Gvermi12218.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12218.t1
Unique NameGvermi12218.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length932
Homology
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A2V3J2X0_9FLOR (AT-rich interactive domain-containing protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2X0_9FLOR)

HSP 1 Score: 790 bits (2039), Expect = 1.480e-271
Identity = 397/632 (62.82%), Postives = 502/632 (79.43%), Query Frame = 0
Query:  217 RVDILSLEVVECPLQKDGRHTIICGRLPDNHPYAIAARRLGRYLISKQFAGVQECTSKVERRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDRMPQDVNRKLDMKQMAMEEKLKERKAAERLARMAASKKRSSGSLDLLLDVGDCTDLLDEDGFLDREDPRLKRILLAVSDRPRVALKYLDLILGSDIEDLLIPELEDASMD---DGSFQIVLQDIVQMDELEQVETGADAVLLAFAECLTLVTLGLDTSFERPKDLGLGKAICILTFCSPNMKRGLGLLIGSIIKASKIPSFLQLADKNSTHGLIDGLFYLIYRYLRNESTEDEEY--EASEVDVLSAAYCALSAIQVLIDEEQNRAAVITNVGFRHAVGRFLGYEECSRSFLLVMLDIIAKCCSMMADMLSERDMDLFVNSLVQRLEMATGLDPEETLEHEMKKTLEAPPDYEISSKVLPILVTLARKMGIRCRNSGRLIELCVRMLHCQERIADNTNLALVVYTIVERFPSMIGSNRDLVRGVLKLIRDATCVDIASETLIVINRIWPVRELVLESGLFSGWKHCDVDRDAPLTHLME 843
            RVDILSL+VV+ PLQKDGRHTIICGRLPDN+PYAIAAR LG+ ++SK+ +G Q C  + ERR NF KDWKAFHEEL G +PK PVIGGGELDI+SL HEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYE+LL+YYE KLVHDRMPQDV+RKLDMK+MAMEEK +ERKA ERLARM  +KKR+ GS+DLL+D+GDCTD++ E G  +REDPR+KRI+LAVS+RP V + YLDLI+G DIEDL++PE  D   D   D S +++L++ +QMD+ +QV++G D V LA AECL   +L +  S    KDLGL +A+C L F SPNM R LGL+I  ++K SK P  L L+++ ST+GL+DGLFYLI+RY R +    +EY   AS  +VLSAA+C+LS IQ ++ E+QNR+ VI+NVGFRH V RFLG E  +RSFLLV+LDII  C ++M ++L + DMDLF++SL++RLE+ATG+DPE  +E E++K +E  PDYE+SSKVLPILVTL R MG + RN GRL+ LCVR++HCQER+ADNT+LALV++T+ ER P ++  +++ VRGV KLIRD TCVD+A+E LI+INR+  +RE  +ESGLF  WK C  + D  L H ++
Sbjct:  228 RVDILSLDVVDSPLQKDGRHTIICGRLPDNNPYAIAARGLGQKMVSKKHSGFQTCEVESERRLNFLKDWKAFHEELLGYVPKRPVIGGGELDIFSLAHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYERLLFYYEGKLVHDRMPQDVSRKLDMKRMAMEEKERERKAVERLARMMLNKKRNHGSVDLLIDIGDCTDVV-ESGCFNREDPRVKRIMLAVSERPDVTMNYLDLIVGQDIEDLMLPEWNDTCDDTDSDESLRVMLREALQMDQQDQVQSGTDVVFLALAECLQPSSLQVTGSSAMAKDLGLARALCTLPFSSPNMSRALGLMIMIVMKISKTPLLLLLSERKSTYGLLDGLFYLIHRYTRIKRGGQDEYGYSASNDEVLSAAFCSLSVIQAMLKEQQNRSKVISNVGFRHVVARFLGGELLNRSFLLVILDIITTCTTLMVELLGDADMDLFLSSLLRRLELATGVDPEVAVEEEIEKEIEVAPDYEVSSKVLPILVTLTRHMGSKSRNVGRLLALCVRLMHCQERVADNTSLALVIFTVTERLPKIVAKDKEFVRGVFKLIRDPTCVDVAAEALIIINRVCSIREFAVESGLFEAWKTCSENEDNALAHFVD 858          
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A2V3IYD2_9FLOR (AT-rich interactive domain-containing protein cfi-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYD2_9FLOR)

