Gvermi12344.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12344.t1
Unique NameGvermi12344.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Homology
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A5J4YUJ7_PORPP (Allophycocyanin alpha chain n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUJ7_PORPP)

HSP 1 Score: 89.7 bits (221), Expect = 1.080e-17
Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 0
Query:   80 AQPITPRAKQLIELQSQNPVFDPHLLNEPLGPIFSQLQAQ------SPPAFVRSWHVADTASVACCIAIDTIAEDADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVIC---ETGLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNY--DSKASRVVRAAFDQLLVYLSAF 267
            A  ++PR  +LI+ Q   P+++     E  G    Q + +      S  A VR+ +    A +A  +      E  D  ++ AR  +L  +PGID+PGG L+P+ RA ACWRD   F RV  Y V     +  L P GL IM+++Y E  VPL+A+  GV  + +  A+ A      +++    V+ AF +L++ L ++
Sbjct:   61 ASALSPRIMELIKQQIAQPIYN----TEACGAFAEQAEKEKRFLSLSELAQVRNKNPPGNAEMAAFL-----EERVDAIVQAARERMLETFPGIDQPGGGLFPAFRAKACWRDFVEFVRVVTYSVALGLEDDFLDPVGLSIMEKLYEEFEVPLDAMVFGVCSLRDVSAEMAKERGFDETEWDLWVKPAFGRLIIALESY 250          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A3R7PCP1_9SYNE (Phycobilisome polypeptide n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A3R7PCP1_9SYNE)

HSP 1 Score: 83.6 bits (205), Expect = 6.300e-16
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 0
Query:  149 ADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICE--TGLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASR-VVRAAFDQLLVYLS 265
            ADQ + KARA++L   P +  PGGAL+P++RA ACWRD   F RV  Y V C   T  +P+G+  ++++Y +MNVP E    G++   +QL +        ++ + ++R  F  L   L+
Sbjct:   70 ADQLVNKARAHLLEAQPQLVEPGGALFPAERAEACWRDCWNFLRVIIYAVACNQSTFTNPQGMAALRELYRQMNVPTE----GMNIALDQLKELVLEGISQESDQQLIRDCFRHLSAQLN 185          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A076H037_9SYNE (Uncharacterized protein n=1 Tax=Synechococcus sp. KORDI-100 TaxID=1280380 RepID=A0A076H037_9SYNE)

HSP 1 Score: 83.2 bits (204), Expect = 8.770e-16
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 0
Query:  145 IAEDADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICE--TGLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASR-VVRAAFDQL 260
            + E ADQ + +ARA++L   P + +PGGAL+P +RA ACWRD   F RV  Y V C   T  +P G+  ++++Y  MNVP E    G+    EQL + A         + ++R  F  L
Sbjct:   66 LGERADQLVNQARAHLLESQPQLVQPGGALFPQERAEACWRDCWNFLRVITYAVACNHSTFTNPGGMDALRELYRRMNVPTE----GMKIALEQLKELALEGVSQTGEQQLIRDCFQHL 180          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A3M9YX39_9CYAN (Phycobilisome protein n=2 Tax=Leptolyngbya sp. IPPAS B-1204 TaxID=2483801 RepID=A0A3M9YX39_9CYAN)

HSP 1 Score: 80.1 bits (196), Expect = 1.280e-14
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 0
Query:  145 IAEDADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICE--TGLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASRVVRAAFDQLLVYLSAF 267
            + +   + +++ARA +L  +P I +PGG L+PS+RA ACWRD   F R   Y +  +     SP GLH M+ +Y E+ VPL+A+  G+  +     +R A          +   FD L+V LS F
Sbjct:   71 LRDQVAEIVDEARAGVLDTFPTITQPGGGLYPSERAEACWRDFWHFLRCITYGIAGQHLDYTSPEGLHYMRLLYQELQVPLDAMVVGLEGIKTASLNRVALGQPD----ALAPYFDHLIVQLSQF 191          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A1Z4L9D2_NOSLI (Phycobilisome protein n=1 Tax=Nostoc linckia NIES-25 TaxID=1091006 RepID=A0A1Z4L9D2_NOSLI)

HSP 1 Score: 80.1 bits (196), Expect = 1.280e-14
Identity = 52/175 (29.71%), Postives = 80/175 (45.71%), Query Frame = 0
Query:  113 FSQLQAQSPPAFVRSWHVAD-----------------TASVACCIAIDTIAED-ADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICETG--LSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASRVVRAAFDQLLVYLSAF 267
            F+Q +   PPA +  +  AD                 + + +  I +  +  D A + +++AR  +L  YP I  PGG L+P++RA ACWRD   F R   Y +        SP GLH M  +Y E+ VPL+A+  G+  +      R   N      + +   FD L+  L+AF
Sbjct:   20 FAQWEQSHPPAAIAIFQAADDNLRYLSDEDVLEIQSLSPNYSALIPVAQLLRDRAAEIVDEARVQVLLTYPEIIEPGGGLYPAERAQACWRDFWHFLRCITYGIAGSHAEYTSPTGLHYMNLLYQELQVPLDAMVLGLKSIKAASLKRCQAN-----DQEITPYFDHLITQLAAF 189          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A076HFW1_9SYNE (Phycobilisome polypeptide n=4 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A076HFW1_9SYNE)

HSP 1 Score: 79.7 bits (195), Expect = 1.700e-14
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 0
Query:  143 DTIAEDADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICETGL--SPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASR-VVRAAFDQL 260
            D++ + +DQ + +AR ++L   P + +PGGAL+P  RA ACWRD   F RV  Y V C      +P G+  ++++Y  MNVP+E    G++    QL ++         +R ++R  F  L
Sbjct:   64 DSLIQRSDQLVNQARGHLLATQPHLVQPGGALYPQDRADACWRDCWNFLRVITYAVACNQSCFTNPSGMAAIRELYRRMNVPIE----GMNIALGQLREKTLEGVSRSNNRQLIRDCFQHL 180          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A7S3EB44_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EB44_9RHOD)

HSP 1 Score: 79.7 bits (195), Expect = 2.990e-14
Identity = 54/182 (29.67%), Postives = 98/182 (53.85%), Query Frame = 0
Query:   88 KQLIELQSQNPVFDPHLLNEPLGPIFSQLQAQSPPAFVRSWHVADTASVACCIAIDTIAEDADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAY-LVICETG-LSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASRVVRAAFDQLLVYLSAF 267
            KQL + Q + P+FD    ++  G  +  L A++   F     +    + A   +   + +  +  + ++R  +L+ +P I   GGAL+P  R+ ACWRD   F RVA+Y   I E+  L+  GL I++++Y E++VPL+A+  G   +  + + R+ ++ + KA  +V  +FD ++  LS F
Sbjct:   43 KQLFQRQKERPIFD----HDRFGGAW--LAAENELRFFSDEELTKIGNAAQRSSASALRDGVESIVAESREKLLKEFPNITEEGGALYPPFRSEACWRDFWHFTRVASYGCTIDESAFLNKDGLGILEEVYRELSVPLDAMLYGTRQLKVE-SQRSVNSEEEKA--IVGRSFDTVITGLSDF 215          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A6I5NHK5_9CYAN (Phycobilisome protein n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5NHK5_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 3.350e-14
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 0
Query:  145 IAEDADQAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICETG--LSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASRVVRAAFDQLLVYLSAF 267
            + ++    +++ARA +L  +P I +PGG L+P++RA ACWRD   F R   Y +  +     S  GLH MQ +Y E+ VPL+A+ TG+  + +  A R        A+  +   FD L+  L  F
Sbjct:   72 LRDEVKDIVDEARASVLSTFPDITQPGGGLYPAERADACWRDFWHFLRCITYGIAGQRTDYTSAEGLHHMQLLYQELQVPLDAMVTGLEGIKQASAKRL-----QTAAAELDPYFDHLITQLKQF 191          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A6P0TF92_9CYAN (Phycobilisome protein n=1 Tax=Cyanothece sp. SIO2G6 TaxID=2607797 RepID=A0A6P0TF92_9CYAN)

