Gvermi12399.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12399.t1
Unique NameGvermi12399.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4558830..4559738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702925.1
Preferred nameTIF35
PFAMsRRM_1,eIF3g
Max annot lvl2759|Eukaryota
KEGG koko:K03248,ko:K09594,ko:K20304
KEGG Pathwayko03013,ko04150,ko05211,map03013,map04150,map05211
GOsGO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016032,GO:0016043,GO:0016282,GO:0019080,GO:0019081,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0032984,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0051704,GO:0065003,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075525,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue2.46e-83
EggNOG OGsKOG0122@1|root,KOG0122@2759|Eukaryota
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12399Gvermi12399Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4558830..4559738 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12399.t1.start1Gvermi12399.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4558830..4558832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12399.t1.CDS1Gvermi12399.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4558830..4559738 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12399.t1.exon1Gvermi12399.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4558830..4559738 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12399.t1.stop1Gvermi12399.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4559736..4559738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12399.t1Gvermi12399.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4558830..4559738 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12399.t1 ID=Gvermi12399.t1|Name=Gvermi12399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=303bp
MVPEPEGANVDWGDDPDFPSSGGIPPQEVIHNEDGTKTVIDYGMSDDGYL
SKTSSVIKVEKVTKTVSKAVAARKNWAKFGDCEGKPPGLEKGISTVSIDE
INMEWLANEQNEEEEEEEVNFAQKAQQDIQTQLKMLRFKKRQEERKLGVA
NWAQMMSMQASAKTPNEPPPPGLRTAESSSGAGGKYVPPSKRSGATASAG
DSMYSRDDSATVRISNVSRSTEEADLEELCKRFGPIRRIFLSRDRETGES
KGFAFVAFVNIPDAARCIEKLNGFGYDHLILSVEWSKPKEPRDGESRSGF
GR*
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spliced messenger RNA

>Gvermi12399.t1 ID=Gvermi12399.t1|Name=Gvermi12399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=909bp|location=Sequence derived from alignment at ScGOVlb_3404:4558830..4559738+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACCAGAGCCAGAAGGAGCCAATGTTGACTGGGGAGATGATCCCGA
TTTCCCGTCAAGTGGGGGAATTCCTCCGCAGGAAGTCATTCATAACGAAG
ATGGCACAAAAACTGTCATTGACTACGGTATGAGCGATGACGGTTATCTT
TCAAAAACATCCTCCGTGATAAAAGTAGAAAAGGTTACTAAAACGGTTTC
CAAGGCAGTGGCCGCACGAAAAAACTGGGCAAAGTTTGGCGATTGCGAAG
GAAAACCGCCTGGGTTGGAGAAAGGAATATCAACAGTTTCGATTGATGAG
ATCAACATGGAGTGGTTGGCAAACGAACagaacgaagaagaggaagaaga
ggaagTCAACTTTGCACAGAAAGCGCAACAAGATATTCAAACCCAGCTCA
AGATGCTTCGCTTCAAGAAACGCCAAGAGGAAAGAAAACTTGGTGTGGCA
AATTGGGCGCAGATGATGTCTATGCAAGCATCCGCGAAGACCCCGAACGA
GCCGCCTCCTCCTGGGCTACGTACCGCTGAATCGTCATCAGGAGCAGGAG
GCAAGTATGTTCCTCCCTCGAAACGTAGTGGCGCAACAGCTTCCGCTGGA
GATAGCATGTACTCGAGAGACGACTCTGCAACAGTTCGTATCAGTAATGT
CAGCAGAAGCACTGAAGAGGCTGACCTGGAGGAACTCTGCAAGCGGTTTG
GCCCTATTCGCCGTATTTTCCTCAGCAGAGATCGTGAAACTGGTGAAAGC
AAGGGCTTTGCGTTCGTTGCCTTTGTCAATATTCCTGATGCGGCTCGTTG
TATTGAGAAATTGAATGGGTTTGGATATGACCATCTGATCCTTTCTGTAG
AATGGTCCAAGCCAAAGGAACCACGTGATGGAGAGTCACGGTCTGGATTT
GGGCGTTAG
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protein sequence of Gvermi12399.t1