HSP 1 Score: 143 bits (361), Expect = 3.730e-33
Identity = 69/152 (45.39%), Postives = 103/152 (67.76%), Query Frame = 0
Query:  216 LRVDILSLEVVECPLQKDGRHTIICGRLPDNHPYAIAARRLGRYLISKQFAGVQECTSKVERRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLV 367
            L VDI+++ VV CPL K G   IICGR  DN P   AA  LG  ++S  +   +   + + RR++F  DWKAFH E++G++P+LP + G +LD++    +VLLLGG+  V++KR F V+A+QL L K CTSAA VL+ A++ L++ YE++L+
Sbjct:   63 LPVDIMTMPVVPCPLIKLGNRVIICGRYSDNEPCVKAANSLGVLMLSSTYTNCKP-PAAITRRDSFIADWKAFHYEMYGLVPRLPTVSGSKLDLFLFAEQVLLLGGIDTVIEKRGFVVLAKQLCLSKPCTSAAVVLRRAHQSLMHQYEQRLI 213          
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A1X6PJV0_PORUM (ARID domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJV0_PORUM)

HSP 1 Score: 116 bits (291), Expect = 9.570e-23
Identity = 69/155 (44.52%), Postives = 91/155 (58.71%), Query Frame = 0
Query:  229 PLQKDGRHTIICGRLPDNHPYAIAARRLGRYLISKQFAGVQECTSKVE-------------RRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDR 370
            PL+K+GR+ +I GRLP + PY  A   +G   +S + +G+                     R   F  D  AF  E      K+PV+GGG L+I+ L  EV  LGGV NV+ KRAFRVVA +L+LP++CTSAA VL+NA+E LLY YE+KLV  R
Sbjct:  532 PLRKEGRNLVITGRLPTSSPYQQALDSVGIRFVSAKLSGIGPGAPPXXXXXXXXXXXGVGGREAAFLADHAAFMFERGQASFKVPVVGGGPLNIFRLFVEVCKLGGVENVLNKRAFRVVAGELDLPRTCTSAAFVLRNAHESLLYAYEQKLVFGR 686          
BLAST of Gvermi12218.t1 vs. uniprot
Match: M2XJD9_GALSU (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XJD9_GALSU)

HSP 1 Score: 91.7 bits (226), Expect = 2.480e-15
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 0
Query:  256 LGRYLISKQFAGVQECTSKVERRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDRMPQDV 375
            +G Y IS+    +++     +RR NF +D  A+  E+     K+P +GG  LD++ L  EV+  GGV +V+  R F+ +++ L LPK+CT+AA VL+ +YEK+LY+YE+K V  R  ++V
Sbjct:   31 VGTYFISR---ALRDSVPSRDRRRNFLEDLSAYMNEIGRGNFKIPTLGGFTLDVFILYQEVVRRGGVQHVIDNREFKEISKILRLPKTCTAAAFVLRESYEKILYFYEQKHVFGRSAEEV 147          
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A7S3ELY9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELY9_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 1.590e-14
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 0
Query:  249 YAIAARRLGRYLISKQFAGVQECTSKVERRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDR 370
            Y      +GR  IS+Q       +     +++F  D K F  E+  +  K+P +GG  L+IY L  EV+  GG+ NV++ RAF++V ++L LP+SCTSAA +L+ +YEK+LY YE+  V  R
Sbjct:   38 YKAVVPEIGRRFISEQMKNGSMGSGSP--KDDFLADHKHFMTEIGELNFKVPTLGGSPLNIYQLFVEVMDQGGLNNVIETRAFKIVTRKLVLPRSCTSAAYMLRQSYEKILYQYEQHFVFGR 157          
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A7S3A7B0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A7B0_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 7.810e-14
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 0
Query:  249 YAIAARRLGRYLISKQFAGVQECTSKVERRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDR 370
            Y      +GR  IS+Q       +     +++F  D K F  E+  +  K+P +GG  L+IY L  EV+  GG+ NV++ RAF++V ++L LP+SCTSAA +L+ +YEK+LY YE+  V  R
Sbjct:   38 YKAVVPEIGRRFISEQMKNGSMGSGSP--KDDFLADHKHFMTEIGELNFKVPTLGGSPLNIYQLFVEVMDQGGLNNVIETRAFKIVTRKLVLPRSCTSAAYMLRQSYEKILYQYEQHFVFGR 157          
BLAST of Gvermi12218.t1 vs. uniprot
Match: UPI001E1D2F20 (uncharacterized protein LOC123543557 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2F20)

