Gvermi12260.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12260.t1
Unique NameGvermi12260.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4012235..4013044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12260Gvermi12260Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4012235..4013044 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12260.t1.start1Gvermi12260.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4012235..4012237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12260.t1.CDS1Gvermi12260.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4012235..4013044 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12260.t1.exon1Gvermi12260.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4012235..4013044 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12260.t1.stop1Gvermi12260.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4013042..4013044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12260.t1Gvermi12260.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4012235..4013044 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12260.t1 ID=Gvermi12260.t1|Name=Gvermi12260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=270bp
MDAAGDTPVYILRKENYKVRHTIELTATRSRVVTSILNTGAGPNLVHPQV
LPPSWEDAVQIRKTPKVTDASRRPMDIKGIITLRVQLGDHQVCTWFPFCS
TFGAECLLGTSFIDRYVKAIYPGLQKVSLYRPRPVAIIGSKSGPEASPRR
PPLAQNTVSNKVRLSKAILIPPMTQITAKVTCETAGLVKLQNHPRTIDRH
MSLMANGIMDCRPMVPFLVQISNFRDCPVRLPKGIIIGIALPVPMAIMVT
SWDELTRTSDATSKVGRGR*
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spliced messenger RNA

>Gvermi12260.t1 ID=Gvermi12260.t1|Name=Gvermi12260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=810bp|location=Sequence derived from alignment at ScGOVlb_3404:4012235..4013044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCGCTGGGGATACGCCAGTATATATTCTGCGAAAAGAGAACTA
TAAAGTGCGACACACCATTGAATTGACTGCCACAAGGTCTCGGGTCGTAA
CCAGCATCCTGAACACTGGGGCTGGTCCAAACTTGGTTCACCCGCAGGTT
CTACCACCTAGTTGGGAGGATGCGGTGCAGATCCGGAAGACTCCTAAGGT
TACAGATGCGTCGAGACGACCTATGGACATTAAAGGAATCATTACCCTTC
GCGTACAGTTGGGTGACCATCAGGTTTGCACGTGGTTCCCTTTTTGTTCT
ACCTTTGGCGCAGAATGTCTCCTAGGGACGTCTTTTATAGACCGCTATGT
GAAAGCGATCTATCCGGGCCTCCAGAAGGTGTCTTTGTACCGCCCCCGTC
CTGTAGCTATCATCGGTTCTAAATCTGGTCCCGAGGCTAGCCCGCGTCGA
CCTCCACTGGCGCAGAATACCGTATCCAATAAGGTTCGGTTATCGAAGGC
GATATTGATACCGCCGATGACGCAGATTACCGCAAAGGTCACCTGCGAAA
CCGCTGGTCTCGTGAAGCTGCAGAATCACCCTCGGACGATTGATCGCCAT
ATGTCATTAATGGCCAATGGTATTATGGACTGCAGACCAATGGTACCCTT
TCTGGTTCAGATAAGTAACTTCCGGGACTGCCCGGTACGTCTACCTAAAG
GTATAATAATTGGGATAGCGCTCCCTGTTCCAATGGCTATCATGGTAACC
TCATGGGATGAACTCACCCGCACCTCCGACGCGACGTCGAAAGTTGGGAG
GGGGAGGTAA
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protein sequence of Gvermi12260.t1

>Gvermi12260.t1 ID=Gvermi12260.t1|Name=Gvermi12260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
MDAAGDTPVYILRKENYKVRHTIELTATRSRVVTSILNTGAGPNLVHPQV
LPPSWEDAVQIRKTPKVTDASRRPMDIKGIITLRVQLGDHQVCTWFPFCS
TFGAECLLGTSFIDRYVKAIYPGLQKVSLYRPRPVAIIGSKSGPEASPRR
PPLAQNTVSNKVRLSKAILIPPMTQITAKVTCETAGLVKLQNHPRTIDRH
MSLMANGIMDCRPMVPFLVQISNFRDCPVRLPKGIIIGIALPVPMAIMVT
SWDELTRTSDATSKVGRGR*
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mRNA from alignment at ScGOVlb_3404:4012235..4013044+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12260.t1 ID=Gvermi12260.t1|Name=Gvermi12260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=810bp|location=Sequence derived from alignment at ScGOVlb_3404:4012235..4013044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCCGCTGGGGATACGCCAGTATATATTCTGCGAAAAGAGAACTA
TAAAGTGCGACACACCATTGAATTGACTGCCACAAGGTCTCGGGTCGTAA
CCAGCATCCTGAACACTGGGGCTGGTCCAAACTTGGTTCACCCGCAGGTT
CTACCACCTAGTTGGGAGGATGCGGTGCAGATCCGGAAGACTCCTAAGGT
TACAGATGCGTCGAGACGACCTATGGACATTAAAGGAATCATTACCCTTC
GCGTACAGTTGGGTGACCATCAGGTTTGCACGTGGTTCCCTTTTTGTTCT
ACCTTTGGCGCAGAATGTCTCCTAGGGACGTCTTTTATAGACCGCTATGT
GAAAGCGATCTATCCGGGCCTCCAGAAGGTGTCTTTGTACCGCCCCCGTC
CTGTAGCTATCATCGGTTCTAAATCTGGTCCCGAGGCTAGCCCGCGTCGA
CCTCCACTGGCGCAGAATACCGTATCCAATAAGGTTCGGTTATCGAAGGC
GATATTGATACCGCCGATGACGCAGATTACCGCAAAGGTCACCTGCGAAA
CCGCTGGTCTCGTGAAGCTGCAGAATCACCCTCGGACGATTGATCGCCAT
ATGTCATTAATGGCCAATGGTATTATGGACTGCAGACCAATGGTACCCTT
TCTGGTTCAGATAAGTAACTTCCGGGACTGCCCGGTACGTCTACCTAAAG
GTATAATAATTGGGATAGCGCTCCCTGTTCCAATGGCTATCATGGTAACC
TCATGGGATGAACTCACCCGCACCTCCGACGCGACGTCGAAAGTTGGGAG
GGGGAGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4012235..4013044+

>Gvermi12260.t1 ID=Gvermi12260.t1|Name=Gvermi12260.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=810bp|location=Sequence derived from alignment at ScGOVlb_3404:4012235..4013044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCCGCTGGGGATACGCCAGTATATATTCTGCGAAAAGAGAACTA
TAAAGTGCGACACACCATTGAATTGACTGCCACAAGGTCTCGGGTCGTAA
CCAGCATCCTGAACACTGGGGCTGGTCCAAACTTGGTTCACCCGCAGGTT
CTACCACCTAGTTGGGAGGATGCGGTGCAGATCCGGAAGACTCCTAAGGT
TACAGATGCGTCGAGACGACCTATGGACATTAAAGGAATCATTACCCTTC
GCGTACAGTTGGGTGACCATCAGGTTTGCACGTGGTTCCCTTTTTGTTCT
ACCTTTGGCGCAGAATGTCTCCTAGGGACGTCTTTTATAGACCGCTATGT
GAAAGCGATCTATCCGGGCCTCCAGAAGGTGTCTTTGTACCGCCCCCGTC
CTGTAGCTATCATCGGTTCTAAATCTGGTCCCGAGGCTAGCCCGCGTCGA
CCTCCACTGGCGCAGAATACCGTATCCAATAAGGTTCGGTTATCGAAGGC
GATATTGATACCGCCGATGACGCAGATTACCGCAAAGGTCACCTGCGAAA
CCGCTGGTCTCGTGAAGCTGCAGAATCACCCTCGGACGATTGATCGCCAT
ATGTCATTAATGGCCAATGGTATTATGGACTGCAGACCAATGGTACCCTT
TCTGGTTCAGATAAGTAACTTCCGGGACTGCCCGGTACGTCTACCTAAAG
GTATAATAATTGGGATAGCGCTCCCTGTTCCAATGGCTATCATGGTAACC
TCATGGGATGAACTCACCCGCACCTCCGACGCGACGTCGAAAGTTGGGAG
GGGGAGGTAA
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