Gvermi12395.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12395.t1
Unique NameGvermi12395.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4493884..4495056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_00416T0
PFAMsNT-C2
Max annot lvl4751|Fungi
Evalue1.1e-09
EggNOG OGs28JCR@1|root,2QRRN@2759|Eukaryota,38DSX@33154|Opisthokonta,3Q6V1@4751|Fungi
DescriptionN-terminal C2 in EEIG1 and EHBP1 proteins
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12395Gvermi12395Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4493884..4495056 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12395.t1.stop1Gvermi12395.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4493884..4493886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12395.t1.CDS1Gvermi12395.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4493884..4495056 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12395.t1.exon1Gvermi12395.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4493884..4495056 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12395.t1.start1Gvermi12395.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4495054..4495056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12395.t1Gvermi12395.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4493884..4495056 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12395.t1 ID=Gvermi12395.t1|Name=Gvermi12395.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=391bp
MRFRGGPPRVFAVALTIHQLDSIPLIHQLLYVQWRARRASPQEGRTPSLP
VEPGNVIRWDCHTHFSLPIYSDSADHTLLQPAPLLLQLRSERRPRWVGAA
SSFEGTVTVDLAEVAAVGFLSRNYLVQGSLLNTTLKLSIRVTHKSGDKIF
RTRTLPHISTALGRPSTPSTPTQATPSTSGTESAQPISLLEDDDPTSSLE
RSTEFDNPAKERQPSSHRLGATLAATKQPSNGSFTSSHSIAAPGPASFRN
TDPASSALFELVQTPSAVLESSIPNPDILQKDVYETMFQQRMRDRWPDHI
VQSRVEALSAVNSIYDAISQEDGIGLATVSDARNESDVNKFDQTLCLDHL
IESRANPNVGLPPLLATRRTSNRSLSVRSSSTSELKELAN*
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spliced messenger RNA

>Gvermi12395.t1 ID=Gvermi12395.t1|Name=Gvermi12395.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at ScGOVlb_3404:4493884..4495056- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTTCGCGGCGGTCCGCCGCGGGTGTTTGCCGTGGCTCTCACCAT
CCACCAGTTGGACAGTATCCCGCTAATCCACCAGCTGCTGTATGTGCAAT
GGCGCGCACGCCGCGCGTCGCCGCAAGAAGGCCGCACTCCATCGCTGCCC
GTCGAGCCCGGCAATGTTATTCGCTGGGACTGTCACACCCATTTCTCCCT
