Gvermi12483.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12483.t1
Unique Name	Gvermi12483.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:5278915..5280717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1541065.JRFE01000028_gene3421
Max annot lvl	1117\|Cyanobacteria
Evalue	1.43e-229
EggNOG OGs	COG0671@1\|root,COG0671@2\|Bacteria,1G24P@1117\|Cyanobacteria,3VIMU@52604\|Pleurocapsales
Description	phosphoesterase, PA-phosphatase related
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12483	Gvermi12483	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 5278915..5280717 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12483.t1.start1	Gvermi12483.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 5278915..5278917 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12483.t1.CDS1	Gvermi12483.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 5278915..5280717 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12483.t1.exon1	Gvermi12483.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 5278915..5280717 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12483.t1.stop1	Gvermi12483.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 5280715..5280717 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12483.t1	Gvermi12483.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 5278915..5280717 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:5278915..5280717+
coding sequence from alignment at ScGOVlb_3404:5278915..5280717+

mRNA sequence

>Gvermi12483.t1 ID=Gvermi12483.t1|Name=Gvermi12483.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=601bp
MSATKHVNRLDASYGVRQQAANLAKSRPHPIHVANAEELRYRFPYDGETN
PGMPSHLGSFTKGLPHDTDTGVLVNPEDFQAFIRAIDAGDDYTIRQVPLG
SPAGFGSGIAKNANVRAWESMAAGLTYDLEGPDAQSVTMPPAPTLDSAEL
VTEISESYWMALLRDVPFKDFDTSVTVKDAVSSLNKTTWIKYGTDPSTIP
LTLTDAQRGRLRGEISTTNVFRGVTPGDAEGPYISQFLLIGNTGISSGNQ
IHDGFIRYGAHRVDQRVRVAEAGRDFMTTWQSFIDVQNGADVRGAELYSD
GFRFIATPRDLATYVHFDALYQAYLNACLILLGMRVPFDKGLPFQLDDAI
DHQQAFATFGSPHILSLVTEVATRALKAVRFQKFNVHRRLRPEAVGGLVE
KFRTKEGDRLYAGVRPLFNALDKELLAKIGMHNQKQNQKSDNGNPRSDDI
GAGPTYLLPMAFPEGSPMHPSYGAGHATVAGACVTILKAYFDHGHELVMK
DRDGKSQPFAFVSNAEGTSLENQVGKYDNKALTVEGELNKVCSNICIGRN
WAGVHYFTDYIESIRVGEQIAIGVLQEQKLTYGENFSMTVPLFDGSTIRI
*

