Gvermi12098.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12098.t1
Unique NameGvermi12098.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length606
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3351827..3354084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog543632.JOJL01000059_gene9775
PFAMsAPH
Max annot lvl201174|Actinobacteria
Evalue2.79e-12
EggNOG OGsCOG3178@1|root,COG3178@2|Bacteria,2GNRB@201174|Actinobacteria,4DD76@85008|Micromonosporales
Description'Phosphotransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12098Gvermi12098Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3351827..3354084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12098.t1Gvermi12098.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3351827..3354084 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12098.t1.start1Gvermi12098.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3351827..3351829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12098.t1.CDS1Gvermi12098.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3351827..3353295 +
Gvermi12098.t1.CDS2Gvermi12098.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3353351..3353424 +
Gvermi12098.t1.CDS3Gvermi12098.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3353582..3353644 +
Gvermi12098.t1.CDS4Gvermi12098.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3353718..3353790 +
Gvermi12098.t1.CDS5Gvermi12098.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3353946..3354084 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12098.t1.exon1Gvermi12098.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3351827..3353295 +
Gvermi12098.t1.exon2Gvermi12098.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3353351..3353424 +
Gvermi12098.t1.exon3Gvermi12098.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3353582..3353644 +
Gvermi12098.t1.exon4Gvermi12098.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3353718..3353790 +
Gvermi12098.t1.exon5Gvermi12098.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3353946..3354084 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12098.t1.intron1Gvermi12098.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3353296..3353350 +
Gvermi12098.t1.intron2Gvermi12098.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3353425..3353581 +
Gvermi12098.t1.intron3Gvermi12098.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3353645..3353717 +
Gvermi12098.t1.intron4Gvermi12098.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3353791..3353945 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12098.t1.stop1Gvermi12098.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3354082..3354084 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12098.t1 ID=Gvermi12098.t1|Name=Gvermi12098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp
MDSLVQADCTILKRNAWSWSACIANDSQELQALVVSFRCKQVLLKKEADT
WVLPGCLYSRANFASVFEPEAIIPQVQDLIGKDLPLIFLRQLWRRVRPVI
IEHCRLECEKVVVLLALEDETLTSEGVGDALADDFRCATSGGKFRWISAA
EAKVSHLIHEAATAIEEELKYVATDFQPHNRVSWQRPGWFEVAKSWMIEQ
LSTRCNASLTDDIIQLRSSHLGIILEAETTTGSFFLKCTSAVANDASFTR
TLASLSPSLVKAPVAVEAERQLLLTADYGAILNPWNLCPEEKRRLTSNYA
HLQMDTIGNEVELISAGFPDMRVNKLLDYVDELDACSMFHSLSSFDKRSE
TDVSFFRNNKQTIKTELSKLNCSPKLEATITHNDLFSSNVYWNEDLGNYM
FFDFVESYVSHPFAFQIGVLDEKHYLEEWSARTGAKIPELEKLLSPGYKC
HLLAVLVMRLHEAQRIEFPESERSLEEACCALRLFNGSMRLWVINREIRR
GVPGFDFMIQVDMIYLELPLSRLVEVSSMSSVVFVLIPAISQLTKTSPAP
TAETRVSHDNATRIPSTCSYLPYTDGSMAKYYSSKQGLRSNEPSLVLGVT
GLALL*
back to top

spliced messenger RNA

>Gvermi12098.t1 ID=Gvermi12098.t1|Name=Gvermi12098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at ScGOVlb_3404:3351827..3354084+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCCTTGTACAAGCTGATTGTACCATACTAAAGCGTAATGCATG
GTCGTGGTCTGCTTGCATTGCGAACGATTCTCAGGAGCTTCAGGCCCTAG
TCGTATCCTTCAGATGCAAGCAAGTTCTGCTCAAAAAAGAGGCAGATACC
TGGGTGCTTCCTGGCTGTCTCTACTCTCGCGCCAATTTTGCGTCTGTGTT
TGAACCAGAAGCCATCATACCACAAGTACAAGATTTGATTGGCAAAGACT
TGCCACTTATTTTCCTGCGTCAGCTGTGGAGGAGAGTTAGACCTGTAATT
ATCGAACACTGCAGGCTAGAATGCGAAAAGGTTGTGGTGCTGCTGGCACT
CGAAGATGAAACTCTTACAAGTGAAGGCGTTGGCGATGCCCTCGCAGACG
ACTTCCGCTGCGCCACAAGTGGAGGTAAGTTTCGTTGGATTTCAGCAGCA
GAAGCGAAAGTGTCTCATTTGATACATGAAGCAGCCACTGCAATTGAAGA
AGAACTCAAATACGTTGCAACGGACTTTCAACCACACAATCGCGTTTCAT
GGCAGCGTCCGGGATGGTTTGAAGTGGCCAAATCGTGGATGATCGAGCAA
CTCTCAACGAGGTGTAACGCTTCTCTAACCGACGACATCATTCAACTGCG
ATCCTCACACCTTGGGATCATTTTAGAAGCAGAAACCACTACAGGGAGCT
TCTTTCTAAAATGTACCAGTGCCGTTGCAAACGATGCCTCTTTCACTCGA
ACGCTTGCCTCTCTGTCGCCATCGCTCGTAAAAGCTCCAGTAGCCGTGGA
AGCGGAGAGACAACTCCTGTTAACAGCCGATTATGGAGCCATTTTAAACC
CATGGAACCTATGCCCTGAAGAAAAGCGGCGTCTTACTTCGAACTATGCC
CACTTACAAATGGATACAATTGGAAATGAGGTAGAACTCATTAGCGCTGG
ATTCCCTGACATGAGAGTGAACAAACTACTTGATTATGTAGATGAATTAG
ATGCTTGTTCGATGTTTCATTCGTTGAGCAGTTTTGACAAAAGATCTGAA
ACAGATGTGTCGTTCTTTCGAAACAACAAGCAAACGATCAAGACAGAGTT
GTCAAAGCTCAATTGTTCGCCGAAATTAGAAGCAACCATAACGCACAACG
ACCTCTTCAGTTCAAATGTTTACTGGAATGAAGATCTAGGGAATTACATG
TTCTTTGATTTTGTGGAGAGTTACGTGAGTCATCCCTTTGCGTTTCAAAT
TGGAGTCTTGGACGAAAAGCATTATTTGGAAGAATGGAGTGCCAGGACTG
GCGCAAAGATTCCAGAGCTCGAGAAGTTACTATCTCCGGGGTACAAATGT
CATCTTTTAGCCGTGCTCGTGATGCGGCTTCATGAAGCACAGCGTATAGA
GTTTCCAGAATCGGAACGAAGCCTTGAAGAAGCATGCTGCGCTCTTCGCC
TGTTCAACGGTAGCATGCGTTTGTGGGTTATTAATCGTGAAATACGGCGT
GGGGTCCCTGGTTTCGATTTTATGATCCAGGTGGACATGATCTACCTTGA
GCTGCCTTTGTCACGTTTGGTAGAAGTGTCGTCCATGTCTTCGGTTGTCT
TCGTTCTCATTCCGGCAATATCTCAGCTTACAAAGACTTCTCCAGCTCCA
ACTGCAGAGACTCGAGTTTCACATGACAATGCCACAAGAATTCCGTCAAC
GTGTTCGTATTTGCCGTACACCGATGGTTCAATGGCAAAATATTATTCTA
GCAAACAAGGTTTAAGATCCAATGAACCCAGTTTGGTACTTGGTGTAACC
GGGTTAGCATTACTTTGA
back to top

protein sequence of Gvermi12098.t1