TCCCATCTACTCCGACTCCGCCGACCACACCTTGCTGCAGCCCGCCCCCC
TCCTGCTGCAGCTGCGCTCCGAGCGCCGGCCCCGCTGGGTCGGCGCCGCC
TCCTCCTTCGAGGGCACCGTCACCGTTGACTTGGCCGAGGTAGCCGCCGT
CGGGTTTCTGTCACGCAATTACCTCGTGCAAGGCAGTTTGCTCAATACCA
CCCTCAAGCTTTCCATTCGGGTCACCCACAAGTCGGGAGACAAGATCTTC
CGAACTCGCACTTTGCCGCACATCAGCACTGCTCTTGGGAGGCCCTCCAC
ACCCAGCACACCCACGCAGGCTACCCCAAGTACATCTGGCACTGAAAGTG
CTCAGCCCATTTCACTGCTTGAGGATGACGACCCCACATCCAGTCTCGAA
CGCTCAACTGAGTTTGATAATCCAGCAAAGGAGCGACAGCCTTCATCCCA
TCGCTTAGGTGCCACCCTCGCAGCTACCAAGCAGCCCTCTAACGGCTCTT
TCACCTCTTCCCACTCCATCGCCGCTCCGGGGCCCGCTTCTTTTCGCAAC
ACGGATCCCGCCTCTTCAGCTCTCTTCGAATTAGTCCAAACACCAAGTGC
TGTTCTTGAGAGTAGCATCCCTAATCCTGACATTCTGCAGAAGGACGTTT
ACGAGACCATGTTTCAACAGCGAATGCGGGATCGGTGGCCGGACCACATT
GTTCAATCCAGAGTTGAGGCATTATCGGCTGTTAACAGCATTTACGATGC
AATTTCTCAAGAAGACGGCATTGGCTTGGCCACTGTGTCTGACGCCCGAA
ATGAATCCGATGTTAACAAGTTCGACCAAACGCTATGTCTGGATCATCTT
ATAGAGAGCAGAGCCAATCCAAATGTTGGTCTTCCCCCACTGCTTGCAAC
CAGACGTACGAGTAATCGCAGTCTTTCTGTAAGATCCAGTTCTACCAGTG
AGCTCAAGGAGCTTGCCAACTGA
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protein sequence of Gvermi12395.t1

>Gvermi12395.t1 ID=Gvermi12395.t1|Name=Gvermi12395.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=391bp
MRFRGGPPRVFAVALTIHQLDSIPLIHQLLYVQWRARRASPQEGRTPSLP
VEPGNVIRWDCHTHFSLPIYSDSADHTLLQPAPLLLQLRSERRPRWVGAA
SSFEGTVTVDLAEVAAVGFLSRNYLVQGSLLNTTLKLSIRVTHKSGDKIF
RTRTLPHISTALGRPSTPSTPTQATPSTSGTESAQPISLLEDDDPTSSLE
RSTEFDNPAKERQPSSHRLGATLAATKQPSNGSFTSSHSIAAPGPASFRN
TDPASSALFELVQTPSAVLESSIPNPDILQKDVYETMFQQRMRDRWPDHI
VQSRVEALSAVNSIYDAISQEDGIGLATVSDARNESDVNKFDQTLCLDHL
IESRANPNVGLPPLLATRRTSNRSLSVRSSSTSELKELAN*
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mRNA from alignment at ScGOVlb_3404:4493884..4495056-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12395.t1 ID=Gvermi12395.t1|Name=Gvermi12395.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at ScGOVlb_3404:4493884..4495056- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTTCGCGGCGGTCCGCCGCGGGTGTTTGCCGTGGCTCTCACCAT
CCACCAGTTGGACAGTATCCCGCTAATCCACCAGCTGCTGTATGTGCAAT
GGCGCGCACGCCGCGCGTCGCCGCAAGAAGGCCGCACTCCATCGCTGCCC
GTCGAGCCCGGCAATGTTATTCGCTGGGACTGTCACACCCATTTCTCCCT
TCCCATCTACTCCGACTCCGCCGACCACACCTTGCTGCAGCCCGCCCCCC
TCCTGCTGCAGCTGCGCTCCGAGCGCCGGCCCCGCTGGGTCGGCGCCGCC
TCCTCCTTCGAGGGCACCGTCACCGTTGACTTGGCCGAGGTAGCCGCCGT
CGGGTTTCTGTCACGCAATTACCTCGTGCAAGGCAGTTTGCTCAATACCA
