Gvermi12386.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12386.t1
Unique NameGvermi12386.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length259
Homology
BLAST of Gvermi12386.t1 vs. uniprot
Match: A0A2V3J3Z7_9FLOR (Exosome complex component RRP41-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3Z7_9FLOR)

HSP 1 Score: 386 bits (991), Expect = 1.520e-133
Identity = 195/258 (75.58%), Postives = 221/258 (85.66%), Query Frame = 0
Query:    1 MTNISYGPLARIE-QSKRTVARGVREDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSSNYTIDGTIHCDVRWAQFSGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVKNAKKTLKKRGRGQ 257
            M  I+YGPL RI+ +  +T  R VREDGRRWDELRPIY+RV +LS ATGSGYFEGGGTKIFCAVHGPRPS+SNYTIDGT+HCDVRWAQFSGR  A+ RQG+  SEEERE SSSLQRTLA+ VRLENYPK RIDVSAFVLED GGGFAAV TAASLALADAGVEMTD+ AGSTVA+I  QLV+DP+++EEA A GTVR+ + S RAK+TDLMQ GEVD+EQFREAIKVCC A +Q+  LM++CLVK AKK LKKRGR +
Sbjct:    1 MGAITYGPLVRIDGEGAKTKERDVREDGRRWDELRPIYMRVGMLSTATGSGYFEGGGTKIFCAVHGPRPSASNYTIDGTMHCDVRWAQFSGREGAAGRQGDSMSEEERELSSSLQRTLASAVRLENYPKCRIDVSAFVLEDGGGGFAAVTTAASLALADAGVEMTDIMAGSTVAVIGKQLVVDPSAREEAIADGTVRVGFASQRAKVTDLMQNGEVDLEQFREAIKVCCTASAQVCGLMKECLVKKAKKWLKKRGRSE 258          
BLAST of Gvermi12386.t1 vs. uniprot
Match: R7QSX7_CHOCR (Exosome component 6 Mtr3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSX7_CHOCR)

HSP 1 Score: 265 bits (676), Expect = 1.350e-85
Identity = 141/262 (53.82%), Postives = 181/262 (69.08%), Query Frame = 0
Query:    6 YGPLARIEQSKR--TVARGVREDGRR-WDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSSNYTIDGTIHCDVRWAQFSGRPAAS--------SRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVKNAKKTLKKRGRG 256
            YGPL R+  + +  T     R DGR  W+ELRP++L+ + LS A GS YFE GGTK+FCAVHGPR  +S+ +ID  +HC+VRWA FSGR   +        SR  E A++EERE  +SL RTL  V R+E YPKSRI+VSA VLED G  FAAV+TAA+LA+ADAG+EM DL A  T A++DG +V+DP ++EE  ASGTV +AY  N  K+TDL+Q GE++I Q   AI+  C A +Q+  L++ CL K A K LKKRGRG
Sbjct:    3 YGPLCRVTAAPKPKTSEAHKRSDGRTGWEELRPVFLKASFLSSAAGSAYFEAGGTKVFCAVHGPRAWASS-SIDAVVHCEVRWAHFSGRREETRTAAGGERSRPSESATDEERELGASLARTLGTVTRVEMYPKSRIEVSALVLEDDGSSFAAVVTAAALAMADAGIEMADLTAAMTAAVVDGNVVVDPNAEEERRASGTVMVAYMGNVGKVTDLVQTGEMEIGQLAHAIQTGCQAATQVRGLIKACLEKQAGKVLKKRGRG 263          
BLAST of Gvermi12386.t1 vs. uniprot
Match: A0A6A5BIL3_NAEFO (Uncharacterized protein n=3 Tax=Naegleria TaxID=5761 RepID=A0A6A5BIL3_NAEFO)

