Gvermi12414.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12414.t1
Unique NameGvermi12414.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length596
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4643225..4645012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706962.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08959
KEGG Pathwayko04340,ko04390,ko04540,ko04710,map04340,map04390,map04540,map04710
Evalue3.17e-216
EggNOG OGsKOG1164@1|root,KOG1164@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12414Gvermi12414Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4643225..4645012 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12414.t1.stop1Gvermi12414.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4643225..4643227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12414.t1.CDS1Gvermi12414.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4643225..4645012 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12414.t1.exon1Gvermi12414.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4643225..4645012 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12414.t1.start1Gvermi12414.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4645010..4645012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12414.t1Gvermi12414.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4643225..4645012 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12414.t1 ID=Gvermi12414.t1|Name=Gvermi12414.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=596bp
MGDESRKDPVPVQVGEGSRRYIVLKHAHLGSGHFGDVYMGEHIHSSRKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVYYTGHHGRYYVMVMDLLGPTL
QRLLESRPPRGLSWETVSVIGYKCVQLLRKLHTKGYVHGDVKPENFLCAY
SEDNVIDPSRGLFMVDLGLASRWRDLSKPGGHIPYGQRVDHFSGTVRYAS
VNAHLGRWLSRRDDLESLGYMLLYLFHGSLPWQGYSGEDKNMQVCETKGR
MTVEAMCRGAPEVLQYFLAYVRQMKFEEAPDYDYLMLLCDSSRGLKEVKK
LLMAQEREEYYENIQPVVGSKRKQRDPDDIGAPLVKKHKVVLPKRIKTHQ
WIIVSTSARTNLSPQTQCYTSHTSYSNLVTEVERKWGLLMRITSLNFAGG
MWTAVLNSRNSGYMEQALHYCHDAEFPREWVRQKWEQAYFITSVAGNENC
WGVVCSTMQRGRKYKQQSYIVSSTFPSKWIADKWNADFHITSIATQGRYQ
MQWCVVMSRGAPYKDQCVELDFQYPSHSIHARWDENYMITAVACTQEQCA
FVMSRGACYGEEQRCTRTSHGPLHKIREDWNDSLYVTCLSYGRVS*
back to top

spliced messenger RNA

>Gvermi12414.t1 ID=Gvermi12414.t1|Name=Gvermi12414.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at ScGOVlb_3404:4643225..4645012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACGAGTCGCGCAAGGACCCCGTCCCCGTCCAGGTCGGCGAGGG
