Gvermi12514.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12514.t1
Unique NameGvermi12514.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:6000093..6001706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1463900.JOIX01000021_gene7265
PFAMsGMC_oxred_C,GMC_oxred_N
Max annot lvl201174|Actinobacteria
KEGG rclassRC00087
KEGG koko:K00108
KEGG ReactionR01025
KEGG Pathwayko00260,ko01100,map00260,map01100
KEGG ModuleM00555
Evalue3.36e-32
EggNOG OGsCOG2303@1|root,COG2303@2|Bacteria,2GJAU@201174|Actinobacteria
EC1.1.99.1
DescriptionInvolved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12514Gvermi12514Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 6000093..6001706 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12514.t1.start1Gvermi12514.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 6000093..6000095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12514.t1.CDS1Gvermi12514.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 6000093..6001706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12514.t1.exon1Gvermi12514.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 6000093..6001706 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12514.t1.stop1Gvermi12514.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 6001704..6001706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12514.t1Gvermi12514.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 6000093..6001706 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=538bp
MRAHLLMFCVLLLQLIFPLHAAAAQHTAHIVIAGAGTAGCPLAARLCVAL
PHKKITLLERAAPRSAQAEFFVRAPRNLFSTWSAPELLETFPSLVNPALN
RSHDVLTGRTLGGTSAITGMQWSVPLNGSIEDWRIHGLDTAIAAQYFQRA
YDQLSVSPPRQRLRYAQAYVDAAVRSGLRRSSHHLDGEMRAVWHNFLTID
RNLRRTDACSAYIQPLLNGACKHNLHLVQNVTVTSVRFSRRHRGGQLQAT
GVHALQTLPNNSSVQRTFVARDETILSAGPYGSAKILQLSGIGPADVLRA
ANVSVRVELPVGQNTLCSSSIGVSSVYTGVPNEPVNNFTLVNDPQQRKRW
ERGESSVLGTAVSAANGRVGADGYFGSSFVPFWPDVPEVYSYCHLNSQSR
GFMAIRDANPFSPPIVQNNLMGTPGEYNRIRRCLEQLVSIHNHFPPHFNM
SFTKPEHGQISEDWVRRQLNTGAHFVGACPVGDVVDGHLRVRGVQSLRVI
DSSVLRDLPQSAGPMASVVMVAEFMSDAISKQYQEPC*
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spliced messenger RNA

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:6000093..6001706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCCACTTGCTCATGTTCTGTGTGTTGCTCCTGCAGCTGATCTT
CCCGTTGCATGCCGCTGCAGCGCAGCACACGGCCCACATCGTCATCGCCG
GTGCCGGCACTGCCGGTTGTCCGCTTGCCGCACGTCTCTGCGTCGCCCTT
CCTCACAAGAAGATCACGCTGCTGGAGCGCGCCGCTCCACGTTCTGCACA
AGCCGAGTTCTTCGTTCGCGCGCCACGAAACCTGTTCTCAACTTGGTCAG
CGCCCGAGTTGCTTGAAACCTTTCCCTCGCTCGTCAATCCCGCACTCAAC
AGGTCGCATGACGTGCTCACCGGTCGAACACTCGGCGGCACCTCCGCCAT
CACCGGCATGCAGTGGAGCGTCCCGCTGAACGGTTCCATTGAGGACTGGC
GCATTCACGGCCTTGACACTGCTATTGCTGCGCAATACTTCCAGCGCGCT
TACGACCAACTGTCTGTTTCACCGCCTCGTCAGCGCCTTCGTTACGCGCA
GGCGTATGTAGACGCCGCCGTGCGCTCTGGCTTGCGCCGCTCATCACATC
