Gvermi12335.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12335.t1
Unique NameGvermi12335.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4262654..4263871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR10G12270.1
PFAMsSHQ1,zf-HIT
Max annot lvl35493|Streptophyta
Evalue5.56e-12
EggNOG OGsKOG1363@1|root,KOG4317@1|root,KOG1363@2759|Eukaryota,KOG4317@2759|Eukaryota,37Q2Q@33090|Viridiplantae,3GBVY@35493|Streptophyta,3KMSZ@4447|Liliopsida,3I64F@38820|Poales
DescriptionSHQ1 protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12335Gvermi12335Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4262654..4263871 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12335.t1.start1Gvermi12335.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4262654..4262656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12335.t1.CDS1Gvermi12335.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4262654..4263871 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12335.t1.exon1Gvermi12335.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4262654..4263871 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12335.t1.stop1Gvermi12335.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4263869..4263871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12335.t1Gvermi12335.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4262654..4263871 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12335.t1 ID=Gvermi12335.t1|Name=Gvermi12335.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=406bp
MRRDDDLQLFQDFEPSSSDSNRRAPDERQASSGVCGSDSEESEQPLRSLS
KGENEPHVLEQLLNAMNDDEKETFFSMFNVLMERACGSRSVPPKDGSGKG
SQGTLIGSSSTCNPAGSLNDSSGGFDCGEQQQETDSKREDIADTLEDLVQ
DMEELNLTYEQILSKLPRELADKFFDHLKEASFHETLKPWRPWWHVSRDD
DGDDEEAIEPPPLPKAEELVVSPEVPKRAASPLLINCVIDVLNAICLSLR
LYDGDCLSDAFHAAKAIWRLSPTLSADDRYTTVSQACRACIEVVSKCYGR
EVALATLEDAACVLGGCSDWVTRCLFYGQTVLREGRKVVRVQGGRRAIKW
GTKKIGFMVAWALCQESFVFTHAARSVGSFVEMERGRCEELRVAKRVVRL
VSIEK*
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spliced messenger RNA

>Gvermi12335.t1 ID=Gvermi12335.t1|Name=Gvermi12335.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3404:4262654..4263871+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACGCGACGATGATCTGCAACTGTTTCAGGACTTTGAGCCATCTTC
TTCTGATTCAAATCGACGGGCTCCCGACGAGAGACAAGCAAGTTCTGGAG
TTTGTGGGTCAGACTCTGAGGAAAGCGAACAGCCTTTGCGGTCTCTTTCA
AAGGGCGAAAACGAACCCCACGTTCTGGAGCAGCTGCTGAATGCGATGAA
