Gvermi12284.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12284.t1
Unique NameGvermi12284.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4092198..4092548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1449044.JMLE01000034_gene2067
Preferred nameuraH
PFAMsTransthyretin
Max annot lvl201174|Actinobacteria
KEGG rclassRC03393
KEGG koko:K07127
KEGG TC9.B.35.1.2,9.B.35.2
KEGG ReactionR06601
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Evalue4.89e-35
EggNOG OGsCOG2351@1|root,COG2351@2|Bacteria,2IQUN@201174|Actinobacteria,1W9S6@1268|Micrococcaceae
EC3.5.2.17
DescriptionBelongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12284Gvermi12284Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4092198..4092548 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12284.t1.stop1Gvermi12284.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4092198..4092200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12284.t1.CDS1Gvermi12284.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4092198..4092548 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12284.t1.exon1Gvermi12284.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4092198..4092548 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12284.t1.start1Gvermi12284.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4092546..4092548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12284.t1Gvermi12284.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4092198..4092548 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12284.t1 ID=Gvermi12284.t1|Name=Gvermi12284.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=117bp
MSKSPLTTHALDTSLGKPAAGLEVVLFRIWSENEATLITSKVCDRDGRVN
DLMSDPQLWIPGTYRLRFATAKYYEGQGQRSFYPHVDITFVVKELSEHYH
VPLLLSPFGYSTYRGS*
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spliced messenger RNA

>Gvermi12284.t1 ID=Gvermi12284.t1|Name=Gvermi12284.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=351bp|location=Sequence derived from alignment at ScGOVlb_3404:4092198..4092548- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAAAGCCCCCTCACAACTCACGCGTTGGATACATCGTTGGGAAA
GCCAGCCGCTGGTCTTGAAGTTGTACTGTTTCGCATATGGTCAGAAAATG
AGGCGACCCTCATCACATCGAAAGTGTGCGACAGAGATGGTCGCGTAAAC
GATTTGATGTCTGATCCTCAGTTATGGATCCCCGGTACATATCGATTGCG
TTTCGCAACTGCCAAATATTATGAAGGACAAGGACAAAGAAGTTTCTATC
CTCACGTAGATATTACGTTCGTGGTAAAAGAGCTCTCCGAACATTATCAC
GTCCCTCTTCTTCTCAGTCCTTTTGGTTACAGTACTTATCGCGGCTCCTG
A
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protein sequence of Gvermi12284.t1

>Gvermi12284.t1 ID=Gvermi12284.t1|Name=Gvermi12284.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=117bp
MSKSPLTTHALDTSLGKPAAGLEVVLFRIWSENEATLITSKVCDRDGRVN
DLMSDPQLWIPGTYRLRFATAKYYEGQGQRSFYPHVDITFVVKELSEHYH
VPLLLSPFGYSTYRGS*
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mRNA from alignment at ScGOVlb_3404:4092198..4092548-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12284.t1 ID=Gvermi12284.t1|Name=Gvermi12284.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=351bp|location=Sequence derived from alignment at ScGOVlb_3404:4092198..4092548- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCAAAAGCCCCCTCACAACTCACGCGTTGGATACATCGTTGGGAAA
GCCAGCCGCTGGTCTTGAAGTTGTACTGTTTCGCATATGGTCAGAAAATG
AGGCGACCCTCATCACATCGAAAGTGTGCGACAGAGATGGTCGCGTAAAC
GATTTGATGTCTGATCCTCAGTTATGGATCCCCGGTACATATCGATTGCG
TTTCGCAACTGCCAAATATTATGAAGGACAAGGACAAAGAAGTTTCTATC
CTCACGTAGATATTACGTTCGTGGTAAAAGAGCTCTCCGAACATTATCAC
GTCCCTCTTCTTCTCAGTCCTTTTGGTTACAGTACTTATCGCGGCTCCTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4092198..4092548-

>Gvermi12284.t1 ID=Gvermi12284.t1|Name=Gvermi12284.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=351bp|location=Sequence derived from alignment at ScGOVlb_3404:4092198..4092548- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCAAAAGCCCCCTCACAACTCACGCGTTGGATACATCGTTGGGAAA
GCCAGCCGCTGGTCTTGAAGTTGTACTGTTTCGCATATGGTCAGAAAATG
AGGCGACCCTCATCACATCGAAAGTGTGCGACAGAGATGGTCGCGTAAAC
GATTTGATGTCTGATCCTCAGTTATGGATCCCCGGTACATATCGATTGCG
TTTCGCAACTGCCAAATATTATGAAGGACAAGGACAAAGAAGTTTCTATC
CTCACGTAGATATTACGTTCGTGGTAAAAGAGCTCTCCGAACATTATCAC
GTCCCTCTTCTTCTCAGTCCTTTTGGTTACAGTACTTATCGCGGCTCCTG
A
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