CTCTCGCCGCTACATCGTTCTCAAGCATGCTCACCTGGGATCCGGTCACT
TTGGAGACGTCTACATGGGTGAGCACATCCACAGCAGTCGCAAGGTCGCC
ATTAAACTCGAACATCGGTCCGGCTCCATCGCACGCCGCGAATGGGAGGT
CATGCGCTACATGAACGGCGACGGCGCCCCTCGCGTGTACTACACCGGCC
ACCATGGTCGCTACTACGTCATGGTCATGGATCTTCTCGGCCCCACGTTG
CAGCGCCTCTTGGAGAGCCGCCCGCCGCGCGGTCTGTCCTGGGAAACCGT
CTCCGTCATTGGCTACAAGTGTGTTCAGCTGCTGCGCAAGCTGCACACCA
AGGGCTACGTCCACGGCGACGTCAAGCCCGAGAACTTTCTGTGCGCTTAC
TCGGAGGACAATGTCATTGACCCTAGCCGCGGCCTCTTCATGGTCGACCT
GGGGCTCGCCTCCCGGTGGAGAGACCTGTCCAAGCCAGGCGGCCACATCC
CGTACGGCCAGCGAGTAGATCACTTCTCGGGCACCGTGCGCTACGCCTCG
GTCAATGCCCACCTCGGTCGCTGGCTTTCGCGACGTGATGACCTCGAAAG
TCTGGGCTACATGCTTCTGTATCTCTTCCACGGTTCGCTTCCCTGGCAGG
GCTACTCTGGCGAAGACAAGAACATGCAGGTCTGTGAGACCAAAGGTCGC
ATGACAGTCGAAGCCATGTGCCGCGGTGCCCCGGAGGTGCTTCAATACTT
TTTAGCGTATGTTCGCCAAATGAAGTTTGAGGAAGCTCCGGATTATGACT
ACCTCATGTTGCTGTGTGATAGCAGTCGGGGGCTCAAGGAAGTCAAGAAG
CTCTTGATGGCCCAGGAGAGGGAAGAATATTATGAAAACATTCAGCCCGT
CGTGGGGTCCAAGAGGAAACAGCGCGATCCGGACGACATTGGAGCCCCAC
TTGTCAAGAAACACAAAGTTGTTCTCCCGAAACGAATCAAGACACATCAA
TGGATTATAGTTTCCACCAGTGCCCGAACAAATCTATCCCCACAGACCCA
GTGCTACACTTCACACACTTCCTACTCAAATTTGGTCACAGAGGTGGAGA
GAAAGTGGGGACTACTGATGCGGATAACCAGCCTCAACTTTGCTGGTGGT
ATGTGGACCGCTGTGCTCAATTCTCGCAACTCGGGCTACATGGAGCAGGC
CCTACACTACTGCCATGACGCGGAGTTTCCCCGCGAGTGGGTGCGTCAGA
AGTGGGAGCAAGCTTATTTCATCACATCCGTTGCTGGAAATGAAAATTGT
TGGGGTGTCGTGTGCTCCACGATGCAGCGGGGTCGCAAGTACAAGCAGCA
ATCGTATATTGTGTCGTCAACTTTCCCGTCAAAGTGGATTGCAGACAAAT
GGAATGCCGACTTTCACATCACCTCCATTGCCACTCAGGGTCGTTACCAA
ATGCAATGGTGCGTCGTCATGTCGAGAGGTGCACCATACAAAGACCAGTG
TGTCGAGCTAGACTTTCAATACCCCTCCCATTCTATCCATGCACGATGGG
ATGAAAACTACATGATCACCGCTGTTGCATGCACACAAGAGCAGTGTGCG
TTTGTCATGTCAAGAGGAGCATGCTATGGCGAAGAACAGCGGTGCACACG
CACCTCACATGGGCCTCTGCACAAAATACGCGAAGACTGGAATGATTCGC
TGTACGTAACTTGTCTGTCGTATGGACGAGTAAGCTAG
back to top

protein sequence of Gvermi12414.t1

>Gvermi12414.t1 ID=Gvermi12414.t1|Name=Gvermi12414.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=596bp
MGDESRKDPVPVQVGEGSRRYIVLKHAHLGSGHFGDVYMGEHIHSSRKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVYYTGHHGRYYVMVMDLLGPTL
QRLLESRPPRGLSWETVSVIGYKCVQLLRKLHTKGYVHGDVKPENFLCAY
SEDNVIDPSRGLFMVDLGLASRWRDLSKPGGHIPYGQRVDHFSGTVRYAS
VNAHLGRWLSRRDDLESLGYMLLYLFHGSLPWQGYSGEDKNMQVCETKGR