CGACGATGAGAAGGAAACTTTCTTTTCTATGTTTAACGTGCTCATGGAAC
GTGCCTGTGGGTCACGTTCCGTTCCTCCCAAGGATGGTTCTGGAAAAGGT
AGCCAAGGCACATTGATCGGCTCGTCCTCTACATGCAACCCAGCAGGATC
ACTTAATGATTCATCTGGTGGTTTCGACTGTGGGGAGCAACAGCAAGAAA
CAGACTCAAAACGAGAAGACATTGCGGACACTCTTGAAGACCTGGTGCAG
GACATGGAAGAGCTGAACTTGACTTATGAACAAATCTTGTCAAAGCTTCC
GCGAGAGCTTGCCGACAAATTCTTTGACCATCTGAAAGAGGCCAGTTTTC
ATGAAACACTCAAGCCTTGGCGTCCGTGGTGGCATGTTTCGCGTGATGAT
GACGGAGACGACGAAGAGGCGATCGAACCCCCTCCACTTCCGAAAGCAGA
GGAACTTGTTGTATCTCCTGAAGTACCGAAGCGGGCAGCATCACCGCTCT
TAATCAATTGTGTCATCGATGTTTTAAACGCGATCTGTCTGTCCCTTCGA
CTCTACGACGGGGACTGTCTTTCTGACGCTTTTCACGCAGCAAAGGCAAT
ATGGAGACTTTCGCCGACCTTGTCAGCAGACGATCGTTATACCACAGTCA
GTCAAGCATGTCGGGCGTGTATTGAAGTCGTCAGCAAGTGCTATGGGAGG
GAGGTTGCGCTCGCAACGCTAGAGGACGCTGCTTGTGTGCTAGGAGGCTG
TTCTGACTGGGTAACACGCTGTCTATTTTACGGCCAAACTGTATTACGGG
AAGGGCGGAAAGTAGTACGAGTGCAGGGTGGTCGGAGGGCTATCAAATGG
GGAACCAAAAAGATTGGTTTCATGGTTGCATGGGCTCTTTGTCAGGAAAG
CTTTGTGTTCACACACGCAGCAAGAAGTGTCGGCTCTTTTGTTGAGATGG
AGCGGGGAAGGTGTGAAGAGCTCCGAGTGGCGAAAAGAGTGGTTCGATTG
GTTTCAATTGAGAAATAA
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protein sequence of Gvermi12335.t1

>Gvermi12335.t1 ID=Gvermi12335.t1|Name=Gvermi12335.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=406bp
MRRDDDLQLFQDFEPSSSDSNRRAPDERQASSGVCGSDSEESEQPLRSLS
KGENEPHVLEQLLNAMNDDEKETFFSMFNVLMERACGSRSVPPKDGSGKG
SQGTLIGSSSTCNPAGSLNDSSGGFDCGEQQQETDSKREDIADTLEDLVQ
DMEELNLTYEQILSKLPRELADKFFDHLKEASFHETLKPWRPWWHVSRDD
DGDDEEAIEPPPLPKAEELVVSPEVPKRAASPLLINCVIDVLNAICLSLR
LYDGDCLSDAFHAAKAIWRLSPTLSADDRYTTVSQACRACIEVVSKCYGR
EVALATLEDAACVLGGCSDWVTRCLFYGQTVLREGRKVVRVQGGRRAIKW
GTKKIGFMVAWALCQESFVFTHAARSVGSFVEMERGRCEELRVAKRVVRL
VSIEK*
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mRNA from alignment at ScGOVlb_3404:4262654..4263871+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12335.t1 ID=Gvermi12335.t1|Name=Gvermi12335.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3404:4262654..4263871+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACGCGACGATGATCTGCAACTGTTTCAGGACTTTGAGCCATCTTC
TTCTGATTCAAATCGACGGGCTCCCGACGAGAGACAAGCAAGTTCTGGAG
TTTGTGGGTCAGACTCTGAGGAAAGCGAACAGCCTTTGCGGTCTCTTTCA
AAGGGCGAAAACGAACCCCACGTTCTGGAGCAGCTGCTGAATGCGATGAA
CGACGATGAGAAGGAAACTTTCTTTTCTATGTTTAACGTGCTCATGGAAC
GTGCCTGTGGGTCACGTTCCGTTCCTCCCAAGGATGGTTCTGGAAAAGGT
AGCCAAGGCACATTGATCGGCTCGTCCTCTACATGCAACCCAGCAGGATC
ACTTAATGATTCATCTGGTGGTTTCGACTGTGGGGAGCAACAGCAAGAAA