HSP 1 Score: 82.4 bits (202), Expect = 3.720e-13
Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 0
Query:  249 YAIAARRLGRYLISKQFAGVQECTSKVERRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDR 370
            Y  AA   G   +S +   VQ      +RR +F  D + F  E    + ++  IGG  LDIY L   VL  GGV  V   RAF++VA+ L LPKSCTSAA+VL+ +Y + LY YE+K V DR
Sbjct:   10 YRAAAGDAGLRFVSAEMRSVQPTG---DRRQDFLNDHEYFMRENNQDL-RVRTIGGARLDIYGLYVNVLERGGVQAVTTNRAFKMVARALNLPKSCTSAATVLRTSYMEQLYLYEQKHVFDR 127          
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A7S0G5U3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5U3_9RHOD)

HSP 1 Score: 76.6 bits (187), Expect = 4.260e-13
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0
Query:  302 IGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDRMPQ 373
            +GG  L+IY L  EV+  GG+ NV++ RAF++V ++L LP+SCTSAA +L+ +YEK+LY YE+  V  R PQ
Sbjct:    2 LGGSPLNIYQLFVEVMDQGGLNNVIETRAFKIVTRKLVLPRSCTSAAYMLRQSYEKILYQYEQHFVFGRDPQ 73          
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A1X6P609_PORUM (ARID domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P609_PORUM)

HSP 1 Score: 82.4 bits (202), Expect = 2.550e-12
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 0
Query:  248 PYAIAARRLGRYLISKQFAGVQECT---SKVERRNNFCKDWKAFHEELFGVMPKLPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYEEKLVHDRMP 372
            PY  AA   G   +S+            S    R ++  D  AF  +      ++P + G   DIY+L   VL LGG+ +V+  RAF++VA+QL LPKSCTSAA VL+  YE+LL+ YE+  V  R P
Sbjct:   38 PYTTAADNAGTVFVSEALMASPPXXXGPSPASVRRSWAADHAAFMADAGRPDFRVPTVAGSPCDIYALYVAVLRLGGLHSVMANRAFKLVARQLALPKSCTSAAYVLRTTYERLLFDYEQASVWGRRP 165          
BLAST of Gvermi12218.t1 vs. uniprot
Match: A0A1X7U1L0_AMPQE (ARID domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U1L0_AMPQE)