>Gvermi12399.t1 ID=Gvermi12399.t1|Name=Gvermi12399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=303bp
MVPEPEGANVDWGDDPDFPSSGGIPPQEVIHNEDGTKTVIDYGMSDDGYL
SKTSSVIKVEKVTKTVSKAVAARKNWAKFGDCEGKPPGLEKGISTVSIDE
INMEWLANEQNEEEEEEEVNFAQKAQQDIQTQLKMLRFKKRQEERKLGVA
NWAQMMSMQASAKTPNEPPPPGLRTAESSSGAGGKYVPPSKRSGATASAG
DSMYSRDDSATVRISNVSRSTEEADLEELCKRFGPIRRIFLSRDRETGES
KGFAFVAFVNIPDAARCIEKLNGFGYDHLILSVEWSKPKEPRDGESRSGF
GR*
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mRNA from alignment at ScGOVlb_3404:4558830..4559738+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12399.t1 ID=Gvermi12399.t1|Name=Gvermi12399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=909bp|location=Sequence derived from alignment at ScGOVlb_3404:4558830..4559738+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTACCAGAGCCAGAAGGAGCCAATGTTGACTGGGGAGATGATCCCGA
TTTCCCGTCAAGTGGGGGAATTCCTCCGCAGGAAGTCATTCATAACGAAG
ATGGCACAAAAACTGTCATTGACTACGGTATGAGCGATGACGGTTATCTT
TCAAAAACATCCTCCGTGATAAAAGTAGAAAAGGTTACTAAAACGGTTTC
CAAGGCAGTGGCCGCACGAAAAAACTGGGCAAAGTTTGGCGATTGCGAAG
GAAAACCGCCTGGGTTGGAGAAAGGAATATCAACAGTTTCGATTGATGAG
ATCAACATGGAGTGGTTGGCAAACGAACagaacgaagaagaggaagaaga
ggaagTCAACTTTGCACAGAAAGCGCAACAAGATATTCAAACCCAGCTCA
AGATGCTTCGCTTCAAGAAACGCCAAGAGGAAAGAAAACTTGGTGTGGCA
AATTGGGCGCAGATGATGTCTATGCAAGCATCCGCGAAGACCCCGAACGA
GCCGCCTCCTCCTGGGCTACGTACCGCTGAATCGTCATCAGGAGCAGGAG
GCAAGTATGTTCCTCCCTCGAAACGTAGTGGCGCAACAGCTTCCGCTGGA
GATAGCATGTACTCGAGAGACGACTCTGCAACAGTTCGTATCAGTAATGT
CAGCAGAAGCACTGAAGAGGCTGACCTGGAGGAACTCTGCAAGCGGTTTG
GCCCTATTCGCCGTATTTTCCTCAGCAGAGATCGTGAAACTGGTGAAAGC
AAGGGCTTTGCGTTCGTTGCCTTTGTCAATATTCCTGATGCGGCTCGTTG
TATTGAGAAATTGAATGGGTTTGGATATGACCATCTGATCCTTTCTGTAG
AATGGTCCAAGCCAAAGGAACCACGTGATGGAGAGTCACGGTCTGGATTT
GGGCGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4558830..4559738+

>Gvermi12399.t1 ID=Gvermi12399.t1|Name=Gvermi12399.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=909bp|location=Sequence derived from alignment at ScGOVlb_3404:4558830..4559738+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTACCAGAGCCAGAAGGAGCCAATGTTGACTGGGGAGATGATCCCGA
TTTCCCGTCAAGTGGGGGAATTCCTCCGCAGGAAGTCATTCATAACGAAG
ATGGCACAAAAACTGTCATTGACTACGGTATGAGCGATGACGGTTATCTT
TCAAAAACATCCTCCGTGATAAAAGTAGAAAAGGTTACTAAAACGGTTTC
CAAGGCAGTGGCCGCACGAAAAAACTGGGCAAAGTTTGGCGATTGCGAAG
GAAAACCGCCTGGGTTGGAGAAAGGAATATCAACAGTTTCGATTGATGAG
ATCAACATGGAGTGGTTGGCAAACGAACagaacgaagaagaggaagaaga
ggaagTCAACTTTGCACAGAAAGCGCAACAAGATATTCAAACCCAGCTCA
AGATGCTTCGCTTCAAGAAACGCCAAGAGGAAAGAAAACTTGGTGTGGCA
AATTGGGCGCAGATGATGTCTATGCAAGCATCCGCGAAGACCCCGAACGA
GCCGCCTCCTCCTGGGCTACGTACCGCTGAATCGTCATCAGGAGCAGGAG
GCAAGTATGTTCCTCCCTCGAAACGTAGTGGCGCAACAGCTTCCGCTGGA
GATAGCATGTACTCGAGAGACGACTCTGCAACAGTTCGTATCAGTAATGT
CAGCAGAAGCACTGAAGAGGCTGACCTGGAGGAACTCTGCAAGCGGTTTG
GCCCTATTCGCCGTATTTTCCTCAGCAGAGATCGTGAAACTGGTGAAAGC
AAGGGCTTTGCGTTCGTTGCCTTTGTCAATATTCCTGATGCGGCTCGTTG
TATTGAGAAATTGAATGGGTTTGGATATGACCATCTGATCCTTTCTGTAG
AATGGTCCAAGCCAAAGGAACCACGTGATGGAGAGTCACGGTCTGGATTT
GGGCGTTAG
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