCCATCTCAGATTGAGCACATGCAAGAGGAGTGGCA
GGACTACAGTCAGGCCGAGACAGCGCACCAGCGGCACCACTGGCACACTA
CTGCGGCACCAGCGCCACATGATGCACTTTGCATCACCGCAACGATGGGT
GCAGCACTGCAGCTGTCGAACCATGACACTGCGGTCTCCGCCACGCGCAG
CTCAAGCTGCAGCCTGCAGGTACTGACCATTTGCTTCGCCTGCACTGCAT
CGTGTCACTCGTGTGAGCGCACAGTCCCGTTGGGCCGTCGCACGCTACAT
GCTCGCAGCCACTCTTGCCGCCCCATACGACAGCATGCAGAGTTGCAGAC
ATGA
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