Gvermi12493.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12493.t1
Unique NameGvermi12493.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5437902..5438903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1306406.ASHX01000001_gene4469
PFAMsCHAP,DUF11,PKD,PPC
Max annot lvl2|Bacteria
Evalue1.16e-14
EggNOG OGsCOG3291@1|root,COG3291@2|Bacteria
Descriptionmetallopeptidase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12493Gvermi12493Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5437902..5438903 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12493.t1.stop1Gvermi12493.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5437902..5437904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12493.t1.CDS1Gvermi12493.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5437902..5438903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12493.t1.exon1Gvermi12493.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5437902..5438903 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12493.t1.start1Gvermi12493.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5438901..5438903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12493.t1Gvermi12493.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5437902..5438903 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12493.t1 ID=Gvermi12493.t1|Name=Gvermi12493.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=334bp
MNSIFAALLLLCVILQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDA
LIAIAQLLTSFAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQV
GLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNA
GITIATVGIGNGVDTASLQSIASSPDLFTFVDSFSTFITKVEEIVESLCP
EPECANIDCAKCGQILECYVNSGFPNLDQAVCDVVSDQSQFCTTRGGDGT
ACLQQCKGRFGVACFTEESFGSCPQMIGSDPKCKGGAARNRPADLSNFAS
YTVCVRADGTVEVSCLNDKCESGSSCSCAQPFE*
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spliced messenger RNA

>Gvermi12493.t1 ID=Gvermi12493.t1|Name=Gvermi12493.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_3404:5437902..5438903- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTATATTCGCTGCTCTTCTGCTTCTCTGTGTCATTTTGCAAGA
GGCAGCCACTCAAAACAGCTGTCTCCCGCTCAATGTTTGCTTTGCTATTG
ATGAGAGTGGCTCAATCGACTCGACCGAGTTCGATCAGCAAACAGATGCT
CTTATTGCAATCGCTCAACTTCTCACAAGCTTTGCACCCGGCTCCACTTT
GTCAGCTGTCGGGTTTTCAAACACTGCAGAAGTCGTGCAATCACCAACTA
CCGATATTAATGCAGTCTTCATCCCAGCAATTCAAAACAACCCACAGGTA
GGATTGAGCACCTCTTCAGGCTCCGGTCTTGCACTCTGTGAGAGTTTAAT
TGGTTCAGCTGCTGATCCTCGCATAATCTTGCTTCTCACTGACGGTCAAG
ACAACCAAGCGCCGTCAGGAACCTCCGTCGCGCCAGCAATCAAGAACGCT
GGAATAACGATCGCCACAGTTGGTATTGGTAATGGCGTAGATACCGCAAG
TCTTCAGAGCATCGCCAGCAGTCCAGACCTCTTCACATTTGTCGATAGTT
TTAGTACATTCATCACAAAAGTGGAGGAAATTGTCGAAAGCCTTTGCCCA
GAACCTGAATGTGCAAACATCGACTGCGCAAAATGTGGCCAGATTCTCGA
GTGTTATGTGAACTCTGGTTTCCCCAACCTCGATCAAGCAGTCTGTGATG
TCGTGAGCGACCAGTCACAATTCTGCACGACTCGAGGAGGAGATGGAACA
GCCTGTTTGCAACAGTGCAAGGGCCGGTTTGGAGTTGCATGTTTCACAGA
AGAGTCTTTTGGTTCCTGTCCGCAGATGATCGGTAGCGATCCAAAATGTA
AGGGAGGAGCGGCTAGAAATCGCCCAGCCGATTTGAGTAACTTCGCATCA
TATACGGTATGCGTTCGTGCTGATGGTACTGTGGAAGTGAGCTGTCTCAA
CGACAAGTGTGAGTCTGGTTCGTCGTGCTCTTGTGCTCAACCGTTTGAGT
AA
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protein sequence of Gvermi12493.t1