HSP 1 Score: 62.0 bits (149), Expect = 3.650e-6
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0
Query:  284 DWKAFHEELFGVMPK-------LPVIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYEKLLYYYE 363
            D K F ++LF  M K       +P++    LD+Y L   V+  GG++ V+KK+A+R +A++L LP S TSAA  +++ Y K LY YE
Sbjct:  112 DRKDFLDKLFDYMAKKGTPITRIPIMAKQPLDMYKLFKLVVERGGLVEVIKKKAWRDIAKELNLPASITSAAFTMRSQYVKYLYPYE 198          
The following BLAST results are available for this feature:
BLAST of Gvermi12218.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2V3J2X0_9FLOR1.480e-27162.82AT-rich interactive domain-containing protein 2 n=... [more]
A0A2V3IYD2_9FLOR3.730e-3345.39AT-rich interactive domain-containing protein cfi-... [more]
A0A1X6PJV0_PORUM9.570e-2344.52ARID domain-containing protein n=1 Tax=Porphyra um... [more]
M2XJD9_GALSU2.480e-1539.17ARID/BRIGHT DNA binding domain containing protein ... [more]
A0A7S3ELY9_9RHOD1.590e-1439.34Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A7B0_9RHOD7.810e-1439.34Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI001E1D2F203.720e-1343.44uncharacterized protein LOC123543557 n=1 Tax=Merce... [more]
A0A7S0G5U3_9RHOD4.260e-1351.39Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A1X6P609_PORUM2.550e-1239.06ARID domain-containing protein n=1 Tax=Porphyra um... [more]
A0A1X7U1L0_AMPQE3.650e-640.23ARID domain-containing protein n=1 Tax=Amphimedon ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 276..368
e-value: 3.1E-14
score: 63.3
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 278..363
e-value: 4.0E-13
score: 49.9
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 275..367
score: 20.548254
NoneNo IPR availableSMARTSM01014ARID_2coord: 272..363
e-value: 1.7E-17
score: 74.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 869..931
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..152
NoneNo IPR availableCDDcd16100ARIDcoord: 278..363
e-value: 1.15694E-18
score: 79.7092
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 258..387
e-value: 2.9E-22
score: 80.5
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 275..375
IPR045147AT-rich interactive domain-containing protein 3PANTHERPTHR15348AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHTcoord: 105..383

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3873710..3876582 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12218.t1Gvermi12218.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3873710..3876582 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12218.t1 ID=Gvermi12218.t1|Name=Gvermi12218.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=932bp
MNENEDIRGSADPEAHETTVDGDELSRGMFGINIEQGSTLDIPRFHVSSV
NRLPNASDVIFHEPASGSEYAELSHGQCGFDSIDRPLGTQPPTAADSAII
PPQTRSSNEAEHHGVDQPCIPQQEQWPETVGPETHHHPSQTNAETQCLTH
DENFLTPYQGNIQIPYVNGSSSHEEHNHSAPNEESTTYEMSHQDDREGHI
QHFAATKGTPTQQECLRVDILSLEVVECPLQKDGRHTIICGRLPDNHPYA
IAARRLGRYLISKQFAGVQECTSKVERRNNFCKDWKAFHEELFGVMPKLP
VIGGGELDIYSLVHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASV
LKNAYEKLLYYYEEKLVHDRMPQDVNRKLDMKQMAMEEKLKERKAAERLA
RMAASKKRSSGSLDLLLDVGDCTDLLDEDGFLDREDPRLKRILLAVSDRP
RVALKYLDLILGSDIEDLLIPELEDASMDDGSFQIVLQDIVQMDELEQVE
TGADAVLLAFAECLTLVTLGLDTSFERPKDLGLGKAICILTFCSPNMKRG
LGLLIGSIIKASKIPSFLQLADKNSTHGLIDGLFYLIYRYLRNESTEDEE
YEASEVDVLSAAYCALSAIQVLIDEEQNRAAVITNVGFRHAVGRFLGYEE
CSRSFLLVMLDIIAKCCSMMADMLSERDMDLFVNSLVQRLEMATGLDPEE
TLEHEMKKTLEAPPDYEISSKVLPILVTLARKMGIRCRNSGRLIELCVRM
LHCQERIADNTNLALVVYTIVERFPSMIGSNRDLVRGVLKLIRDATCVDI
ASETLIVINRIWPVRELVLESGLFSGWKHCDVDRDAPLTHLMEGLNDGND
QIDKDHDVARMVLLPQDANRKEQAFDGNTADQNGAHCADEGATEPRLAVS
DSEEHSDDNESDDTSVTSMQEGPTGAAHFDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf
IPR045147ARI3A/B/C