HSP 1 Score: 164 bits (415), Expect = 9.450e-46
Identity = 98/261 (37.55%), Postives = 150/261 (57.47%), Query Frame = 0
Query:    2 TNISYGPLARIEQSKRTVARGVREDGRRWDELRPIYLRVALLSKATGSGYFE-GGGTKIFCAVHGPRPSSSN---YTIDGTIHCDVRWAQF---------SGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVKNAKKT 249
            +N +  PL  IE  KR       +DGR  D+ R ++L+V ++ +A GS Y E   GTKI CAV+GPR  S+    ++  G + C+ R AQF         S   A S+ +   A+ EE EF   ++  L + +RL+ YPKS IDV  FVLED G   +  I+ ASLALA+AG+EM D+ +  T + ++GQ+V+DPTS E   ASG +   + SN  ++T L Q G++  ++  EA+ +C    +++  LM+ CL+++   T
Sbjct:   43 SNTTNTPLINIETGKR-------KDGRTCDKFRNVFLQVGVIKQARGSAYLEFHQGTKIICAVYGPRQVSAKNVEFSDTGRLQCEYRVAQFASLHHNSRSSASSAMSATKSHQATSEEIEFGIHMREALESSLRLDKYPKSVIDVYCFVLEDDGSALSGAISCASLALANAGIEMVDMVSACTTSELEGQIVVDPTSHEYKYASGGMVCGFMSNLNEVTQLTQVGDMSFQKVSEAMDLCIDGCTKLYQLMQQCLIESMMNT 296          
BLAST of Gvermi12386.t1 vs. uniprot
Match: A0A7S2ZLW4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLW4_9RHOD)

HSP 1 Score: 153 bits (387), Expect = 3.280e-42
Identity = 89/245 (36.33%), Postives = 136/245 (55.51%), Query Frame = 0
Query:    1 MTNISYGPLARIEQSKRTVARGVREDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSSNYT--ID-GTIHCDVRWAQFSGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCL 242
            +    YGPL  +E         +RE  R+W+ELRP+++R  ++S+A GS Y E   +K+ C+V GP   +   T  I+   I C +   +F G   A     E+      E+   L R L ++VR+E YPKS I+V   V+ED G    A IT A LALADA +E+ +L A  +VA  +GQL+LDPT  EE  +SG+V ++Y +   K+  + Q G++  +Q  EA+ +      +I+ L+R+CL
Sbjct:    3 LREFDYGPLVSVEGGSEET---IRERKRQWNELRPLFMRTRMVSQAAGSSYIEAENSKVICSVSGPLALTGGRTEAIERAKISCYISRTKFCGLEDA-----ELEKRATTEYEGILCRALESIVRVEQYPKSTIEVHVLVIEDDGSTLPAAITCACLALADAKIELRELMACCSVAYANGQLLLDPTLDEEKESSGSVLVSYLATSGKVATVFQTGQLAYDQMAEAVDMTISGAREIAVLVRNCL 239          
BLAST of Gvermi12386.t1 vs. uniprot
Match: A0A507EGV0_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EGV0_9FUNG)

HSP 1 Score: 153 bits (387), Expect = 3.760e-42
Identity = 87/225 (38.67%), Postives = 131/225 (58.22%), Query Frame = 0
Query:   24 REDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPS-SSNYTIDGTIHCDVRWAQFSGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGG--FAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVKN 245
            R+DGR  D +RP++++  ++ +A GS Y E G  K+ CAV+GPR +  S  +  GT+ CD +++ FSG      R+G M   +ERE+S  L++ L+  VRL+  PKS IDV   +LE  G     AA IT ASLALADAG+EM D  A          + LDPT +EE    G++ ++Y  +  ++T ++Q GE       +A+++C  A SQI ++M+  L  N
Sbjct:   33 RKDGRNVDRIRPVFMKTGVVRQANGSAYMEAGKLKVACAVYGPRQNLKSKVSTRGTLGCDFKFSPFSG----GRRRGYMKDSQEREYSLVLEQALSPAVRLDLMPKSTIDVFVQILESDGSAACLAAAITCASLALADAGIEMVDAVAACAAGYFGSTICLDPTEEEEGYEGGSLVLSYMPSLNEVTHVIQSGETSTATTVKALELCVDACSQIHTVMQQSLAAN 253          
BLAST of Gvermi12386.t1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.970e-42
Identity = 90/222 (40.54%), Postives = 140/222 (63.06%), Query Frame = 0
Query:   24 REDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSSN--YTIDGTIHCDVRWAQFSGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLV 243
            R DGR+  ELR +YL + ++S+A+GS Y E   TK+ CAV+GP   S +  ++ +G + CD+R A F+ +P  S  +G+  ++EERE S++LQ+ L A VRL+   K+ +DV   VL   GG   A IT ASLALA+A +E+ DL A  T A  DGQ++LDPT++EEA A G+V +A   +  ++T   Q+G +   Q   A+++C    + ++++MR  L+
Sbjct:   33 RGDGRKASELRRVYLDLGVVSQASGSAYLELDHTKVICAVYGPHAQSMDTAFSEEGQLKCDLRMAPFA-QPKRSEVRGQ--TDEERELSATLQQALEASVRLDLLTKTAVDVYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLL 251          
BLAST of Gvermi12386.t1 vs. uniprot
Match: F4NT56_BATDJ (RNase_PH domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NT56_BATDJ)