HSP 1 Score: 78.6 bits (192), Expect = 5.040e-14
Identity = 56/175 (32.00%), Postives = 77/175 (44.00%), Query Frame = 0
Query:  113 FSQLQAQSPPAFVRSWHVADTASVACC----IAIDTIAEDADQ--------------AIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICETG--LSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASRVVRAAFDQLLVYLSAF 267
            F    A  PP  V+ +  AD           +AI+T+A D  Q               +++AR+ +L  +P I  PGG L+P  RA ACWRD   F R   Y +  +     SP GLH M  +Y E+ VPL+A+  G+  V      R     DS     +   FDQL+  L  F
Sbjct:   22 FESWNATHPPELVQRFQQADDDQYYLTDDDLVAIETLAPDTTQFLPVVRLLRDRAPDIVDEARSTVLSQFPHILEPGGGLYPPMRADACWRDFWHFLRCITYGIAGQHADYTSPTGLHYMNLLYQELQVPLDAMVVGLEGVKTAALKRLE---DSALQVALSPYFDQLIDQLRQF 193          
BLAST of Gvermi12344.t1 vs. uniprot
Match: A0A2T1CM10_9CYAN (Phycobilisome protein n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CM10_9CYAN)

HSP 1 Score: 78.2 bits (191), Expect = 6.190e-14
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 0
Query:  151 QAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVICET--GLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKASRVVRAAFDQLLVYLSAF 267
            + +  ARA +L   PGI  PGG L+P+ RA ACWRD   F R  +Y +  +     S RGL  M+Q+Y E+ VPL+A+  G+    EQL   +   ++  A   ++  FD+L+  +  F
Sbjct:   72 EIVSDARAVVLEANPGITEPGGGLYPAMRAEACWRDFWHFLRCISYGISAQRIDYTSDRGLSYMEQLYQELEVPLDAMVLGL----EQLKVFSLKYFEPAAQNDLQPYFDRLIESMGQF 186          
The following BLAST results are available for this feature:
BLAST of Gvermi12344.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4YUJ7_PORPP1.080e-1731.66Allophycocyanin alpha chain n=1 Tax=Porphyridium p... [more]
A0A3R7PCP1_9SYNE6.300e-1636.67Phycobilisome polypeptide n=2 Tax=unclassified Syn... [more]
A0A076H037_9SYNE8.770e-1637.82Uncharacterized protein n=1 Tax=Synechococcus sp. ... [more]
A0A3M9YX39_9CYAN1.280e-1435.20Phycobilisome protein n=2 Tax=Leptolyngbya sp. IPP... [more]
A0A1Z4L9D2_NOSLI1.280e-1429.71Phycobilisome protein n=1 Tax=Nostoc linckia NIES-... [more]
A0A076HFW1_9SYNE1.700e-1433.88Phycobilisome polypeptide n=4 Tax=unclassified Syn... [more]
A0A7S3EB44_9RHOD2.990e-1429.67Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A6I5NHK5_9CYAN3.350e-1434.40Phycobilisome protein n=1 Tax=Leptolyngbya sp. SIO... [more]
A0A6P0TF92_9CYAN5.040e-1432.00Phycobilisome protein n=1 Tax=Cyanothece sp. SIO2G... [more]
A0A2T1CM10_9CYAN6.190e-1436.13Phycobilisome protein n=1 Tax=Pleurocapsa sp. CCAL... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038719Phycobilisome, alpha/beta subunit superfamilyGENE3D1.10.490.20Phycocyaninscoord: 130..265
e-value: 5.2E-15
score: 57.7
IPR012128Phycobilisome, alpha/beta subunitPFAMPF00502Phycobilisomecoord: 141..260
e-value: 1.9E-16
score: 60.4
NoneNo IPR availablePANTHERPTHR34011PHYCOBILISOME 32.1 KDA LINKER POLYPEPTIDE, PHYCOCYANIN-ASSOCIATED, ROD 2-RELATEDcoord: 141..236
NoneNo IPR availablePANTHERPTHR34011:SF7C-PHYCOCYANIN BETA CHAINcoord: 141..236
IPR009050Globin-like superfamilySUPERFAMILY46458Globin-likecoord: 141..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4294325..4295128 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12344.t1Gvermi12344.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4294325..4295128 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12344.t1 ID=Gvermi12344.t1|Name=Gvermi12344.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MHILEVQSVKHTATPISQRCVSIPQHTMVPPLVIAFTPSISLQLRCPPPL
QYIPNNRAVCLVRSVASNTRVPRPAPPVAAQPITPRAKQLIELQSQNPVF
DPHLLNEPLGPIFSQLQAQSPPAFVRSWHVADTASVACCIAIDTIAEDAD
QAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVIC
ETGLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKAS
RVVRAAFDQLLVYLSAF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038719Phycobilisome_asu/bsu_sf
IPR012128Phycobilisome_asu/bsu
IPR009050Globin-like_sf