Gvermi12386.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12386.t1
Unique NameGvermi12386.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4461754..4462530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006675978.1
Preferred nameMTR3
PFAMsRNase_PH,RNase_PH_C
Max annot lvl4751|Fungi
KEGG koko:K12587
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071034,GO:0071035,GO:0071038,GO:0071039,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354
Evalue1.1e-40
EggNOG OGsCOG0689@1|root,KOG1068@2759|Eukaryota,39XUC@33154|Opisthokonta,3NUZX@4751|Fungi
Description3' exoribonuclease
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12386Gvermi12386Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4461754..4462530 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12386.t1.stop1Gvermi12386.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4461754..4461756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12386.t1.CDS1Gvermi12386.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4461754..4462530 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12386.t1.exon1Gvermi12386.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4461754..4462530 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12386.t1.start1Gvermi12386.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4462528..4462530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12386.t1Gvermi12386.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4461754..4462530 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12386.t1 ID=Gvermi12386.t1|Name=Gvermi12386.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=259bp
MTNISYGPLARIEQSKRTVARGVREDGRRWDELRPIYLRVALLSKATGSG
YFEGGGTKIFCAVHGPRPSSSNYTIDGTIHCDVRWAQFSGRPAASSRQGE
MASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVIT
AASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYT
SNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVKNAKKTL
KKRGRGQS*
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spliced messenger RNA

>Gvermi12386.t1 ID=Gvermi12386.t1|Name=Gvermi12386.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=777bp|location=Sequence derived from alignment at ScGOVlb_3404:4461754..4462530- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACATATCGTACGGCCCCCTCGCGCGAATTGAGCAAAGCAAGCG
GACTGTCGCACGGGGCGTTCGGGAAGACGGGCGGCGCTGGGACGAGCTAC
GACCAATTTACTTGCGGGTCGCCCTTCTTTCCAAGGCCACAGGCTCAGGG
TACTTCGAAGGCGGCGGCACCAAAATATTCTGCGCCGTACACGGTCCGCG
ACCGTCGTCATCGAATTACACGATTGACGGGACCATTCACTGCGATGTGC
GATGGGCCCAGTTCTCGGGCAGACCAGCGGCGAGCAGTCGGCAAGGCGAA
ATGGCCTCGGAGGAGGAGCGAGAATTCAGCAGTTCGCTGCAGCGCACACT
GGCAGCCGTGGTTAGATTGGAAAACTACCCAAAGTCTAGGATTGACGTGT
CGGCGTTTGTGCTGGAAGATGCTGGAGGAGGATTTGCTGCGGTGATCACA
GCGGCTTCGCTTGCGTTAGCGGACGCTGGGGTGGAAATGACAGATCTTGC
GGCGGGGAGCACCGTGGCAATGATAGACGGGCAGCTAGTTCTGGATCCTA
CTTCTAAAGAGGAGGCGAATGCTTCTGGAACTGTGCGCATTGCGTACACA
AGTAATCGGGCAAAAATAACGGATTTGATGCAACAAGGAGAAGTGGACAT
TGAGCAGTTTCGGGAGGCCATTAAAGTGTGTTGTGTTGCAGGGAGTCAGA
TTTCTAGTTTGATGAGAGACTGTCTTGTGAAGAACGCGAAAAAAACGTTA
AAGAAGCGTGGCAGAGGCCAAAGCTAA
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protein sequence of Gvermi12386.t1