ATCTAGACGGAGAAATGCGCGCTGTTTGGCACAATTTTCTCACCATCGAT
CGCAACCTCCGTCGCACCGACGCCTGCAGCGCCTACATCCAACCGTTGTT
GAACGGCGCCTGTAAACACAACCtgcatctagttcaaaacgtcaccgtca
catccgtgcgctttagtcgtcgtcaccgaggcggacaattgcaagctact
ggtgtgcacgccttgcaaacgctgccaaacaactcttcggtgcagaggac
atttgtggcccgcgacgagaccattctgtcggcaggcccttacggcagtg
ccaaaatcctgcagctgtcgggcatcggacccgcggacgtgctgcgcgcc
gccaacgtgtcggttcgagtgGAGTTGCCGGTGGGACAGAACACTTTGTG
CAGTTCGTCAATTGGTGTATCGTCCGTGTACACCGGCGTTCCCAACGAGC
CTGTCAACAACTTTACGCTCGTCAATGACCCGCAGCAACGCAAAAGATGG
GAGCGAGGTGAATCAAGCGTGCTGGGCACCGCTGTGTCAGCGGCTAACGG
CCGCGTCGGCGCCGATGGCTACTTCGGGTCGTCTTTCGTCCCCTTTTGGC
CGGACGTCCCGGAAGTGTACTCCTACTGCCATCTCAACTCGCAGTCGAGG
GGCTTCATGGCAATCCGCGACGCGAACCCATTCTCGCCCCCCATCGTGCA
GAACAATCTCATGGGCACGCCGGGCGAGTACAATCGCATTCGACGTTGTC
TTGAACAGCTTGTCAGCATTCACAATCACTTTCCGCCGCATTTCAACATG
AGCTTCACCAAGCCAGAGCACGGCCAAATCTCTGAGGACTGGGTGCGACG
CCAACTTAACACGGGGGCACATTTCGTCGGCGCATGCCCTGTTGGCGACG
TTGTTGATGGCCATTTGCGAGTAAGAGGTGTGCAATCTCTGCGCGTCATT
GATTCTTCTGTGCTAAGAGATttgccacagtccgccggccctatggcgtc
ggtggttatggtcgcagagttcatgtcagatgcgatatccaagcaatatc
aagagccgtgttga
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protein sequence of Gvermi12514.t1

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MRAHLLMFCVLLLQLIFPLHAAAAQHTAHIVIAGAGTAGCPLAARLCVAL
PHKKITLLERAAPRSAQAEFFVRAPRNLFSTWSAPELLETFPSLVNPALN
RSHDVLTGRTLGGTSAITGMQWSVPLNGSIEDWRIHGLDTAIAAQYFQRA
YDQLSVSPPRQRLRYAQAYVDAAVRSGLRRSSHHLDGEMRAVWHNFLTID
RNLRRTDACSAYIQPLLNGACKHNLHLVQNVTVTSVRFSRRHRGGQLQAT
GVHALQTLPNNSSVQRTFVARDETILSAGPYGSAKILQLSGIGPADVLRA
ANVSVRVELPVGQNTLCSSSIGVSSVYTGVPNEPVNNFTLVNDPQQRKRW
ERGESSVLGTAVSAANGRVGADGYFGSSFVPFWPDVPEVYSYCHLNSQSR
GFMAIRDANPFSPPIVQNNLMGTPGEYNRIRRCLEQLVSIHNHFPPHFNM
SFTKPEHGQISEDWVRRQLNTGAHFVGACPVGDVVDGHLRVRGVQSLRVI
DSSVLRDLPQSAGPMASVVMVAEFMSDAISKQYQEPC*
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mRNA from alignment at ScGOVlb_3404:6000093..6001706+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:6000093..6001706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCCACTTGCTCATGTTCTGTGTGTTGCTCCTGCAGCTGATCTT
CCCGTTGCATGCCGCTGCAGCGCAGCACACGGCCCACATCGTCATCGCCG
GTGCCGGCACTGCCGGTTGTCCGCTTGCCGCACGTCTCTGCGTCGCCCTT
CCTCACAAGAAGATCACGCTGCTGGAGCGCGCCGCTCCACGTTCTGCACA
AGCCGAGTTCTTCGTTCGCGCGCCACGAAACCTGTTCTCAACTTGGTCAG
CGCCCGAGTTGCTTGAAACCTTTCCCTCGCTCGTCAATCCCGCACTCAAC
AGGTCGCATGACGTGCTCACCGGTCGAACACTCGGCGGCACCTCCGCCAT
CACCGGCATGCAGTGGAGCGTCCCGCTGAACGGTTCCATTGAGGACTGGC
GCATTCACGGCCTTGACACTGCTATTGCTGCGCAATACTTCCAGCGCGCT
TACGACCAACTGTCTGTTTCACCGCCTCGTCAGCGCCTTCGTTACGCGCA
GGCGTATGTAGACGCCGCCGTGCGCTCTGGCTTGCGCCGCTCATCACATC
ATCTAGACGGAGAAATGCGCGCTGTTTGGCACAATTTTCTCACCATCGAT
CGCAACCTCCGTCGCACCGACGCCTGCAGCGCCTACATCCAACCGTTGTT
GAACGGCGCCTGTAAACACAACCtgcatctagttcaaaacgtcaccgtca
catccgtgcgctttagtcgtcgtcaccgaggcggacaattgcaagctact
ggtgtgcacgccttgcaaacgctgccaaacaactcttcggtgcagaggac