spliced messenger RNA

>Gvermi12483.t1 ID=Gvermi12483.t1|Name=Gvermi12483.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at ScGOVlb_3404:5278915..5280717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCACCAAGCACGTCAACCGCCTTGACGCGTCGTATGGTGTCCG
CCAACAGGCCGCCAATCTCGCCAAGAGTCGCCCGCACCCCATCCACGTCG
CCAATGCCGAAGAGCTTCGCTACCGTTTCCCGTACGATGGAGAAACCAAC
CCGGGCATGCCATCGCACCTGGGCAGTTTCACCAAGGGCCTGCCTCACGA
CACGGACACCGGTGTGCTGGTCAACCCCGAAGACTTCCAGGCATTCATTC
GCGCCATAGACGCCGGCGACGACTACACCATCCGTCAAGTGCCGCTCGGC
TCGCCCGCCGGTTTCGGCTCCGGTATTGCCAAGAACGCCAACGTGCGCGC
GTGGGAGTCCATGGCCGCCGGGCTCACCTATGATCTCGAGGGGCCTGATG
CTCAGAGCGTCACCATGCCGCCCGCCCCGACCCTGGACAGCGCTGAGTTG
GTCACCGAAATTTCCGAGAGCTACTGGATGGCCCTGCTCCGTGATGTGCC
ATTCAAAGACTTTGACACCAGCGTCACCGTGAAAGACGCAGTGAGCAGCT
TGAACAAAACCACGTGGATCAAGTATGGAACGGACCCGTCCACCATCCCG
CTCACGCTCACCGACGCCCAGCGTGGCCGCCTCCGCGGCGAGATCTCCAC
CACCAACGTTTTCCGCGGGGTGACGCCCGGCGATGCGGAAGGCCCGTACA
TTTCGCAGTTCCTTCTCATTGGAAACACCGGTATCTCCAGTGGGAACCAA
ATCCACGACGGTTTCATCCGGTACGGCGCCCATCGTGTGGACCAGAGGGT
GCGCGTGGCCGAGGCGGGACGTGACTTCATGACCACATGGCAGTCCTTCA
TCGACGTTCAAAACGGCGCCGATGTGCGCGGCGCCGAGCTGTACTCGGAC
GGGTTCCGCTTCATTGCGACCCCGCGCGACCTCGCCACCTATGTTCACTT
TGACGCGCTGTACCAGGCGTACCTCAACGCCTGTCTCATTCTGCTCGGCA
TGAGAGTTCCCTTCGACAAGGGATTGCCGTTCCAGCTGGACGATGCCATT
GATCATCAGCAAGCGTTTGCCACCTTTGGAAGCCCGCACATCCTGTCGCT
GGTCACGGAAGTGGCCACTCGCGCGTTGAAGGCGGTGCGATTCCAAAAGT
TCAACGTTCACAGGCGTCTTCGCCCCGAGGCGGTGGGCGGTCTCGTCGAG
AAGTTCCGAACCAAGGAAGGCGACCGATTGTACGCCGGGGTGAGGCCTTT
GTTTAATGCGCTGGATAAGGAATTATTGGCGAAGATTGGCATGCACAACC
AAAAGCAAAACCAAAAATCTGACAACGGAAACCCCAGATCCGATGACATA
GGTGCGGGCCCTACCTATCTGCTGCCGATGGCATTCCCGGAAGGAAGTCC
CATGCATCCGAGCTACGGCGCCGGTCATGCAACGGTGGCTGGTGCTTGCG
TCACCATTCTCAAGGCGTACTTTGATCATGGCCATGAGTTGGTCATGAAG
GATAGGGACGGAAAATCGCAGCCGTTTGCATTCGTGTCCAATGCTGAAGG
TACGAGTTTGGAGAACCAGGTGGGCAAGTATGACAATAAGGCGCTCACGG
TGGAGGGTGAACTGAACAAGGTATGCTCTAACATCTGCATCGGCCGTAAT
TGGGCCGGCGTGCACTACTTTACCGATTACATTGAATCAATCAGGGTTGG
TGAGCAAATTGCCATCGGAGTGTTGCAGGAACAAAAGTTGACGTACGGCG
AGAACTTTTCGATGACGGTACCCCTGTTTGACGGCTCCACTATCCGCATC
TAA

protein sequence of Gvermi12483.t1

>Gvermi12483.t1 ID=Gvermi12483.t1|Name=Gvermi12483.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=601bp
MSATKHVNRLDASYGVRQQAANLAKSRPHPIHVANAEELRYRFPYDGETN
PGMPSHLGSFTKGLPHDTDTGVLVNPEDFQAFIRAIDAGDDYTIRQVPLG
SPAGFGSGIAKNANVRAWESMAAGLTYDLEGPDAQSVTMPPAPTLDSAEL
VTEISESYWMALLRDVPFKDFDTSVTVKDAVSSLNKTTWIKYGTDPSTIP
LTLTDAQRGRLRGEISTTNVFRGVTPGDAEGPYISQFLLIGNTGISSGNQ
IHDGFIRYGAHRVDQRVRVAEAGRDFMTTWQSFIDVQNGADVRGAELYSD
GFRFIATPRDLATYVHFDALYQAYLNACLILLGMRVPFDKGLPFQLDDAI
DHQQAFATFGSPHILSLVTEVATRALKAVRFQKFNVHRRLRPEAVGGLVE
KFRTKEGDRLYAGVRPLFNALDKELLAKIGMHNQKQNQKSDNGNPRSDDI
GAGPTYLLPMAFPEGSPMHPSYGAGHATVAGACVTILKAYFDHGHELVMK
DRDGKSQPFAFVSNAEGTSLENQVGKYDNKALTVEGELNKVCSNICIGRN
WAGVHYFTDYIESIRVGEQIAIGVLQEQKLTYGENFSMTVPLFDGSTIRI
*

mRNA from alignment at ScGOVlb_3404:5278915..5280717+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12483.t1 ID=Gvermi12483.t1|Name=Gvermi12483.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at ScGOVlb_3404:5278915..5280717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCCACCAAGCACGTCAACCGCCTTGACGCGTCGTATGGTGTCCG
CCAACAGGCCGCCAATCTCGCCAAGAGTCGCCCGCACCCCATCCACGTCG
CCAATGCCGAAGAGCTTCGCTACCGTTTCCCGTACGATGGAGAAACCAAC
CCGGGCATGCCATCGCACCTGGGCAGTTTCACCAAGGGCCTGCCTCACGA
CACGGACACCGGTGTGCTGGTCAACCCCGAAGACTTCCAGGCATTCATTC
GCGCCATAGACGCCGGCGACGACTACACCATCCGTCAAGTGCCGCTCGGC
TCGCCCGCCGGTTTCGGCTCCGGTATTGCCAAGAACGCCAACGTGCGCGC
GTGGGAGTCCATGGCCGCCGGGCTCACCTATGATCTCGAGGGGCCTGATG
CTCAGAGCGTCACCATGCCGCCCGCCCCGACCCTGGACAGCGCTGAGTTG
GTCACCGAAATTTCCGAGAGCTACTGGATGGCCCTGCTCCGTGATGTGCC
ATTCAAAGACTTTGACACCAGCGTCACCGTGAAAGACGCAGTGAGCAGCT
TGAACAAAACCACGTGGATCAAGTATGGAACGGACCCGTCCACCATCCCG
CTCACGCTCACCGACGCCCAGCGTGGCCGCCTCCGCGGCGAGATCTCCAC
CACCAACGTTTTCCGCGGGGTGACGCCCGGCGATGCGGAAGGCCCGTACA
TTTCGCAGTTCCTTCTCATTGGAAACACCGGTATCTCCAGTGGGAACCAA
ATCCACGACGGTTTCATCCGGTACGGCGCCCATCGTGTGGACCAGAGGGT
GCGCGTGGCCGAGGCGGGACGTGACTTCATGACCACATGGCAGTCCTTCA
TCGACGTTCAAAACGGCGCCGATGTGCGCGGCGCCGAGCTGTACTCGGAC
GGGTTCCGCTTCATTGCGACCCCGCGCGACCTCGCCACCTATGTTCACTT
TGACGCGCTGTACCAGGCGTACCTCAACGCCTGTCTCATTCTGCTCGGCA
TGAGAGTTCCCTTCGACAAGGGATTGCCGTTCCAGCTGGACGATGCCATT
GATCATCAGCAAGCGTTTGCCACCTTTGGAAGCCCGCACATCCTGTCGCT
GGTCACGGAAGTGGCCACTCGCGCGTTGAAGGCGGTGCGATTCCAAAAGT
TCAACGTTCACAGGCGTCTTCGCCCCGAGGCGGTGGGCGGTCTCGTCGAG
AAGTTCCGAACCAAGGAAGGCGACCGATTGTACGCCGGGGTGAGGCCTTT
GTTTAATGCGCTGGATAAGGAATTATTGGCGAAGATTGGCATGCACAACC
AAAAGCAAAACCAAAAATCTGACAACGGAAACCCCAGATCCGATGACATA
GGTGCGGGCCCTACCTATCTGCTGCCGATGGCATTCCCGGAAGGAAGTCC
CATGCATCCGAGCTACGGCGCCGGTCATGCAACGGTGGCTGGTGCTTGCG
TCACCATTCTCAAGGCGTACTTTGATCATGGCCATGAGTTGGTCATGAAG
GATAGGGACGGAAAATCGCAGCCGTTTGCATTCGTGTCCAATGCTGAAGG
TACGAGTTTGGAGAACCAGGTGGGCAAGTATGACAATAAGGCGCTCACGG
TGGAGGGTGAACTGAACAAGGTATGCTCTAACATCTGCATCGGCCGTAAT
TGGGCCGGCGTGCACTACTTTACCGATTACATTGAATCAATCAGGGTTGG
TGAGCAAATTGCCATCGGAGTGTTGCAGGAACAAAAGTTGACGTACGGCG
AGAACTTTTCGATGACGGTACCCCTGTTTGACGGCTCCACTATCCGCATC
TAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:5278915..5280717+