MTVEAMCRGAPEVLQYFLAYVRQMKFEEAPDYDYLMLLCDSSRGLKEVKK
LLMAQEREEYYENIQPVVGSKRKQRDPDDIGAPLVKKHKVVLPKRIKTHQ
WIIVSTSARTNLSPQTQCYTSHTSYSNLVTEVERKWGLLMRITSLNFAGG
MWTAVLNSRNSGYMEQALHYCHDAEFPREWVRQKWEQAYFITSVAGNENC
WGVVCSTMQRGRKYKQQSYIVSSTFPSKWIADKWNADFHITSIATQGRYQ
MQWCVVMSRGAPYKDQCVELDFQYPSHSIHARWDENYMITAVACTQEQCA
FVMSRGACYGEEQRCTRTSHGPLHKIREDWNDSLYVTCLSYGRVS*
back to top

mRNA from alignment at ScGOVlb_3404:4643225..4645012-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12414.t1 ID=Gvermi12414.t1|Name=Gvermi12414.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at ScGOVlb_3404:4643225..4645012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGACGAGTCGCGCAAGGACCCCGTCCCCGTCCAGGTCGGCGAGGG
CTCTCGCCGCTACATCGTTCTCAAGCATGCTCACCTGGGATCCGGTCACT
TTGGAGACGTCTACATGGGTGAGCACATCCACAGCAGTCGCAAGGTCGCC
ATTAAACTCGAACATCGGTCCGGCTCCATCGCACGCCGCGAATGGGAGGT
CATGCGCTACATGAACGGCGACGGCGCCCCTCGCGTGTACTACACCGGCC
ACCATGGTCGCTACTACGTCATGGTCATGGATCTTCTCGGCCCCACGTTG
CAGCGCCTCTTGGAGAGCCGCCCGCCGCGCGGTCTGTCCTGGGAAACCGT
CTCCGTCATTGGCTACAAGTGTGTTCAGCTGCTGCGCAAGCTGCACACCA
AGGGCTACGTCCACGGCGACGTCAAGCCCGAGAACTTTCTGTGCGCTTAC
TCGGAGGACAATGTCATTGACCCTAGCCGCGGCCTCTTCATGGTCGACCT
GGGGCTCGCCTCCCGGTGGAGAGACCTGTCCAAGCCAGGCGGCCACATCC
CGTACGGCCAGCGAGTAGATCACTTCTCGGGCACCGTGCGCTACGCCTCG
GTCAATGCCCACCTCGGTCGCTGGCTTTCGCGACGTGATGACCTCGAAAG
TCTGGGCTACATGCTTCTGTATCTCTTCCACGGTTCGCTTCCCTGGCAGG
GCTACTCTGGCGAAGACAAGAACATGCAGGTCTGTGAGACCAAAGGTCGC
ATGACAGTCGAAGCCATGTGCCGCGGTGCCCCGGAGGTGCTTCAATACTT
TTTAGCGTATGTTCGCCAAATGAAGTTTGAGGAAGCTCCGGATTATGACT
ACCTCATGTTGCTGTGTGATAGCAGTCGGGGGCTCAAGGAAGTCAAGAAG
CTCTTGATGGCCCAGGAGAGGGAAGAATATTATGAAAACATTCAGCCCGT
CGTGGGGTCCAAGAGGAAACAGCGCGATCCGGACGACATTGGAGCCCCAC
TTGTCAAGAAACACAAAGTTGTTCTCCCGAAACGAATCAAGACACATCAA
TGGATTATAGTTTCCACCAGTGCCCGAACAAATCTATCCCCACAGACCCA
GTGCTACACTTCACACACTTCCTACTCAAATTTGGTCACAGAGGTGGAGA
GAAAGTGGGGACTACTGATGCGGATAACCAGCCTCAACTTTGCTGGTGGT
ATGTGGACCGCTGTGCTCAATTCTCGCAACTCGGGCTACATGGAGCAGGC
CCTACACTACTGCCATGACGCGGAGTTTCCCCGCGAGTGGGTGCGTCAGA
AGTGGGAGCAAGCTTATTTCATCACATCCGTTGCTGGAAATGAAAATTGT
TGGGGTGTCGTGTGCTCCACGATGCAGCGGGGTCGCAAGTACAAGCAGCA
ATCGTATATTGTGTCGTCAACTTTCCCGTCAAAGTGGATTGCAGACAAAT
GGAATGCCGACTTTCACATCACCTCCATTGCCACTCAGGGTCGTTACCAA
ATGCAATGGTGCGTCGTCATGTCGAGAGGTGCACCATACAAAGACCAGTG
TGTCGAGCTAGACTTTCAATACCCCTCCCATTCTATCCATGCACGATGGG