>Gvermi12386.t1 ID=Gvermi12386.t1|Name=Gvermi12386.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=259bp
MTNISYGPLARIEQSKRTVARGVREDGRRWDELRPIYLRVALLSKATGSG
YFEGGGTKIFCAVHGPRPSSSNYTIDGTIHCDVRWAQFSGRPAASSRQGE
MASEEEREFSSSLQRTLAAVVRLENYPKSRIDVSAFVLEDAGGGFAAVIT
AASLALADAGVEMTDLAAGSTVAMIDGQLVLDPTSKEEANASGTVRIAYT
SNRAKITDLMQQGEVDIEQFREAIKVCCVAGSQISSLMRDCLVKNAKKTL
KKRGRGQS*
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mRNA from alignment at ScGOVlb_3404:4461754..4462530-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12386.t1 ID=Gvermi12386.t1|Name=Gvermi12386.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=777bp|location=Sequence derived from alignment at ScGOVlb_3404:4461754..4462530- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGAACATATCGTACGGCCCCCTCGCGCGAATTGAGCAAAGCAAGCG
GACTGTCGCACGGGGCGTTCGGGAAGACGGGCGGCGCTGGGACGAGCTAC
GACCAATTTACTTGCGGGTCGCCCTTCTTTCCAAGGCCACAGGCTCAGGG
TACTTCGAAGGCGGCGGCACCAAAATATTCTGCGCCGTACACGGTCCGCG
ACCGTCGTCATCGAATTACACGATTGACGGGACCATTCACTGCGATGTGC
GATGGGCCCAGTTCTCGGGCAGACCAGCGGCGAGCAGTCGGCAAGGCGAA
ATGGCCTCGGAGGAGGAGCGAGAATTCAGCAGTTCGCTGCAGCGCACACT
GGCAGCCGTGGTTAGATTGGAAAACTACCCAAAGTCTAGGATTGACGTGT
CGGCGTTTGTGCTGGAAGATGCTGGAGGAGGATTTGCTGCGGTGATCACA
GCGGCTTCGCTTGCGTTAGCGGACGCTGGGGTGGAAATGACAGATCTTGC
GGCGGGGAGCACCGTGGCAATGATAGACGGGCAGCTAGTTCTGGATCCTA
CTTCTAAAGAGGAGGCGAATGCTTCTGGAACTGTGCGCATTGCGTACACA
AGTAATCGGGCAAAAATAACGGATTTGATGCAACAAGGAGAAGTGGACAT
TGAGCAGTTTCGGGAGGCCATTAAAGTGTGTTGTGTTGCAGGGAGTCAGA
TTTCTAGTTTGATGAGAGACTGTCTTGTGAAGAACGCGAAAAAAACGTTA
AAGAAGCGTGGCAGAGGCCAAAGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4461754..4462530-

>Gvermi12386.t1 ID=Gvermi12386.t1|Name=Gvermi12386.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=777bp|location=Sequence derived from alignment at ScGOVlb_3404:4461754..4462530- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGAACATATCGTACGGCCCCCTCGCGCGAATTGAGCAAAGCAAGCG
GACTGTCGCACGGGGCGTTCGGGAAGACGGGCGGCGCTGGGACGAGCTAC
GACCAATTTACTTGCGGGTCGCCCTTCTTTCCAAGGCCACAGGCTCAGGG
TACTTCGAAGGCGGCGGCACCAAAATATTCTGCGCCGTACACGGTCCGCG
ACCGTCGTCATCGAATTACACGATTGACGGGACCATTCACTGCGATGTGC
GATGGGCCCAGTTCTCGGGCAGACCAGCGGCGAGCAGTCGGCAAGGCGAA
ATGGCCTCGGAGGAGGAGCGAGAATTCAGCAGTTCGCTGCAGCGCACACT
GGCAGCCGTGGTTAGATTGGAAAACTACCCAAAGTCTAGGATTGACGTGT
CGGCGTTTGTGCTGGAAGATGCTGGAGGAGGATTTGCTGCGGTGATCACA
GCGGCTTCGCTTGCGTTAGCGGACGCTGGGGTGGAAATGACAGATCTTGC
GGCGGGGAGCACCGTGGCAATGATAGACGGGCAGCTAGTTCTGGATCCTA
CTTCTAAAGAGGAGGCGAATGCTTCTGGAACTGTGCGCATTGCGTACACA
AGTAATCGGGCAAAAATAACGGATTTGATGCAACAAGGAGAAGTGGACAT
TGAGCAGTTTCGGGAGGCCATTAAAGTGTGTTGTGTTGCAGGGAGTCAGA
TTTCTAGTTTGATGAGAGACTGTCTTGTGAAGAACGCGAAAAAAACGTTA
AAGAAGCGTGGCAGAGGCCAAAGCTAA
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