Gvermi12103.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12103.t2
Unique NameGvermi12103.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3418836..3420125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705069.1
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl2759|Eukaryota
KEGG koko:K03686
GOsGO:0000122,GO:0001671,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008047,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0030544,GO:0031072,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032781,GO:0033554,GO:0035966,GO:0042221,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043618,GO:0043620,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051117,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051716,GO:0060255,GO:0060589,GO:0060590,GO:0061077,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0080134,GO:0080135,GO:0090083,GO:0090084,GO:0097201,GO:0098772,GO:0140110,GO:1900034,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue1.73e-88
EggNOG OGsCOG0484@1|root,KOG0715@2759|Eukaryota
Descriptionheat shock protein binding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12103Gvermi12103Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3418836..3420125 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t2.stop1Gvermi12103.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3418836..3418838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t2.CDS1Gvermi12103.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3418836..3420125 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t2.exon1Gvermi12103.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3418836..3420125 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t2.start1Gvermi12103.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3420123..3420125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t2Gvermi12103.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3418836..3420125 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12103.t2 ID=Gvermi12103.t2|Name=Gvermi12103.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=430bp
MASPLLCRAARALSASAPPPSSARARAALRALSGSASSASQRASADYYDL
LGVSRDASPSEIKKAYYRLAKNHHPDTSNGDRDTFAQVNHAYQTLSDKNK
RRIYDRFGEEGVRAADQGADPAAAAAGATGQYATPDIDEVLREFGQFFTG
RQVQRPAVDDPLPGDDKHAVVTLSLKEAAFGVSKQVRTHSVDTCHQCAGS
GKTASTSITRCSQCSGEGRVRTTAGMFQSVIMSCHRCNGTGDIMRDPCST
CDGDGVVGAFKDASVSFPPGCDTGMVLRVPGAGATGIRRGPPGDLFIQVK
VKEDDYFHRSGKDLHVVAPITFAQAALGGTVEVRTLDGTESVSVRPGTQP
DDTYVLHGRAMRGVNSPRRGNQVVHFKIVVPEDLTTRQKQLITELLEEDG
GKITKPEDCAPQSLLQRFQRFLRRTISPS*
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spliced messenger RNA