>Gvermi12493.t1 ID=Gvermi12493.t1|Name=Gvermi12493.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=334bp
MNSIFAALLLLCVILQEAATQNSCLPLNVCFAIDESGSIDSTEFDQQTDA
LIAIAQLLTSFAPGSTLSAVGFSNTAEVVQSPTTDINAVFIPAIQNNPQV
GLSTSSGSGLALCESLIGSAADPRIILLLTDGQDNQAPSGTSVAPAIKNA
GITIATVGIGNGVDTASLQSIASSPDLFTFVDSFSTFITKVEEIVESLCP
EPECANIDCAKCGQILECYVNSGFPNLDQAVCDVVSDQSQFCTTRGGDGT
ACLQQCKGRFGVACFTEESFGSCPQMIGSDPKCKGGAARNRPADLSNFAS
YTVCVRADGTVEVSCLNDKCESGSSCSCAQPFE*
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mRNA from alignment at ScGOVlb_3404:5437902..5438903-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12493.t1 ID=Gvermi12493.t1|Name=Gvermi12493.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_3404:5437902..5438903- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCTATATTCGCTGCTCTTCTGCTTCTCTGTGTCATTTTGCAAGA
GGCAGCCACTCAAAACAGCTGTCTCCCGCTCAATGTTTGCTTTGCTATTG
ATGAGAGTGGCTCAATCGACTCGACCGAGTTCGATCAGCAAACAGATGCT
CTTATTGCAATCGCTCAACTTCTCACAAGCTTTGCACCCGGCTCCACTTT
GTCAGCTGTCGGGTTTTCAAACACTGCAGAAGTCGTGCAATCACCAACTA
CCGATATTAATGCAGTCTTCATCCCAGCAATTCAAAACAACCCACAGGTA
GGATTGAGCACCTCTTCAGGCTCCGGTCTTGCACTCTGTGAGAGTTTAAT
TGGTTCAGCTGCTGATCCTCGCATAATCTTGCTTCTCACTGACGGTCAAG
ACAACCAAGCGCCGTCAGGAACCTCCGTCGCGCCAGCAATCAAGAACGCT
GGAATAACGATCGCCACAGTTGGTATTGGTAATGGCGTAGATACCGCAAG
TCTTCAGAGCATCGCCAGCAGTCCAGACCTCTTCACATTTGTCGATAGTT
TTAGTACATTCATCACAAAAGTGGAGGAAATTGTCGAAAGCCTTTGCCCA
GAACCTGAATGTGCAAACATCGACTGCGCAAAATGTGGCCAGATTCTCGA
GTGTTATGTGAACTCTGGTTTCCCCAACCTCGATCAAGCAGTCTGTGATG
TCGTGAGCGACCAGTCACAATTCTGCACGACTCGAGGAGGAGATGGAACA
GCCTGTTTGCAACAGTGCAAGGGCCGGTTTGGAGTTGCATGTTTCACAGA
AGAGTCTTTTGGTTCCTGTCCGCAGATGATCGGTAGCGATCCAAAATGTA
AGGGAGGAGCGGCTAGAAATCGCCCAGCCGATTTGAGTAACTTCGCATCA
TATACGGTATGCGTTCGTGCTGATGGTACTGTGGAAGTGAGCTGTCTCAA
CGACAAGTGTGAGTCTGGTTCGTCGTGCTCTTGTGCTCAACCGTTTGAGT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5437902..5438903-

>Gvermi12493.t1 ID=Gvermi12493.t1|Name=Gvermi12493.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1002bp|location=Sequence derived from alignment at ScGOVlb_3404:5437902..5438903- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCTATATTCGCTGCTCTTCTGCTTCTCTGTGTCATTTTGCAAGA
GGCAGCCACTCAAAACAGCTGTCTCCCGCTCAATGTTTGCTTTGCTATTG
ATGAGAGTGGCTCAATCGACTCGACCGAGTTCGATCAGCAAACAGATGCT
CTTATTGCAATCGCTCAACTTCTCACAAGCTTTGCACCCGGCTCCACTTT
GTCAGCTGTCGGGTTTTCAAACACTGCAGAAGTCGTGCAATCACCAACTA
CCGATATTAATGCAGTCTTCATCCCAGCAATTCAAAACAACCCACAGGTA
GGATTGAGCACCTCTTCAGGCTCCGGTCTTGCACTCTGTGAGAGTTTAAT
TGGTTCAGCTGCTGATCCTCGCATAATCTTGCTTCTCACTGACGGTCAAG
ACAACCAAGCGCCGTCAGGAACCTCCGTCGCGCCAGCAATCAAGAACGCT
GGAATAACGATCGCCACAGTTGGTATTGGTAATGGCGTAGATACCGCAAG
TCTTCAGAGCATCGCCAGCAGTCCAGACCTCTTCACATTTGTCGATAGTT
TTAGTACATTCATCACAAAAGTGGAGGAAATTGTCGAAAGCCTTTGCCCA
GAACCTGAATGTGCAAACATCGACTGCGCAAAATGTGGCCAGATTCTCGA
GTGTTATGTGAACTCTGGTTTCCCCAACCTCGATCAAGCAGTCTGTGATG
TCGTGAGCGACCAGTCACAATTCTGCACGACTCGAGGAGGAGATGGAACA
GCCTGTTTGCAACAGTGCAAGGGCCGGTTTGGAGTTGCATGTTTCACAGA
AGAGTCTTTTGGTTCCTGTCCGCAGATGATCGGTAGCGATCCAAAATGTA
AGGGAGGAGCGGCTAGAAATCGCCCAGCCGATTTGAGTAACTTCGCATCA
TATACGGTATGCGTTCGTGCTGATGGTACTGTGGAAGTGAGCTGTCTCAA
CGACAAGTGTGAGTCTGGTTCGTCGTGCTCTTGTGCTCAACCGTTTGAGT
AA
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