Gvermi12416.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12416.t1
Unique NameGvermi12416.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length271
Homology
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BLAST of Gvermi12416.t1 vs. uniprot
Match: A0A2V3IIW7_9FLOR (Protein unc-45-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW7_9FLOR)

HSP 1 Score: 281 bits (719), Expect = 8.250e-92
Identity = 151/259 (58.30%), Postives = 192/259 (74.13%), Query Frame = 0 
Query:   13 PLEVAGPDPTLDYAISKSSVKPGATVTSEGDVVSVSLEYPNMQPTMF-SFIIGEKQAKPWVQELATGIAINTTATLLHNRNRICSLTVTKITKSHCLAPEELQTRADELRKQGNDAFRAADKFKDYKSAVLLYAKALHASRAAGDPVCTARVRSNLAMCHLRMTNHWVNVIADCDALESPDAKAFYRRSQAEIELDNMVRAIRDLRRAKSLVPGDALVEREASRIEKETIEVMNKRRENFAETYSVMPQSPIFKQPVID 270
            PL V GPD  L Y + K SV     V+S GDVVSV +++ +   ++  SFIIG KQAKPWVQELATG+A+N T+ L H   ++C++TVT IT +  L+ +EL+T+ADE+R++GN AF+AA  FKDY  A+LLY KAL AS  AGD    A+ RSNLAMCHL+    W+NVIAD DAL +PDAKAFYRR+QA IE D++V +IRD+R A SLVP D  V +EA+RIEKE+ EV+ KRR+ FAETYS M QSP+FKQPV+D
Sbjct:   15 PLSVPGPDINLSYTVLKPSVTGDGDVSSRGDVVSVRIQFTDKPKSLIISFIIGRKQAKPWVQELATGLAVNATSILKHQDKQVCTVTVTAITPTPHLSADELRTKADEVRQEGNAAFKAAVTFKDYTKAILLYYKALDASLNAGDNERAAKARSNLAMCHLKR-QEWINVIADVDALPNPDAKAFYRRAQARIEFDDVVGSIRDMRVAASLVPDDKFVVQEAARIEKESTEVLLKRRQQFAETYSNMLQSPVFKQPVMD 272
The following BLAST results are available for this feature:
BLAST of Gvermi12416.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IIW7_9FLOR8.250e-9258.30Protein unc-45-like n=1 Tax=Gracilariopsis chorda ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 199..219
NoneNo IPR availablePANTHERPTHR46423RNA POLYMERASE II-ASSOCIATED PROTEIN 3coord: 115..251
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 105..253
e-value: 5.1E-19
score: 70.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 123..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4649443..4650255 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12416.t1Gvermi12416.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4649443..4650255 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12416.t1 ID=Gvermi12416.t1|Name=Gvermi12416.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=271bp
MGDTSEPFQESFPLEVAGPDPTLDYAISKSSVKPGATVTSEGDVVSVSLE
YPNMQPTMFSFIIGEKQAKPWVQELATGIAINTTATLLHNRNRICSLTVT
KITKSHCLAPEELQTRADELRKQGNDAFRAADKFKDYKSAVLLYAKALHA
SRAAGDPVCTARVRSNLAMCHLRMTNHWVNVIADCDALESPDAKAFYRRS
QAEIELDNMVRAIRDLRRAKSLVPGDALVEREASRIEKETIEVMNKRREN
FAETYSVMPQSPIFKQPVID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf