Gvermi12416.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12416.t1
Unique NameGvermi12416.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4649443..4650255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7244.FBpp0234633
Preferred nameRPAP3
PFAMsRPAP3_C,TPR_1,TPR_11,TPR_2,TPR_7,TPR_8
Max annot lvl33208|Metazoa
KEGG rclassRC00045
KEGG koko:K00237
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0010941,GO:0030544,GO:0031072,GO:0032991,GO:0042752,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043523,GO:0043524,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050795,GO:0051879,GO:0060548,GO:0065007,GO:0097255,GO:1901214,GO:1901215,GO:1904059,GO:2000671,GO:2000672
Evalue2.18e-05
EggNOG OGsCOG0457@1|root,KOG4648@2759|Eukaryota,38GIQ@33154|Opisthokonta,3BEKH@33208|Metazoa,3CVSY@33213|Bilateria,41Z3X@6656|Arthropoda,3SKYY@50557|Insecta,44X75@7147|Diptera,45TKV@7214|Drosophilidae
DescriptionPotential Monad-binding region of RPAP3
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12416Gvermi12416Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4649443..4650255 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12416.t1.stop1Gvermi12416.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4649443..4649445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12416.t1.CDS1Gvermi12416.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4649443..4650255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12416.t1.exon1Gvermi12416.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4649443..4650255 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12416.t1.start1Gvermi12416.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4650253..4650255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12416.t1Gvermi12416.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4649443..4650255 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12416.t1 ID=Gvermi12416.t1|Name=Gvermi12416.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=271bp
MGDTSEPFQESFPLEVAGPDPTLDYAISKSSVKPGATVTSEGDVVSVSLE
YPNMQPTMFSFIIGEKQAKPWVQELATGIAINTTATLLHNRNRICSLTVT
KITKSHCLAPEELQTRADELRKQGNDAFRAADKFKDYKSAVLLYAKALHA
SRAAGDPVCTARVRSNLAMCHLRMTNHWVNVIADCDALESPDAKAFYRRS
QAEIELDNMVRAIRDLRRAKSLVPGDALVEREASRIEKETIEVMNKRREN
FAETYSVMPQSPIFKQPVID*
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spliced messenger RNA

>Gvermi12416.t1 ID=Gvermi12416.t1|Name=Gvermi12416.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_3404:4649443..4650255- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGACACATCAGAACCTTTTCAAGAATCGTTTCCTCTCGAGGTAGC
AGGACCGGACCCGACATTGGATTATGCAATCAGCAAATCATCCGTAAAAC
CAGGGGCAACTGTCACCAGTGAGGGCGATGTTGTCTCAGTATCGCTGGAA
TACCCAAACATGCAACCCACGATGTTTTCTTTCATTATCGGTGAAAAGCA
GGCAAAACCTTGGGTTCAAGAGCTTGCCACGGGCATCGCGATCAATACCA
CTGCAACGTTATTGCACAACCGCAATCGAATATGCTCACTCACCGTGACA
AAGATCACAAAATCCCATTGCCTTGCTCCAGAGGAGTTACAAACTCGTGC
GGACGAGTTACGCAAACAAGGAAATGATGCGTTTAGAGCAGCAGACAAGT
TCAAGGACTACAAGAGTGCTGTTCTCCTCTATGCAAAGGCTCTACATGCC
AGCAGGGCTGCGGGCGACCCCGTGTGCACTGCGAGGGTGCGGTCCAATCT
CGCGATGTGTCACCTTAGGATGACGAATCATTGGGTGAATGTCATTGCAG
ATTGTGATGCGTTGGAAAGTCCGGACGCCAAAGCTTTTTATCGTCGTTCA
CAAGCTGAAATCGAGTTGGATAACATGGTAAGAGCAATTCGCGATCTGCG
GAGAGCCAAAAGTTTGGTGCCCGGTGATGCGCTTGTCGAAAGAGAAGCCT
CTCGCATTGAAAAGGAGACCATTGAAGTGATGAACAAGCGACGTGAAAAC
TTTGCAGAGACATACAGCGTAATGCCGCAGAGCCCAATCTTCAAACAGCC
AGTCATAGATTAA
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protein sequence of Gvermi12416.t1