HSP 1 Score: 153 bits (386), Expect = 5.170e-42
Identity = 92/227 (40.53%), Postives = 135/227 (59.47%), Query Frame = 0
Query:   22 GVREDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSSNY--TIDGTIHCDVRWAQFSGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGG--GFAAVITAASLALADAGVEMTDLAAGSTVAMI-DGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLV 243
            G R D RR D++RPIY +   + +A GS Y E G  K+ CAV+GPR SSS    +  GT+ CD ++A FSG      R+G    ++E+EFS  L++ L   +RLENYPK  I V   VLE+ G     AA I+ ASLALA+AG+EM D+ A S++A   +  L LD + KEE    G + ++Y  +  ++T L+Q G     Q  +AI++   A SQI +++++ L+
Sbjct:   29 GQRADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQCDFKFAPFSGE----KRKGYAKDDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLENDGSMSALAAAISCASLALANAGIEMLDMVAASSIAYFGESMLCLDVSLKEEMVQDGAMLVSYMPSLNEVTHLIQTGLATTSQCTKAIELGVDACSQIHTILQEALL 251          
BLAST of Gvermi12386.t1 vs. uniprot
Match: UPI0018F4A7E2 (exosome complex component MTR3 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F4A7E2)

HSP 1 Score: 152 bits (383), Expect = 2.540e-41
Identity = 94/232 (40.52%), Postives = 130/232 (56.03%), Query Frame = 0
Query:   22 GVREDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSSNYTI----DGTIHCDVRWAQFSG--RPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQ--LVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVD-IEQFREAIKVCCVAGSQISSLMRDCLVK 244
            G  E+ R    LRP++ R  LLS+A GS Y E GGTK+ CAV GPRP+ +        +G +HCD R A F G  RPAA +      S EE+E SS LQ  L   VRL  YP++R+D+ A +LED G   AA +TAA+LALADAGVEM DL  G  ++   G    +LDP  +EE  A   + +A      +++ L+ QG       +  A+ +   A  ++  L+R CL++
Sbjct:   30 GEEEEAREASRLRPVFARAGLLSQAKGSAYLEAGGTKVLCAVSGPRPAEAGXXXXXXXEGRLHCDFRRAPFCGARRPAAGAGAAGGPSAEEKELSSWLQEALEPAVRLSRYPRARLDLWALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSRPPGPGPWLLDPGRREEERAQARLTVALMPVLNQVSGLLGQGRPQPAHAWPGALGLAVDACQRLYPLLRRCLLR 261          
BLAST of Gvermi12386.t1 vs. uniprot
Match: A0A7M6DPY3_9CNID (RNase_PH domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPY3_9CNID)

HSP 1 Score: 151 bits (382), Expect = 3.310e-41
Identity = 90/228 (39.47%), Postives = 134/228 (58.77%), Query Frame = 0
Query:   21 RGVREDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSSNYTI--DGTIHCDVRWAQFSGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANAS--GTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVK 244
            +G+R+D RR DE+RPIYL+  ++  A GS Y E  GTK+ CAV+GPR  +  +     G + C + +A FS +P    R  E+      E+S+ +  +L + V L+ YPKS+IDV   VLED G   +  ITAAS+ALADAG+EM DL   S++   D    LDP S E+ +    G + IAY  +  KI+ L+Q G V++E+  E +  C     ++  +M++CL+K
Sbjct:   40 KGLRKDTRRTDEVRPIYLKAGVVQSANGSAYLETSGTKLTCAVYGPRDYAKRHQFRSSGKLTCSLTFAPFS-KP---QRFTEIRDSLSTEYSNFIADSLMSAVCLDAYPKSQIDVYVNVLEDNGNTLSYAITAASVALADAGIEMVDLVTSSSLVFNDDVFCLDPDSSEQKHKDVYGKMSIAYLPSLNKISCLLQDGAVEVERSIELVNTCLEGCLRVHDVMKECLLK 263          
BLAST of Gvermi12386.t1 vs. uniprot
Match: A0A7I8KP67_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KP67_SPIIN)

HSP 1 Score: 150 bits (379), Expect = 5.010e-41
Identity = 87/222 (39.19%), Postives = 132/222 (59.46%), Query Frame = 0
Query:   23 VREDGRRWDELRPIYLRVALLSKATGSGYFEGGGTKIFCAVHGPRPSSS--NYTIDGTIHCDVRWAQFSGRPAASSRQGEMASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVITAASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYTSNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCL 242
            VR DGR + + RP +LR      A+GS Y E G TK+  +V GPR S     Y+  G ++C+V +A FS     ++ +G+ +  + ++FSS L + L   V LE++PK+ +DV A VLE  G    AVI+ ASLALADAG+ M DL A ++V+ I   L++DP ++EE    G++ +A+  +R +IT L   GE    +  EA ++C  A S++  +MR CL
Sbjct:   26 VRSDGRGFHQCRPAFLRTGAARAASGSAYAEFGSTKVIVSVFGPRESKKAMKYSGIGRLNCNVNFATFS-----TATRGQES--DHKDFSSMLHKALEGAVLLESFPKTTVDVFALVLESGGSDLPAVISCASLALADAGIMMYDLVASASVSCIGNSLIIDPAAEEEDCQDGSLTVAFMPSRREITQLTLTGEWSTGRIHEATELCLDACSKLGEIMRTCL 240          
The following BLAST results are available for this feature:
BLAST of Gvermi12386.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3Z7_9FLOR1.520e-13375.58Exosome complex component RRP41-like n=1 Tax=Graci... [more]
R7QSX7_CHOCR1.350e-8553.82Exosome component 6 Mtr3 n=1 Tax=Chondrus crispus ... [more]
A0A6A5BIL3_NAEFO9.450e-4637.55Uncharacterized protein n=3 Tax=Naegleria TaxID=57... [more]
A0A7S2ZLW4_9RHOD3.280e-4236.33Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A507EGV0_9FUNG3.760e-4238.67Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A835ZHR0_9STRA3.970e-4240.54Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
F4NT56_BATDJ5.170e-4240.53RNase_PH domain-containing protein n=2 Tax=Batrach... [more]
UPI0018F4A7E22.540e-4140.52exosome complex component MTR3 n=1 Tax=Tachyglossu... [more]
A0A7M6DPY3_9CNID3.310e-4139.47RNase_PH domain-containing protein n=1 Tax=Clytia ... [more]
A0A7I8KP67_SPIIN5.010e-4139.19Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 11..254
e-value: 8.3E-62
score: 210.7
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 166..225
e-value: 4.3E-9
score: 36.3
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 32..162
e-value: 4.9E-28
score: 98.3
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 13..247
NoneNo IPR availablePANTHERPTHR11953:SF2EXOSOME COMPLEX COMPONENT MTR3coord: 13..247
NoneNo IPR availableCDDcd11371RNase_PH_MTR3coord: 33..244
e-value: 1.07388E-73
score: 222.056
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 14..188
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 163..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4461754..4462530 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12386.t1Gvermi12386.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4461754..4462530 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12386.t1 ID=Gvermi12386.t1|Name=Gvermi12386.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=259bp
MTNISYGPLARIEQSKRTVARGVREDGRRWDELRPIYLRVALLSKATGSG
YFEGGGTKIFCAVHGPRPSSSNYTIDGTIHCDVRWAQFSGRPAASSRQGE
MASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVIT
AASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYT
SNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVKNAKKTL
KKRGRGQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR015847ExoRNase_PH_dom2
IPR001247ExoRNase_PH_dom1
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf