Gvermi12393.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12393.t1
Unique NameGvermi12393.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4490571..4491302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708003.1
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08910,ko:K08911
KEGG Pathwayko00196,map00196
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009521,GO:0009522,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009782,GO:0009941,GO:0009987,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0046983,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:0098796,GO:1901363
Evalue6.42e-49
EggNOG OGs2BTIX@1|root,2S212@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12393Gvermi12393Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4490571..4491302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12393.t1Gvermi12393.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4490571..4491302 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12393.t1.start1Gvermi12393.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4490571..4490573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12393.t1.CDS1Gvermi12393.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4490571..4490754 +
Gvermi12393.t1.CDS2Gvermi12393.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4490836..4491302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12393.t1.exon1Gvermi12393.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4490571..4490754 +
Gvermi12393.t1.exon2Gvermi12393.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4490836..4491302 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12393.t1.intron1Gvermi12393.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4490755..4490835 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12393.t1.stop1Gvermi12393.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4491300..4491302 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12393.t1 ID=Gvermi12393.t1|Name=Gvermi12393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=217bp
MAFVTSFVPAFAGARAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPA
LTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQ
FPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKS
DRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITN
QNLVEQLTSGNILPKL*
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spliced messenger RNA

>Gvermi12393.t1 ID=Gvermi12393.t1|Name=Gvermi12393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_3404:4490571..4491302+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTGACATCGTTTGTTCCAGCGTTTGCTGGCGCTCGCGCCGC
CTTTAGCGCGCGTGTTTGCACCCTGTCAAGACGGGGTGTGGCGGGTGTAG
TCATGGCTGAGAAAAGCCCGGCCGTCCCTTTCATGGATGCCCCTCCAGCC
CTCACACCTGACATGCCAGGCTACGTCGGGTTCGACCCGTTCAATATCTC
CGCCTACCTTAACGTAAAGTGGTTGCAGGAAGCTGAAATCAAGCACGCCC
GTATCTGTCTGCTCGCCATTCTCGGCTTTATCGTCTCTGAGCTGTACCAA
TTCCCGTGGTATACGGACTACCCTCACCTTGTAATTTACCGCCACAACTG
GGCCGTCACCAATGGCTCGCTCTATCAGATTCTGCTGTGGTGCTCATTCT
TCGAAATCATGACTCTCCCAGCCGTCACCCAGATGGTCACTGGAAAGAGT
GATAGAGCTCCAGGGGATTTCAAGTTTGACCCGTTGGGCCTTGCAAAAGA
TCCGGCAAAGATGGCAGTTTACAAGGTTAACGAGATCAAGAACGGACGTT
TGGCCATGATTGCCGTCTCCGGCGCTATCCATCATGCTGCTATCACCAAC
CAGAATCTCGTCGAGCAGCTTACCTCCGGCAACATTCTGCCTAAATTGTA
G
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protein sequence of Gvermi12393.t1

>Gvermi12393.t1 ID=Gvermi12393.t1|Name=Gvermi12393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MAFVTSFVPAFAGARAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPA
LTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQ
FPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKS
DRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITN
QNLVEQLTSGNILPKL*
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mRNA from alignment at ScGOVlb_3404:4490571..4491302+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12393.t1 ID=Gvermi12393.t1|Name=Gvermi12393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_3404:4490571..4491302+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTTGTGACATCGTTTGTTCCAGCGTTTGCTGGCGCTCGCGCCGC
CTTTAGCGCGCGTGTTTGCACCCTGTCAAGACGGGGTGTGGCGGGTGTAG
TCATGGCTGAGAAAAGCCCGGCCGTCCCTTTCATGGATGCCCCTCCAGCC
CTCACACCTGACATGCCAGGCTACGTCGGGTTCGGTAAGTCTATGATATC
GTCAGACCGCACAAAAAGCGCGCCATTTTTGCGGATTCCCTTTCGTGCTA
ACCTCAGTCAAACAGACCCGTTCAATATCTCCGCCTACCTTAACGTAAAG
TGGTTGCAGGAAGCTGAAATCAAGCACGCCCGTATCTGTCTGCTCGCCAT
TCTCGGCTTTATCGTCTCTGAGCTGTACCAATTCCCGTGGTATACGGACT
ACCCTCACCTTGTAATTTACCGCCACAACTGGGCCGTCACCAATGGCTCG
CTCTATCAGATTCTGCTGTGGTGCTCATTCTTCGAAATCATGACTCTCCC
AGCCGTCACCCAGATGGTCACTGGAAAGAGTGATAGAGCTCCAGGGGATT
TCAAGTTTGACCCGTTGGGCCTTGCAAAAGATCCGGCAAAGATGGCAGTT
TACAAGGTTAACGAGATCAAGAACGGACGTTTGGCCATGATTGCCGTCTC
CGGCGCTATCCATCATGCTGCTATCACCAACCAGAATCTCGTCGAGCAGC
TTACCTCCGGCAACATTCTGCCTAAATTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4490571..4491302+

>Gvermi12393.t1 ID=Gvermi12393.t1|Name=Gvermi12393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=651bp|location=Sequence derived from alignment at ScGOVlb_3404:4490571..4491302+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTTGTGACATCGTTTGTTCCAGCGTTTGCTGGCGCTCGCGCCGC
CTTTAGCGCGCGTGTTTGCACCCTGTCAAGACGGGGTGTGGCGGGTGTAG
TCATGGCTGAGAAAAGCCCGGCCGTCCCTTTCATGGATGCCCCTCCAGCC
CTCACACCTGACATGCCAGGCTACGTCGGGTTCGACCCGTTCAATATCTC
CGCCTACCTTAACGTAAAGTGGTTGCAGGAAGCTGAAATCAAGCACGCCC
GTATCTGTCTGCTCGCCATTCTCGGCTTTATCGTCTCTGAGCTGTACCAA
TTCCCGTGGTATACGGACTACCCTCACCTTGTAATTTACCGCCACAACTG
GGCCGTCACCAATGGCTCGCTCTATCAGATTCTGCTGTGGTGCTCATTCT
TCGAAATCATGACTCTCCCAGCCGTCACCCAGATGGTCACTGGAAAGAGT
GATAGAGCTCCAGGGGATTTCAAGTTTGACCCGTTGGGCCTTGCAAAAGA
TCCGGCAAAGATGGCAGTTTACAAGGTTAACGAGATCAAGAACGGACGTT
TGGCCATGATTGCCGTCTCCGGCGCTATCCATCATGCTGCTATCACCAAC
CAGAATCTCGTCGAGCAGCTTACCTCCGGCAACATTCTGCCTAAATTGTA
G
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