>Gvermi12416.t1 ID=Gvermi12416.t1|Name=Gvermi12416.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=271bp
MGDTSEPFQESFPLEVAGPDPTLDYAISKSSVKPGATVTSEGDVVSVSLE
YPNMQPTMFSFIIGEKQAKPWVQELATGIAINTTATLLHNRNRICSLTVT
KITKSHCLAPEELQTRADELRKQGNDAFRAADKFKDYKSAVLLYAKALHA
SRAAGDPVCTARVRSNLAMCHLRMTNHWVNVIADCDALESPDAKAFYRRS
QAEIELDNMVRAIRDLRRAKSLVPGDALVEREASRIEKETIEVMNKRREN
FAETYSVMPQSPIFKQPVID*
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mRNA from alignment at ScGOVlb_3404:4649443..4650255-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12416.t1 ID=Gvermi12416.t1|Name=Gvermi12416.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_3404:4649443..4650255- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGACACATCAGAACCTTTTCAAGAATCGTTTCCTCTCGAGGTAGC
AGGACCGGACCCGACATTGGATTATGCAATCAGCAAATCATCCGTAAAAC
CAGGGGCAACTGTCACCAGTGAGGGCGATGTTGTCTCAGTATCGCTGGAA
TACCCAAACATGCAACCCACGATGTTTTCTTTCATTATCGGTGAAAAGCA
GGCAAAACCTTGGGTTCAAGAGCTTGCCACGGGCATCGCGATCAATACCA
CTGCAACGTTATTGCACAACCGCAATCGAATATGCTCACTCACCGTGACA
AAGATCACAAAATCCCATTGCCTTGCTCCAGAGGAGTTACAAACTCGTGC
GGACGAGTTACGCAAACAAGGAAATGATGCGTTTAGAGCAGCAGACAAGT
TCAAGGACTACAAGAGTGCTGTTCTCCTCTATGCAAAGGCTCTACATGCC
AGCAGGGCTGCGGGCGACCCCGTGTGCACTGCGAGGGTGCGGTCCAATCT
CGCGATGTGTCACCTTAGGATGACGAATCATTGGGTGAATGTCATTGCAG
ATTGTGATGCGTTGGAAAGTCCGGACGCCAAAGCTTTTTATCGTCGTTCA
CAAGCTGAAATCGAGTTGGATAACATGGTAAGAGCAATTCGCGATCTGCG
GAGAGCCAAAAGTTTGGTGCCCGGTGATGCGCTTGTCGAAAGAGAAGCCT
CTCGCATTGAAAAGGAGACCATTGAAGTGATGAACAAGCGACGTGAAAAC
TTTGCAGAGACATACAGCGTAATGCCGCAGAGCCCAATCTTCAAACAGCC
AGTCATAGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4649443..4650255-

>Gvermi12416.t1 ID=Gvermi12416.t1|Name=Gvermi12416.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=813bp|location=Sequence derived from alignment at ScGOVlb_3404:4649443..4650255- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGACACATCAGAACCTTTTCAAGAATCGTTTCCTCTCGAGGTAGC
AGGACCGGACCCGACATTGGATTATGCAATCAGCAAATCATCCGTAAAAC
CAGGGGCAACTGTCACCAGTGAGGGCGATGTTGTCTCAGTATCGCTGGAA
TACCCAAACATGCAACCCACGATGTTTTCTTTCATTATCGGTGAAAAGCA
GGCAAAACCTTGGGTTCAAGAGCTTGCCACGGGCATCGCGATCAATACCA
CTGCAACGTTATTGCACAACCGCAATCGAATATGCTCACTCACCGTGACA
AAGATCACAAAATCCCATTGCCTTGCTCCAGAGGAGTTACAAACTCGTGC
GGACGAGTTACGCAAACAAGGAAATGATGCGTTTAGAGCAGCAGACAAGT
TCAAGGACTACAAGAGTGCTGTTCTCCTCTATGCAAAGGCTCTACATGCC
AGCAGGGCTGCGGGCGACCCCGTGTGCACTGCGAGGGTGCGGTCCAATCT
CGCGATGTGTCACCTTAGGATGACGAATCATTGGGTGAATGTCATTGCAG
ATTGTGATGCGTTGGAAAGTCCGGACGCCAAAGCTTTTTATCGTCGTTCA
CAAGCTGAAATCGAGTTGGATAACATGGTAAGAGCAATTCGCGATCTGCG
GAGAGCCAAAAGTTTGGTGCCCGGTGATGCGCTTGTCGAAAGAGAAGCCT
CTCGCATTGAAAAGGAGACCATTGAAGTGATGAACAAGCGACGTGAAAAC
TTTGCAGAGACATACAGCGTAATGCCGCAGAGCCCAATCTTCAAACAGCC
AGTCATAGATTAA
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