>Gvermi12103.t2 ID=Gvermi12103.t2|Name=Gvermi12103.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:3418836..3420125- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCCTCTGCTTTGTCGCGCCGCTCGCGCACTCTCTGCCTCCGC
CCCGCCTCCCTCGTCCGCCCGCGCCCGCGCAGCTCTGCGAGCGCTCTCCG
GCTCTGCAAGCTCCGCCTCCCAACGCGCATCCGCCGATTACTACGACCTA
CTAGGCGTCTCGCGCGACGCCTCTCCGTCAGAGATCAAGAAGGCCTACTA
TCGCTTGGCTAAGAATCATCACCCTGATACGTCCAACGGCGACCGCGACA
CATTCGCCCAGGTGAACCACGCGTACCAGACCCTTTCTGACAAGAACAAG
CGTCGCATCTACGACCGTTTTGGGGAAGAAGGCGTCCGTGCCGCTGACCA
GGGCGCCGATCCTGCTGCTGCGGCAGCTGGCGCCACTGGTCAGTATGCCA
CACCTGATATCGACGAAGTTCTGCGCGAATTTGGCCAGTTCTTTACAGGG
CGGCAAGTTCAGCGCCCCGCCGTTGACGATCCTCTGCCTGGCGATGACAA
GCATGCAGTCGTCACGCTCTCATTGAAGGAAGCCGCCTTTGGTGTCAGCA
AGCAGGTGCGAACCCACTCTGTTGATACGTGCCATCAGTGTGCTGGTTCG
GGCAAGACCGCATCAACGAGTATAACTCGTTGCTCGCAGTGCTCCGGCGA
AGGGCGCGTGCGCACAACCGCTGGCATGTTCCAAAGTGTTATCATGTCAT
GCCATCGTTGTAACGGAACAGGCGACATCATGCGTGACCCTTGCTCTACA
TGTGATGGCGATGGCGTCGTAGGTGCTTTCAAGGATGCGTCTGTCTCTTT
CCCGCCCGGGTGCGATACTGGCATGGTGCTTCGCGTTCCGGGCGCTGGAG
CCACTGGCATCAGGAGGGGGCCCCCGGGCGACCTCTTTATTCAGGTCAAA
GTTAAAGAAGACGACTATTTCCATCGGAGCGGTAAGGATTTACACGTCGT
TGCTCCTATTACTTTCGCGCAGGCCGCTCTGGGCGGCACCGTCGAAGTGC
GAACACTAGATGGTACAGAGAGTGTATCGGTACGACCAGGCACGCAACCT
GATGACACGTACGTCCTACACGGCCGTGCAATGCGCGGTGTCAACAGCCC
GCGCCGTGGGAACCAAGTCGTTCATTTCAAGATTGTTGTGCCTGAAGATC
TCACCACACGCCAAAAGCAACTCATCACAGAACTTCTAGAAGAGGATGGG
GGGAAAATAACAAAACCAGAAGATTGCGCGCCCCAATCTTTACTCCAACG
TTTTCAACGTTTCTTGCGAAGAACAATATCACCGAGTTAG
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protein sequence of Gvermi12103.t2

>Gvermi12103.t2 ID=Gvermi12103.t2|Name=Gvermi12103.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=430bp
MASPLLCRAARALSASAPPPSSARARAALRALSGSASSASQRASADYYDL
LGVSRDASPSEIKKAYYRLAKNHHPDTSNGDRDTFAQVNHAYQTLSDKNK
RRIYDRFGEEGVRAADQGADPAAAAAGATGQYATPDIDEVLREFGQFFTG
RQVQRPAVDDPLPGDDKHAVVTLSLKEAAFGVSKQVRTHSVDTCHQCAGS
GKTASTSITRCSQCSGEGRVRTTAGMFQSVIMSCHRCNGTGDIMRDPCST
CDGDGVVGAFKDASVSFPPGCDTGMVLRVPGAGATGIRRGPPGDLFIQVK
VKEDDYFHRSGKDLHVVAPITFAQAALGGTVEVRTLDGTESVSVRPGTQP
DDTYVLHGRAMRGVNSPRRGNQVVHFKIVVPEDLTTRQKQLITELLEEDG
GKITKPEDCAPQSLLQRFQRFLRRTISPS*
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mRNA from alignment at ScGOVlb_3404:3418836..3420125-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12103.t2 ID=Gvermi12103.t2|Name=Gvermi12103.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:3418836..3420125- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCGCCTCTGCTTTGTCGCGCCGCTCGCGCACTCTCTGCCTCCGC
CCCGCCTCCCTCGTCCGCCCGCGCCCGCGCAGCTCTGCGAGCGCTCTCCG
GCTCTGCAAGCTCCGCCTCCCAACGCGCATCCGCCGATTACTACGACCTA
CTAGGCGTCTCGCGCGACGCCTCTCCGTCAGAGATCAAGAAGGCCTACTA
TCGCTTGGCTAAGAATCATCACCCTGATACGTCCAACGGCGACCGCGACA
CATTCGCCCAGGTGAACCACGCGTACCAGACCCTTTCTGACAAGAACAAG
CGTCGCATCTACGACCGTTTTGGGGAAGAAGGCGTCCGTGCCGCTGACCA
GGGCGCCGATCCTGCTGCTGCGGCAGCTGGCGCCACTGGTCAGTATGCCA
CACCTGATATCGACGAAGTTCTGCGCGAATTTGGCCAGTTCTTTACAGGG
CGGCAAGTTCAGCGCCCCGCCGTTGACGATCCTCTGCCTGGCGATGACAA
GCATGCAGTCGTCACGCTCTCATTGAAGGAAGCCGCCTTTGGTGTCAGCA
AGCAGGTGCGAACCCACTCTGTTGATACGTGCCATCAGTGTGCTGGTTCG
GGCAAGACCGCATCAACGAGTATAACTCGTTGCTCGCAGTGCTCCGGCGA
AGGGCGCGTGCGCACAACCGCTGGCATGTTCCAAAGTGTTATCATGTCAT
GCCATCGTTGTAACGGAACAGGCGACATCATGCGTGACCCTTGCTCTACA
TGTGATGGCGATGGCGTCGTAGGTGCTTTCAAGGATGCGTCTGTCTCTTT
CCCGCCCGGGTGCGATACTGGCATGGTGCTTCGCGTTCCGGGCGCTGGAG
CCACTGGCATCAGGAGGGGGCCCCCGGGCGACCTCTTTATTCAGGTCAAA
GTTAAAGAAGACGACTATTTCCATCGGAGCGGTAAGGATTTACACGTCGT
TGCTCCTATTACTTTCGCGCAGGCCGCTCTGGGCGGCACCGTCGAAGTGC
GAACACTAGATGGTACAGAGAGTGTATCGGTACGACCAGGCACGCAACCT
GATGACACGTACGTCCTACACGGCCGTGCAATGCGCGGTGTCAACAGCCC
GCGCCGTGGGAACCAAGTCGTTCATTTCAAGATTGTTGTGCCTGAAGATC
TCACCACACGCCAAAAGCAACTCATCACAGAACTTCTAGAAGAGGATGGG
GGGAAAATAACAAAACCAGAAGATTGCGCGCCCCAATCTTTACTCCAACG
TTTTCAACGTTTCTTGCGAAGAACAATATCACCGAGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3418836..3420125-

>Gvermi12103.t2 ID=Gvermi12103.t2|Name=Gvermi12103.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1290bp|location=Sequence derived from alignment at ScGOVlb_3404:3418836..3420125- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCGCCTCTGCTTTGTCGCGCCGCTCGCGCACTCTCTGCCTCCGC
CCCGCCTCCCTCGTCCGCCCGCGCCCGCGCAGCTCTGCGAGCGCTCTCCG
GCTCTGCAAGCTCCGCCTCCCAACGCGCATCCGCCGATTACTACGACCTA
CTAGGCGTCTCGCGCGACGCCTCTCCGTCAGAGATCAAGAAGGCCTACTA
TCGCTTGGCTAAGAATCATCACCCTGATACGTCCAACGGCGACCGCGACA
CATTCGCCCAGGTGAACCACGCGTACCAGACCCTTTCTGACAAGAACAAG
CGTCGCATCTACGACCGTTTTGGGGAAGAAGGCGTCCGTGCCGCTGACCA
GGGCGCCGATCCTGCTGCTGCGGCAGCTGGCGCCACTGGTCAGTATGCCA
CACCTGATATCGACGAAGTTCTGCGCGAATTTGGCCAGTTCTTTACAGGG
CGGCAAGTTCAGCGCCCCGCCGTTGACGATCCTCTGCCTGGCGATGACAA
GCATGCAGTCGTCACGCTCTCATTGAAGGAAGCCGCCTTTGGTGTCAGCA
AGCAGGTGCGAACCCACTCTGTTGATACGTGCCATCAGTGTGCTGGTTCG
GGCAAGACCGCATCAACGAGTATAACTCGTTGCTCGCAGTGCTCCGGCGA
AGGGCGCGTGCGCACAACCGCTGGCATGTTCCAAAGTGTTATCATGTCAT
GCCATCGTTGTAACGGAACAGGCGACATCATGCGTGACCCTTGCTCTACA
TGTGATGGCGATGGCGTCGTAGGTGCTTTCAAGGATGCGTCTGTCTCTTT
CCCGCCCGGGTGCGATACTGGCATGGTGCTTCGCGTTCCGGGCGCTGGAG
CCACTGGCATCAGGAGGGGGCCCCCGGGCGACCTCTTTATTCAGGTCAAA
GTTAAAGAAGACGACTATTTCCATCGGAGCGGTAAGGATTTACACGTCGT
TGCTCCTATTACTTTCGCGCAGGCCGCTCTGGGCGGCACCGTCGAAGTGC
GAACACTAGATGGTACAGAGAGTGTATCGGTACGACCAGGCACGCAACCT
GATGACACGTACGTCCTACACGGCCGTGCAATGCGCGGTGTCAACAGCCC
GCGCCGTGGGAACCAAGTCGTTCATTTCAAGATTGTTGTGCCTGAAGATC
TCACCACACGCCAAAAGCAACTCATCACAGAACTTCTAGAAGAGGATGGG
GGGAAAATAACAAAACCAGAAGATTGCGCGCCCCAATCTTTACTCCAACG
TTTTCAACGTTTCTTGCGAAGAACAATATCACCGAGTTAG
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