>Gvermi12098.t1 ID=Gvermi12098.t1|Name=Gvermi12098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=606bp
MDSLVQADCTILKRNAWSWSACIANDSQELQALVVSFRCKQVLLKKEADT
WVLPGCLYSRANFASVFEPEAIIPQVQDLIGKDLPLIFLRQLWRRVRPVI
IEHCRLECEKVVVLLALEDETLTSEGVGDALADDFRCATSGGKFRWISAA
EAKVSHLIHEAATAIEEELKYVATDFQPHNRVSWQRPGWFEVAKSWMIEQ
LSTRCNASLTDDIIQLRSSHLGIILEAETTTGSFFLKCTSAVANDASFTR
TLASLSPSLVKAPVAVEAERQLLLTADYGAILNPWNLCPEEKRRLTSNYA
HLQMDTIGNEVELISAGFPDMRVNKLLDYVDELDACSMFHSLSSFDKRSE
TDVSFFRNNKQTIKTELSKLNCSPKLEATITHNDLFSSNVYWNEDLGNYM
FFDFVESYVSHPFAFQIGVLDEKHYLEEWSARTGAKIPELEKLLSPGYKC
HLLAVLVMRLHEAQRIEFPESERSLEEACCALRLFNGSMRLWVINREIRR
GVPGFDFMIQVDMIYLELPLSRLVEVSSMSSVVFVLIPAISQLTKTSPAP
TAETRVSHDNATRIPSTCSYLPYTDGSMAKYYSSKQGLRSNEPSLVLGVT
GLALL*
back to top

mRNA from alignment at ScGOVlb_3404:3351827..3354084+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12098.t1 ID=Gvermi12098.t1|Name=Gvermi12098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2258bp|location=Sequence derived from alignment at ScGOVlb_3404:3351827..3354084+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAGCCTTGTACAAGCTGATTGTACCATACTAAAGCGTAATGCATG
GTCGTGGTCTGCTTGCATTGCGAACGATTCTCAGGAGCTTCAGGCCCTAG
TCGTATCCTTCAGATGCAAGCAAGTTCTGCTCAAAAAAGAGGCAGATACC
TGGGTGCTTCCTGGCTGTCTCTACTCTCGCGCCAATTTTGCGTCTGTGTT
TGAACCAGAAGCCATCATACCACAAGTACAAGATTTGATTGGCAAAGACT
TGCCACTTATTTTCCTGCGTCAGCTGTGGAGGAGAGTTAGACCTGTAATT
ATCGAACACTGCAGGCTAGAATGCGAAAAGGTTGTGGTGCTGCTGGCACT
CGAAGATGAAACTCTTACAAGTGAAGGCGTTGGCGATGCCCTCGCAGACG
ACTTCCGCTGCGCCACAAGTGGAGGTAAGTTTCGTTGGATTTCAGCAGCA
GAAGCGAAAGTGTCTCATTTGATACATGAAGCAGCCACTGCAATTGAAGA
AGAACTCAAATACGTTGCAACGGACTTTCAACCACACAATCGCGTTTCAT
GGCAGCGTCCGGGATGGTTTGAAGTGGCCAAATCGTGGATGATCGAGCAA
CTCTCAACGAGGTGTAACGCTTCTCTAACCGACGACATCATTCAACTGCG
ATCCTCACACCTTGGGATCATTTTAGAAGCAGAAACCACTACAGGGAGCT
TCTTTCTAAAATGTACCAGTGCCGTTGCAAACGATGCCTCTTTCACTCGA
ACGCTTGCCTCTCTGTCGCCATCGCTCGTAAAAGCTCCAGTAGCCGTGGA
AGCGGAGAGACAACTCCTGTTAACAGCCGATTATGGAGCCATTTTAAACC
CATGGAACCTATGCCCTGAAGAAAAGCGGCGTCTTACTTCGAACTATGCC
CACTTACAAATGGATACAATTGGAAATGAGGTAGAACTCATTAGCGCTGG
ATTCCCTGACATGAGAGTGAACAAACTACTTGATTATGTAGATGAATTAG
ATGCTTGTTCGATGTTTCATTCGTTGAGCAGTTTTGACAAAAGATCTGAA
ACAGATGTGTCGTTCTTTCGAAACAACAAGCAAACGATCAAGACAGAGTT
GTCAAAGCTCAATTGTTCGCCGAAATTAGAAGCAACCATAACGCACAACG
ACCTCTTCAGTTCAAATGTTTACTGGAATGAAGATCTAGGGAATTACATG
TTCTTTGATTTTGTGGAGAGTTACGTGAGTCATCCCTTTGCGTTTCAAAT
TGGAGTCTTGGACGAAAAGCATTATTTGGAAGAATGGAGTGCCAGGACTG
GCGCAAAGATTCCAGAGCTCGAGAAGTTACTATCTCCGGGGTACAAATGT
CATCTTTTAGCCGTGCTCGTGATGCGGCTTCATGAAGCACAGCGTATAGA
GTTTCCAGAATCGGAACGAAGCCTTGAAGAAGCATGCTGCGCTCTTCGCC
TGTTCAACGGTAGCATGCGGTGTACTTAACAAGTAGTCGGAAGACTTCAG
GCTGAAGCATTCAACTATTGCTAGTTTGTGGGTTATTAATCGTGAAATAC
GGCGTGGGGTCCCTGGTTTCGATTTTATGATCCAGGTGGACATGATCTGT
AAGTTTCATGGCTCCACCCCTTGTGAGCGGTTCCGGCATCGGAAAAGAAC
