Gvermi12289.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12289.t1
Unique NameGvermi12289.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length220
Homology
BLAST of Gvermi12289.t1 vs. uniprot
Match: A0A2V3J1H9_9FLOR (Vacuolar protein sorting-associated protein 37A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H9_9FLOR)

HSP 1 Score: 281 bits (720), Expect = 4.980e-93
Identity = 150/220 (68.18%), Postives = 185/220 (84.09%), Query Frame = 0
Query:    1 MWDRDDISNRNSHRTNPSSVENARIEMNAQFQTSS-RSQELSNSADGIPDAPRAFPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVEAFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQNSPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHERLWKLEQLQKELKKKSFGR 219
            MW+RD++SNR SHR++PSS  N+ ++ +     S  R+ E+  SADG+PD P++FPELESMSLRDL++LHEERARFDDFVSKH YQQQLDSI+S+ R +V+A +REH TI+ARMDEA+D+EA+ KL  ++A LEKEV AL K+K+EW+ QNSPERLMERLR A+ ESE+ SEALEK+MLSSSM FDEFLSQYIACR+KYHER  KLEQLQ E+KKKSFGR
Sbjct:   37 MWERDEVSNRVSHRSSPSSTTNSGLDASQSGPYSGPRAPEVDASADGLPDPPKSFPELESMSLRDLRLLHEERARFDDFVSKHQYQQQLDSIVSKVRANVDALEREHVTITARMDEAVDDEALEKLRRDVAELEKEVQALHKQKEEWLGQNSPERLMERLRTAMRESESTSEALEKNMLSSSMHFDEFLSQYIACRQKYHERSLKLEQLQMEVKKKSFGR 256          
BLAST of Gvermi12289.t1 vs. uniprot
Match: UPI001C9B6F58 (vacuolar protein sorting-associated protein 37A n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B6F58)

HSP 1 Score: 63.2 bits (152), Expect = 4.230e-8
Identity = 53/175 (30.29%), Postives = 91/175 (52.00%), Query Frame = 0
Query:   38 QELSNSADGIPDAPRAFPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVEAFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQNSPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHERLWKLEQLQKEL 212
            Q LSN A   P    AFPEL S+S  +LK+L+E+  + D+F+ KH   + ++  I    + V+     +      + E L  +  +K+ + +A L+   D L +  ++  E  +P+ + E LR A +ES  +SE + ++ L+  +  + FLS YI CR+    R  K E+L  +L
Sbjct:  241 QSLSNQAQTKPQQSVAFPELNSLSNEELKLLNEDDDKLDEFLDKHSKLKDVNVEIDDAIDWVQKIAEANVAKEPELRE-LQSDVASKV-QTVAALKARYDQLIQRYNKLSEVFTPDHIKECLRKAADESHEESERIAENFLNRKIDVERFLSTYIECRKLGQARRTKEEKLAHQL 413          
BLAST of Gvermi12289.t1 vs. uniprot
Match: UPI000840485A (vacuolar protein sorting-associated protein 37A-like isoform X1 n=2 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000840485A)

HSP 1 Score: 58.9 bits (141), Expect = 1.180e-6
Identity = 50/160 (31.25%), Postives = 82/160 (51.25%), Query Frame = 0
Query:   53 AFPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVEAFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQNSPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHERLWKLEQLQKEL 212
            AFPEL S++  +LK+L E+  R D+F+ KH   + +++ I    + V+     +      + E L  +  TK  E +A L+   D L +  ++  E  +P+ + E LR A +ES  KSE + +  L   +  + FLS YI CR+    R  K E+L  +L
Sbjct:  271 AFPELNSLTNEELKLLSEDDDRLDEFLDKHSEIKDVNTAIDDAIDWVQKTAEANLAKEPELRE-LQSDVATKA-ETVAALKARYDQLIQRYNKLSEVFTPDHIKECLRKAADESHEKSERIAEDFLDRKIDVERFLSTYIECRKLGQARRTKEEKLAHQL 428          
BLAST of Gvermi12289.t1 vs. uniprot
Match: UPI0006255486 (vacuolar protein sorting-associated protein 37A n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006255486)