CCCTCAAGCTTTCCATTCGGGTCACCCACAAGTCGGGAGACAAGATCTTC
CGAACTCGCACTTTGCCGCACATCAGCACTGCTCTTGGGAGGCCCTCCAC
ACCCAGCACACCCACGCAGGCTACCCCAAGTACATCTGGCACTGAAAGTG
CTCAGCCCATTTCACTGCTTGAGGATGACGACCCCACATCCAGTCTCGAA
CGCTCAACTGAGTTTGATAATCCAGCAAAGGAGCGACAGCCTTCATCCCA
TCGCTTAGGTGCCACCCTCGCAGCTACCAAGCAGCCCTCTAACGGCTCTT
TCACCTCTTCCCACTCCATCGCCGCTCCGGGGCCCGCTTCTTTTCGCAAC
ACGGATCCCGCCTCTTCAGCTCTCTTCGAATTAGTCCAAACACCAAGTGC
TGTTCTTGAGAGTAGCATCCCTAATCCTGACATTCTGCAGAAGGACGTTT
ACGAGACCATGTTTCAACAGCGAATGCGGGATCGGTGGCCGGACCACATT
GTTCAATCCAGAGTTGAGGCATTATCGGCTGTTAACAGCATTTACGATGC
AATTTCTCAAGAAGACGGCATTGGCTTGGCCACTGTGTCTGACGCCCGAA
ATGAATCCGATGTTAACAAGTTCGACCAAACGCTATGTCTGGATCATCTT
ATAGAGAGCAGAGCCAATCCAAATGTTGGTCTTCCCCCACTGCTTGCAAC
CAGACGTACGAGTAATCGCAGTCTTTCTGTAAGATCCAGTTCTACCAGTG
AGCTCAAGGAGCTTGCCAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4493884..4495056-

>Gvermi12395.t1 ID=Gvermi12395.t1|Name=Gvermi12395.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1173bp|location=Sequence derived from alignment at ScGOVlb_3404:4493884..4495056- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTTCGCGGCGGTCCGCCGCGGGTGTTTGCCGTGGCTCTCACCAT
CCACCAGTTGGACAGTATCCCGCTAATCCACCAGCTGCTGTATGTGCAAT
GGCGCGCACGCCGCGCGTCGCCGCAAGAAGGCCGCACTCCATCGCTGCCC
GTCGAGCCCGGCAATGTTATTCGCTGGGACTGTCACACCCATTTCTCCCT
TCCCATCTACTCCGACTCCGCCGACCACACCTTGCTGCAGCCCGCCCCCC
TCCTGCTGCAGCTGCGCTCCGAGCGCCGGCCCCGCTGGGTCGGCGCCGCC
TCCTCCTTCGAGGGCACCGTCACCGTTGACTTGGCCGAGGTAGCCGCCGT
CGGGTTTCTGTCACGCAATTACCTCGTGCAAGGCAGTTTGCTCAATACCA
CCCTCAAGCTTTCCATTCGGGTCACCCACAAGTCGGGAGACAAGATCTTC
CGAACTCGCACTTTGCCGCACATCAGCACTGCTCTTGGGAGGCCCTCCAC
ACCCAGCACACCCACGCAGGCTACCCCAAGTACATCTGGCACTGAAAGTG
CTCAGCCCATTTCACTGCTTGAGGATGACGACCCCACATCCAGTCTCGAA
CGCTCAACTGAGTTTGATAATCCAGCAAAGGAGCGACAGCCTTCATCCCA
TCGCTTAGGTGCCACCCTCGCAGCTACCAAGCAGCCCTCTAACGGCTCTT
TCACCTCTTCCCACTCCATCGCCGCTCCGGGGCCCGCTTCTTTTCGCAAC
ACGGATCCCGCCTCTTCAGCTCTCTTCGAATTAGTCCAAACACCAAGTGC
TGTTCTTGAGAGTAGCATCCCTAATCCTGACATTCTGCAGAAGGACGTTT
ACGAGACCATGTTTCAACAGCGAATGCGGGATCGGTGGCCGGACCACATT
GTTCAATCCAGAGTTGAGGCATTATCGGCTGTTAACAGCATTTACGATGC
AATTTCTCAAGAAGACGGCATTGGCTTGGCCACTGTGTCTGACGCCCGAA
ATGAATCCGATGTTAACAAGTTCGACCAAACGCTATGTCTGGATCATCTT
ATAGAGAGCAGAGCCAATCCAAATGTTGGTCTTCCCCCACTGCTTGCAAC
CAGACGTACGAGTAATCGCAGTCTTTCTGTAAGATCCAGTTCTACCAGTG
AGCTCAAGGAGCTTGCCAACTGA
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