atttgtggcccgcgacgagaccattctgtcggcaggcccttacggcagtg
ccaaaatcctgcagctgtcgggcatcggacccgcggacgtgctgcgcgcc
gccaacgtgtcggttcgagtgGAGTTGCCGGTGGGACAGAACACTTTGTG
CAGTTCGTCAATTGGTGTATCGTCCGTGTACACCGGCGTTCCCAACGAGC
CTGTCAACAACTTTACGCTCGTCAATGACCCGCAGCAACGCAAAAGATGG
GAGCGAGGTGAATCAAGCGTGCTGGGCACCGCTGTGTCAGCGGCTAACGG
CCGCGTCGGCGCCGATGGCTACTTCGGGTCGTCTTTCGTCCCCTTTTGGC
CGGACGTCCCGGAAGTGTACTCCTACTGCCATCTCAACTCGCAGTCGAGG
GGCTTCATGGCAATCCGCGACGCGAACCCATTCTCGCCCCCCATCGTGCA
GAACAATCTCATGGGCACGCCGGGCGAGTACAATCGCATTCGACGTTGTC
TTGAACAGCTTGTCAGCATTCACAATCACTTTCCGCCGCATTTCAACATG
AGCTTCACCAAGCCAGAGCACGGCCAAATCTCTGAGGACTGGGTGCGACG
CCAACTTAACACGGGGGCACATTTCGTCGGCGCATGCCCTGTTGGCGACG
TTGTTGATGGCCATTTGCGAGTAAGAGGTGTGCAATCTCTGCGCGTCATT
GATTCTTCTGTGCTAAGAGATttgccacagtccgccggccctatggcgtc
ggtggttatggtcgcagagttcatgtcagatgcgatatccaagcaatatc
aagagccgtgttga
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Coding sequence (CDS) from alignment at ScGOVlb_3404:6000093..6001706+

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:6000093..6001706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCCACTTGCTCATGTTCTGTGTGTTGCTCCTGCAGCTGATCTT
CCCGTTGCATGCCGCTGCAGCGCAGCACACGGCCCACATCGTCATCGCCG
GTGCCGGCACTGCCGGTTGTCCGCTTGCCGCACGTCTCTGCGTCGCCCTT
CCTCACAAGAAGATCACGCTGCTGGAGCGCGCCGCTCCACGTTCTGCACA
AGCCGAGTTCTTCGTTCGCGCGCCACGAAACCTGTTCTCAACTTGGTCAG
CGCCCGAGTTGCTTGAAACCTTTCCCTCGCTCGTCAATCCCGCACTCAAC
AGGTCGCATGACGTGCTCACCGGTCGAACACTCGGCGGCACCTCCGCCAT
CACCGGCATGCAGTGGAGCGTCCCGCTGAACGGTTCCATTGAGGACTGGC
GCATTCACGGCCTTGACACTGCTATTGCTGCGCAATACTTCCAGCGCGCT
TACGACCAACTGTCTGTTTCACCGCCTCGTCAGCGCCTTCGTTACGCGCA
GGCGTATGTAGACGCCGCCGTGCGCTCTGGCTTGCGCCGCTCATCACATC
ATCTAGACGGAGAAATGCGCGCTGTTTGGCACAATTTTCTCACCATCGAT
CGCAACCTCCGTCGCACCGACGCCTGCAGCGCCTACATCCAACCGTTGTT
GAACGGCGCCTGTAAACACAACCtgcatctagttcaaaacgtcaccgtca
catccgtgcgctttagtcgtcgtcaccgaggcggacaattgcaagctact
ggtgtgcacgccttgcaaacgctgccaaacaactcttcggtgcagaggac
atttgtggcccgcgacgagaccattctgtcggcaggcccttacggcagtg
ccaaaatcctgcagctgtcgggcatcggacccgcggacgtgctgcgcgcc
gccaacgtgtcggttcgagtgGAGTTGCCGGTGGGACAGAACACTTTGTG
CAGTTCGTCAATTGGTGTATCGTCCGTGTACACCGGCGTTCCCAACGAGC
CTGTCAACAACTTTACGCTCGTCAATGACCCGCAGCAACGCAAAAGATGG
GAGCGAGGTGAATCAAGCGTGCTGGGCACCGCTGTGTCAGCGGCTAACGG
CCGCGTCGGCGCCGATGGCTACTTCGGGTCGTCTTTCGTCCCCTTTTGGC
CGGACGTCCCGGAAGTGTACTCCTACTGCCATCTCAACTCGCAGTCGAGG
GGCTTCATGGCAATCCGCGACGCGAACCCATTCTCGCCCCCCATCGTGCA
GAACAATCTCATGGGCACGCCGGGCGAGTACAATCGCATTCGACGTTGTC
TTGAACAGCTTGTCAGCATTCACAATCACTTTCCGCCGCATTTCAACATG
AGCTTCACCAAGCCAGAGCACGGCCAAATCTCTGAGGACTGGGTGCGACG
CCAACTTAACACGGGGGCACATTTCGTCGGCGCATGCCCTGTTGGCGACG
TTGTTGATGGCCATTTGCGAGTAAGAGGTGTGCAATCTCTGCGCGTCATT
GATTCTTCTGTGCTAAGAGATttgccacagtccgccggccctatggcgtc
ggtggttatggtcgcagagttcatgtcagatgcgatatccaagcaatatc
aagagccgtgttga
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