HSP 1 Score: 58.2 bits (139), Expect = 2.120e-6
Identity = 47/159 (29.56%), Postives = 85/159 (53.46%), Query Frame = 0
Query:   54 FPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVEAFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQNSPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHERLWKLEQLQKEL 212
            FPEL  +S+ +LK L+ +  R D+F+ KH   +++++ I    + VE     + T  + + + L E+   K+ + +A L+   D L +  ++  E  +P+ + E L+ A +ES  KSE++ +  L   +  + FLS YI CR+    R  K E+L  +L
Sbjct:  257 FPELNKLSIEELKKLNGDEDRLDEFLEKHTQLKEINTAIEDTMDWVEKTAVANLTKESELRQ-LREDVAEKV-DTVAILKARYDKLIQRYNKLSEVFAPDHIKECLKQAADESHEKSESIAEDFLDRKIDVERFLSTYIECRKLGQARRTKEEKLAHQL 413          
BLAST of Gvermi12289.t1 vs. uniprot
Match: A0A482WSD0_LAOST (VPS37 C-terminal domain-containing protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482WSD0_LAOST)

HSP 1 Score: 56.2 bits (134), Expect = 8.520e-6
Identity = 52/172 (30.23%), Postives = 84/172 (48.84%), Query Frame = 0
Query:   41 SNSADGIPDAPRAFPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVEAFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQNSPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHERLWKLEQLQKEL 212
            SNSA   P     FPEL SMS+ +LK L+    R D+F+      + LD         +E   +++ +    +D+  +E  I +  +  +NL+ + + L  E  +  ++ SPE + E L+ A+ +S+ KSEA+ +  L   M  D FL  Y   R   H R  K E+L  +L
Sbjct:  177 SNSA---PVQSTIFPELNSMSIDELKRLYSNIDRIDEFLESTQPVRDLDRTKDDLITKIEEVSKDNLSKEPVLDKLREE--ILERQDVFSNLKSQFEVLNAEYQKLADRFSPESICESLQAAVIKSDEKSEAVAEMFLEGEMDVDAFLVAYENSRTISHCRKTKEEKLSHQL 343          
The following BLAST results are available for this feature:
BLAST of Gvermi12289.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J1H9_9FLOR4.980e-9368.18Vacuolar protein sorting-associated protein 37A n=... [more]
UPI001C9B6F584.230e-830.29vacuolar protein sorting-associated protein 37A n=... [more]
UPI000840485A1.180e-631.25vacuolar protein sorting-associated protein 37A-li... [more]
UPI00062554862.120e-629.56vacuolar protein sorting-associated protein 37A n=... [more]
A0A482WSD0_LAOST8.520e-630.23VPS37 C-terminal domain-containing protein n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 195..215
NoneNo IPR availableCOILSCoilCoilcoord: 115..149
NoneNo IPR availableCOILSCoilCoilcoord: 156..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53
NoneNo IPR availablePANTHERPTHR13678WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATEDcoord: 12..211
NoneNo IPR availablePANTHERPTHR13678:SF2VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37Acoord: 12..211
IPR029012Helix hairpin bin domain superfamilyGENE3D1.10.287.660Helix hairpin bincoord: 138..214
e-value: 1.7E-9
score: 39.6
IPR009851Modifier of rudimentary, ModrPFAMPF07200Mod_rcoord: 58..204
e-value: 3.9E-18
score: 65.9
IPR009851Modifier of rudimentary, ModrPROSITEPS51314VPS37_Ccoord: 133..219
score: 18.850061
IPR037202ESCRT assembly domainSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 151..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4104108..4104767 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12289.t1Gvermi12289.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4104108..4104767 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12289.t1 ID=Gvermi12289.t1|Name=Gvermi12289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=220bp
MWDRDDISNRNSHRTNPSSVENARIEMNAQFQTSSRSQELSNSADGIPDA
PRAFPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVE
AFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQN
SPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHE
RLWKLEQLQKELKKKSFGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029012Helix_hairpin_bin_sf
IPR009851Mod_r
IPR037202ESCRT_assembly_dom