>Gvermi12483.t1 ID=Gvermi12483.t1|Name=Gvermi12483.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1803bp|location=Sequence derived from alignment at ScGOVlb_3404:5278915..5280717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCCACCAAGCACGTCAACCGCCTTGACGCGTCGTATGGTGTCCG
CCAACAGGCCGCCAATCTCGCCAAGAGTCGCCCGCACCCCATCCACGTCG
CCAATGCCGAAGAGCTTCGCTACCGTTTCCCGTACGATGGAGAAACCAAC
CCGGGCATGCCATCGCACCTGGGCAGTTTCACCAAGGGCCTGCCTCACGA
CACGGACACCGGTGTGCTGGTCAACCCCGAAGACTTCCAGGCATTCATTC
GCGCCATAGACGCCGGCGACGACTACACCATCCGTCAAGTGCCGCTCGGC
TCGCCCGCCGGTTTCGGCTCCGGTATTGCCAAGAACGCCAACGTGCGCGC
GTGGGAGTCCATGGCCGCCGGGCTCACCTATGATCTCGAGGGGCCTGATG
CTCAGAGCGTCACCATGCCGCCCGCCCCGACCCTGGACAGCGCTGAGTTG
GTCACCGAAATTTCCGAGAGCTACTGGATGGCCCTGCTCCGTGATGTGCC
ATTCAAAGACTTTGACACCAGCGTCACCGTGAAAGACGCAGTGAGCAGCT
TGAACAAAACCACGTGGATCAAGTATGGAACGGACCCGTCCACCATCCCG
CTCACGCTCACCGACGCCCAGCGTGGCCGCCTCCGCGGCGAGATCTCCAC
CACCAACGTTTTCCGCGGGGTGACGCCCGGCGATGCGGAAGGCCCGTACA
TTTCGCAGTTCCTTCTCATTGGAAACACCGGTATCTCCAGTGGGAACCAA
ATCCACGACGGTTTCATCCGGTACGGCGCCCATCGTGTGGACCAGAGGGT
GCGCGTGGCCGAGGCGGGACGTGACTTCATGACCACATGGCAGTCCTTCA
TCGACGTTCAAAACGGCGCCGATGTGCGCGGCGCCGAGCTGTACTCGGAC
GGGTTCCGCTTCATTGCGACCCCGCGCGACCTCGCCACCTATGTTCACTT
TGACGCGCTGTACCAGGCGTACCTCAACGCCTGTCTCATTCTGCTCGGCA
TGAGAGTTCCCTTCGACAAGGGATTGCCGTTCCAGCTGGACGATGCCATT
GATCATCAGCAAGCGTTTGCCACCTTTGGAAGCCCGCACATCCTGTCGCT
GGTCACGGAAGTGGCCACTCGCGCGTTGAAGGCGGTGCGATTCCAAAAGT
TCAACGTTCACAGGCGTCTTCGCCCCGAGGCGGTGGGCGGTCTCGTCGAG
AAGTTCCGAACCAAGGAAGGCGACCGATTGTACGCCGGGGTGAGGCCTTT
GTTTAATGCGCTGGATAAGGAATTATTGGCGAAGATTGGCATGCACAACC
AAAAGCAAAACCAAAAATCTGACAACGGAAACCCCAGATCCGATGACATA
GGTGCGGGCCCTACCTATCTGCTGCCGATGGCATTCCCGGAAGGAAGTCC
CATGCATCCGAGCTACGGCGCCGGTCATGCAACGGTGGCTGGTGCTTGCG
TCACCATTCTCAAGGCGTACTTTGATCATGGCCATGAGTTGGTCATGAAG
GATAGGGACGGAAAATCGCAGCCGTTTGCATTCGTGTCCAATGCTGAAGG
TACGAGTTTGGAGAACCAGGTGGGCAAGTATGACAATAAGGCGCTCACGG
TGGAGGGTGAACTGAACAAGGTATGCTCTAACATCTGCATCGGCCGTAAT
TGGGCCGGCGTGCACTACTTTACCGATTACATTGAATCAATCAGGGTTGG
TGAGCAAATTGCCATCGGAGTGTTGCAGGAACAAAAGTTGACGTACGGCG
AGAACTTTTCGATGACGGTACCCCTGTTTGACGGCTCCACTATCCGCATC
TAA