ATTTGCAGATATTGCACCTGTATACTGAGCTTTTTGTAGCACCCAAAACG
GAGGAGGAAGCTGACGTTTTTTCCCGCTTTTCTCGTTTCATGCGACGGTG
TGAAGACCTTGAGCTGCCTTTGTCACGTTTGGTAGAAGTGTCGTCCATGT
CTTCGGTTGTCTTCGTTCGTTCTTTGTTTGCGCAGCGAAGTTGCTAGCAA
ATATCTAGATAACACCCGTAATGTTTTCATCCGGACGCAAGTCATTCCGG
CAATATCTCAGCTTACAAAGACTTCTCCAGCTCCAACTGCAGAGACTCGA
GTTTCACATGACAAGTAAGCAGACATCTCTTTCAATCGCGCGGCAGCGGT
TCTGGAGTGACGTGTGCATTTGAAAGACAGCTCAAGATTGGCATCGTCCT
TGCTCACTCAATGGTTTTATTGTACAAATACTTGGCAATTCGATCGTTTT
CTTTGTCTGCCATTGGTAGTGCCACAAGAATTCCGTCAACGTGTTCGTAT
TTGCCGTACACCGATGGTTCAATGGCAAAATATTATTCTAGCAAACAAGG
TTTAAGATCCAATGAACCCAGTTTGGTACTTGGTGTAACCGGGTTAGCAT
TACTTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3351827..3354084+

>Gvermi12098.t1 ID=Gvermi12098.t1|Name=Gvermi12098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1818bp|location=Sequence derived from alignment at ScGOVlb_3404:3351827..3354084+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAGCCTTGTACAAGCTGATTGTACCATACTAAAGCGTAATGCATG
GTCGTGGTCTGCTTGCATTGCGAACGATTCTCAGGAGCTTCAGGCCCTAG
TCGTATCCTTCAGATGCAAGCAAGTTCTGCTCAAAAAAGAGGCAGATACC
TGGGTGCTTCCTGGCTGTCTCTACTCTCGCGCCAATTTTGCGTCTGTGTT
TGAACCAGAAGCCATCATACCACAAGTACAAGATTTGATTGGCAAAGACT
TGCCACTTATTTTCCTGCGTCAGCTGTGGAGGAGAGTTAGACCTGTAATT
ATCGAACACTGCAGGCTAGAATGCGAAAAGGTTGTGGTGCTGCTGGCACT
CGAAGATGAAACTCTTACAAGTGAAGGCGTTGGCGATGCCCTCGCAGACG
ACTTCCGCTGCGCCACAAGTGGAGGTAAGTTTCGTTGGATTTCAGCAGCA
GAAGCGAAAGTGTCTCATTTGATACATGAAGCAGCCACTGCAATTGAAGA
AGAACTCAAATACGTTGCAACGGACTTTCAACCACACAATCGCGTTTCAT
GGCAGCGTCCGGGATGGTTTGAAGTGGCCAAATCGTGGATGATCGAGCAA
CTCTCAACGAGGTGTAACGCTTCTCTAACCGACGACATCATTCAACTGCG
ATCCTCACACCTTGGGATCATTTTAGAAGCAGAAACCACTACAGGGAGCT
TCTTTCTAAAATGTACCAGTGCCGTTGCAAACGATGCCTCTTTCACTCGA
ACGCTTGCCTCTCTGTCGCCATCGCTCGTAAAAGCTCCAGTAGCCGTGGA
AGCGGAGAGACAACTCCTGTTAACAGCCGATTATGGAGCCATTTTAAACC
CATGGAACCTATGCCCTGAAGAAAAGCGGCGTCTTACTTCGAACTATGCC
CACTTACAAATGGATACAATTGGAAATGAGGTAGAACTCATTAGCGCTGG
ATTCCCTGACATGAGAGTGAACAAACTACTTGATTATGTAGATGAATTAG
ATGCTTGTTCGATGTTTCATTCGTTGAGCAGTTTTGACAAAAGATCTGAA
ACAGATGTGTCGTTCTTTCGAAACAACAAGCAAACGATCAAGACAGAGTT
GTCAAAGCTCAATTGTTCGCCGAAATTAGAAGCAACCATAACGCACAACG
ACCTCTTCAGTTCAAATGTTTACTGGAATGAAGATCTAGGGAATTACATG
TTCTTTGATTTTGTGGAGAGTTACGTGAGTCATCCCTTTGCGTTTCAAAT
TGGAGTCTTGGACGAAAAGCATTATTTGGAAGAATGGAGTGCCAGGACTG
GCGCAAAGATTCCAGAGCTCGAGAAGTTACTATCTCCGGGGTACAAATGT
CATCTTTTAGCCGTGCTCGTGATGCGGCTTCATGAAGCACAGCGTATAGA
GTTTCCAGAATCGGAACGAAGCCTTGAAGAAGCATGCTGCGCTCTTCGCC
TGTTCAACGGTAGCATGCGTTTGTGGGTTATTAATCGTGAAATACGGCGT
GGGGTCCCTGGTTTCGATTTTATGATCCAGGTGGACATGATCTACCTTGA
GCTGCCTTTGTCACGTTTGGTAGAAGTGTCGTCCATGTCTTCGGTTGTCT
TCGTTCTCATTCCGGCAATATCTCAGCTTACAAAGACTTCTCCAGCTCCA
ACTGCAGAGACTCGAGTTTCACATGACAATGCCACAAGAATTCCGTCAAC
GTGTTCGTATTTGCCGTACACCGATGGTTCAATGGCAAAATATTATTCTA
GCAAACAAGGTTTAAGATCCAATGAACCCAGTTTGGTACTTGGTGTAACC
GGGTTAGCATTACTTTGA
back to top