CAGACTCAAAACGAGAAGACATTGCGGACACTCTTGAAGACCTGGTGCAG
GACATGGAAGAGCTGAACTTGACTTATGAACAAATCTTGTCAAAGCTTCC
GCGAGAGCTTGCCGACAAATTCTTTGACCATCTGAAAGAGGCCAGTTTTC
ATGAAACACTCAAGCCTTGGCGTCCGTGGTGGCATGTTTCGCGTGATGAT
GACGGAGACGACGAAGAGGCGATCGAACCCCCTCCACTTCCGAAAGCAGA
GGAACTTGTTGTATCTCCTGAAGTACCGAAGCGGGCAGCATCACCGCTCT
TAATCAATTGTGTCATCGATGTTTTAAACGCGATCTGTCTGTCCCTTCGA
CTCTACGACGGGGACTGTCTTTCTGACGCTTTTCACGCAGCAAAGGCAAT
ATGGAGACTTTCGCCGACCTTGTCAGCAGACGATCGTTATACCACAGTCA
GTCAAGCATGTCGGGCGTGTATTGAAGTCGTCAGCAAGTGCTATGGGAGG
GAGGTTGCGCTCGCAACGCTAGAGGACGCTGCTTGTGTGCTAGGAGGCTG
TTCTGACTGGGTAACACGCTGTCTATTTTACGGCCAAACTGTATTACGGG
AAGGGCGGAAAGTAGTACGAGTGCAGGGTGGTCGGAGGGCTATCAAATGG
GGAACCAAAAAGATTGGTTTCATGGTTGCATGGGCTCTTTGTCAGGAAAG
CTTTGTGTTCACACACGCAGCAAGAAGTGTCGGCTCTTTTGTTGAGATGG
AGCGGGGAAGGTGTGAAGAGCTCCGAGTGGCGAAAAGAGTGGTTCGATTG
GTTTCAATTGAGAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4262654..4263871+

>Gvermi12335.t1 ID=Gvermi12335.t1|Name=Gvermi12335.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3404:4262654..4263871+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACGCGACGATGATCTGCAACTGTTTCAGGACTTTGAGCCATCTTC
TTCTGATTCAAATCGACGGGCTCCCGACGAGAGACAAGCAAGTTCTGGAG
TTTGTGGGTCAGACTCTGAGGAAAGCGAACAGCCTTTGCGGTCTCTTTCA
AAGGGCGAAAACGAACCCCACGTTCTGGAGCAGCTGCTGAATGCGATGAA
CGACGATGAGAAGGAAACTTTCTTTTCTATGTTTAACGTGCTCATGGAAC
GTGCCTGTGGGTCACGTTCCGTTCCTCCCAAGGATGGTTCTGGAAAAGGT
AGCCAAGGCACATTGATCGGCTCGTCCTCTACATGCAACCCAGCAGGATC
ACTTAATGATTCATCTGGTGGTTTCGACTGTGGGGAGCAACAGCAAGAAA
CAGACTCAAAACGAGAAGACATTGCGGACACTCTTGAAGACCTGGTGCAG
GACATGGAAGAGCTGAACTTGACTTATGAACAAATCTTGTCAAAGCTTCC
GCGAGAGCTTGCCGACAAATTCTTTGACCATCTGAAAGAGGCCAGTTTTC
ATGAAACACTCAAGCCTTGGCGTCCGTGGTGGCATGTTTCGCGTGATGAT
GACGGAGACGACGAAGAGGCGATCGAACCCCCTCCACTTCCGAAAGCAGA
GGAACTTGTTGTATCTCCTGAAGTACCGAAGCGGGCAGCATCACCGCTCT
TAATCAATTGTGTCATCGATGTTTTAAACGCGATCTGTCTGTCCCTTCGA
CTCTACGACGGGGACTGTCTTTCTGACGCTTTTCACGCAGCAAAGGCAAT
ATGGAGACTTTCGCCGACCTTGTCAGCAGACGATCGTTATACCACAGTCA
GTCAAGCATGTCGGGCGTGTATTGAAGTCGTCAGCAAGTGCTATGGGAGG
GAGGTTGCGCTCGCAACGCTAGAGGACGCTGCTTGTGTGCTAGGAGGCTG
TTCTGACTGGGTAACACGCTGTCTATTTTACGGCCAAACTGTATTACGGG
AAGGGCGGAAAGTAGTACGAGTGCAGGGTGGTCGGAGGGCTATCAAATGG
GGAACCAAAAAGATTGGTTTCATGGTTGCATGGGCTCTTTGTCAGGAAAG
CTTTGTGTTCACACACGCAGCAAGAAGTGTCGGCTCTTTTGTTGAGATGG
AGCGGGGAAGGTGTGAAGAGCTCCGAGTGGCGAAAAGAGTGGTTCGATTG
GTTTCAATTGAGAAATAA
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