ATGAAAACTACATGATCACCGCTGTTGCATGCACACAAGAGCAGTGTGCG
TTTGTCATGTCAAGAGGAGCATGCTATGGCGAAGAACAGCGGTGCACACG
CACCTCACATGGGCCTCTGCACAAAATACGCGAAGACTGGAATGATTCGC
TGTACGTAACTTGTCTGTCGTATGGACGAGTAAGCTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4643225..4645012-

>Gvermi12414.t1 ID=Gvermi12414.t1|Name=Gvermi12414.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1788bp|location=Sequence derived from alignment at ScGOVlb_3404:4643225..4645012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGACGAGTCGCGCAAGGACCCCGTCCCCGTCCAGGTCGGCGAGGG
CTCTCGCCGCTACATCGTTCTCAAGCATGCTCACCTGGGATCCGGTCACT
TTGGAGACGTCTACATGGGTGAGCACATCCACAGCAGTCGCAAGGTCGCC
ATTAAACTCGAACATCGGTCCGGCTCCATCGCACGCCGCGAATGGGAGGT
CATGCGCTACATGAACGGCGACGGCGCCCCTCGCGTGTACTACACCGGCC
ACCATGGTCGCTACTACGTCATGGTCATGGATCTTCTCGGCCCCACGTTG
CAGCGCCTCTTGGAGAGCCGCCCGCCGCGCGGTCTGTCCTGGGAAACCGT
CTCCGTCATTGGCTACAAGTGTGTTCAGCTGCTGCGCAAGCTGCACACCA
AGGGCTACGTCCACGGCGACGTCAAGCCCGAGAACTTTCTGTGCGCTTAC
TCGGAGGACAATGTCATTGACCCTAGCCGCGGCCTCTTCATGGTCGACCT
GGGGCTCGCCTCCCGGTGGAGAGACCTGTCCAAGCCAGGCGGCCACATCC
CGTACGGCCAGCGAGTAGATCACTTCTCGGGCACCGTGCGCTACGCCTCG
GTCAATGCCCACCTCGGTCGCTGGCTTTCGCGACGTGATGACCTCGAAAG
TCTGGGCTACATGCTTCTGTATCTCTTCCACGGTTCGCTTCCCTGGCAGG
GCTACTCTGGCGAAGACAAGAACATGCAGGTCTGTGAGACCAAAGGTCGC
ATGACAGTCGAAGCCATGTGCCGCGGTGCCCCGGAGGTGCTTCAATACTT
TTTAGCGTATGTTCGCCAAATGAAGTTTGAGGAAGCTCCGGATTATGACT
ACCTCATGTTGCTGTGTGATAGCAGTCGGGGGCTCAAGGAAGTCAAGAAG
CTCTTGATGGCCCAGGAGAGGGAAGAATATTATGAAAACATTCAGCCCGT
CGTGGGGTCCAAGAGGAAACAGCGCGATCCGGACGACATTGGAGCCCCAC
TTGTCAAGAAACACAAAGTTGTTCTCCCGAAACGAATCAAGACACATCAA
TGGATTATAGTTTCCACCAGTGCCCGAACAAATCTATCCCCACAGACCCA
GTGCTACACTTCACACACTTCCTACTCAAATTTGGTCACAGAGGTGGAGA
GAAAGTGGGGACTACTGATGCGGATAACCAGCCTCAACTTTGCTGGTGGT
ATGTGGACCGCTGTGCTCAATTCTCGCAACTCGGGCTACATGGAGCAGGC
CCTACACTACTGCCATGACGCGGAGTTTCCCCGCGAGTGGGTGCGTCAGA
AGTGGGAGCAAGCTTATTTCATCACATCCGTTGCTGGAAATGAAAATTGT
TGGGGTGTCGTGTGCTCCACGATGCAGCGGGGTCGCAAGTACAAGCAGCA
ATCGTATATTGTGTCGTCAACTTTCCCGTCAAAGTGGATTGCAGACAAAT
GGAATGCCGACTTTCACATCACCTCCATTGCCACTCAGGGTCGTTACCAA
ATGCAATGGTGCGTCGTCATGTCGAGAGGTGCACCATACAAAGACCAGTG
TGTCGAGCTAGACTTTCAATACCCCTCCCATTCTATCCATGCACGATGGG
ATGAAAACTACATGATCACCGCTGTTGCATGCACACAAGAGCAGTGTGCG
TTTGTCATGTCAAGAGGAGCATGCTATGGCGAAGAACAGCGGTGCACACG
CACCTCACATGGGCCTCTGCACAAAATACGCGAAGACTGGAATGATTCGC
TGTACGTAACTTGTCTGTCGTATGGACGAGTAAGCTAG
back to top