Gvermi12296.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12296.t1
Unique NameGvermi12296.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length176
Homology
BLAST of Gvermi12296.t1 vs. uniprot
Match: A0A2V3J357_9FLOR (Zinc finger matrin-type protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J357_9FLOR)

HSP 1 Score: 247 bits (631), Expect = 2.320e-81
Identity = 129/171 (75.44%), Postives = 151/171 (88.30%), Query Frame = 0
Query:    1 MNSQSHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVVASVKRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRDAQRKEKENGPLTLKERIKARKMQEKNKKS 171
            M+  + DVSRK+WD+AAFEKRA++R+RAEKEAE EKLRA KAAR A+ +D+DPFAPTRAWLTKR+HDIDLE+KVGTVEVV SV++SGFYCKLCDT MKDSNRYLQHVNSRFHQKALGMSMRVRRST ++I+ AF++EVRKR AQ  +  NGPLTLK RI ARK +EK K+S
Sbjct:    1 MSFPARDVSRKNWDLAAFEKRAKDRRRAEKEAEAEKLRAHKAAREASHIDDDPFAPTRAWLTKRDHDIDLESKVGTVEVVPSVQKSGFYCKLCDTTMKDSNRYLQHVNSRFHQKALGMSMRVRRSTAQEIRNAFDEEVRKRAAQGTKARNGPLTLKRRIIARKAEEKKKRS 171          
BLAST of Gvermi12296.t1 vs. uniprot
Match: R7Q6B4_CHOCR (Zinc finger, matrin type 2, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6B4_CHOCR)

HSP 1 Score: 185 bits (469), Expect = 9.340e-57
Identity = 94/159 (59.12%), Postives = 122/159 (76.73%), Query Frame = 0
Query:    1 MNSQSHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVVASVKRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRDAQRKEKENGPLTLKERI 159
            M S S DVSR+SWDV A+E+RA ER+RAE EAE EKLRARKA+R    +D+DPFAPTRAWL KR+H ID E KVG+ E+V S++  GF CK C   +KDSNRYL HVNS+ HQKALGMSMRV+RST E+++ AF+  V++++  ++ K    +TL++RI
Sbjct:    1 MASGSGDVSRRSWDVQAYERRAVERKRAESEAEQEKLRARKASRQQPHIDDDPFAPTRAWLRKRDHKIDFEGKVGSSEIVGSIQGGGFNCKTCSVTLKDSNRYLAHVNSKSHQKALGMSMRVKRSTPEEVRLAFQRAVKEKEESKQRKNKPMVTLEDRI 159          
BLAST of Gvermi12296.t1 vs. uniprot
Match: A0A7S2ZNG5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNG5_9RHOD)

HSP 1 Score: 120 bits (301), Expect = 6.400e-31
Identity = 65/134 (48.51%), Postives = 89/134 (66.42%), Query Frame = 0
Query:    3 SQSHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVV--ASVKRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAF 134
            S  +DV R  +D A F++RA ER+RA+            A+R   P  EDPFAPTR WL  R+  +DLE+K+G  E+V  A  KR+GFYC +C++  KDS  YL H+NSRFHQK LG+SMRV+R+TV++++  F
Sbjct:    5 SSVNDVVRNRFDKATFQRRADERKRADXXXXXXXXXXXXASR---PNTEDPFAPTRPWLEARKDAVDLESKLGKTEIVPGARDKRAGFYCNICESLHKDSQAYLNHMNSRFHQKNLGLSMRVKRATVDEVKDRF 135          
BLAST of Gvermi12296.t1 vs. uniprot
Match: M2XTG5_GALSU (U4/U6.U5 tri-snRNP component SNU23 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XTG5_GALSU)

HSP 1 Score: 102 bits (254), Expect = 5.360e-24
Identity = 57/140 (40.71%), Postives = 80/140 (57.14%), Query Frame = 0
Query:    5 SHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVVASV--KRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRD 142
            S+   R++WD A FE +A+E+                         +DPFAPTR+WL +R++ +D E +VG   VV+S+  K SGFYC++C    KDSN YL H+NSR HQK LGMS+RV R  V+ ++   E   R +D
Sbjct:   17 SNVTGRRTWDKAFFEVKAKEQXXX-----XXXXXXXXXXXXXXXXQDDPFAPTRSWLERRDYQLDFEKRVGKATVVSSLRDKNSGFYCEICKVLQKDSNAYLNHLNSRIHQKNLGMSLRVERVDVDSVKSRIEKLSRYKD 151          
BLAST of Gvermi12296.t1 vs. uniprot
Match: A0A0D3FQZ2_9ORYZ (U1-type domain-containing protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3FQZ2_9ORYZ)

HSP 1 Score: 95.5 bits (236), Expect = 3.240e-21
Identity = 52/137 (37.96%), Postives = 85/137 (62.04%), Query Frame = 0
Query:   10 RKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVVASV----KRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRD 142
            R+ +D   + +RA++R+R EKE       ARK      PV   P       L  R++++DLE+++G  +VV  +    +++G+YCK+C+  +KDS  YL H+N + HQ+ALGMSMRV R+++E +QK FE   +++D
Sbjct:   32 RRKFDKEEYLERARQREREEKEE------ARKGKEKGPPVQRQP-------LKHRDYEVDLESRLGKTQVVTPIAPLSQQAGYYCKVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQKRFESLKKRKD 155          
BLAST of Gvermi12296.t1 vs. uniprot
Match: A0A250XEA1_9CHLO (U1-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XEA1_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 7.610e-21
Identity = 54/142 (38.03%), Postives = 87/142 (61.27%), Query Frame = 0
Query:    3 SQSHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAP----TRAWLTKREHDIDLEAKVGTVEVVASV----KRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFED 136
            S+  + SR++WD   F ++A ER+R +K+  NEK  ARK  R    ++ DP        R+ L +R+  IDL +++G  +VV       +++GFYC +CD  ++DS  YL H+N ++H + LGM+MRV +STVE ++K  E+
Sbjct:   12 SKVDNTSRRTWDKEEFRQKANERERKDKD--NEKYDARKRKR----LERDPLHQGIIVERSQLKQRDFQIDLASRLGKTQVVGVNTPLNQQAGFYCNVCDCVLRDSQSYLDHINGKWHNRNLGMTMRVEKSTVEQVKKKLEE 147          
BLAST of Gvermi12296.t1 vs. uniprot
Match: A0A2T7ECH3_9POAL (U1-type domain-containing protein n=2 Tax=Panicum hallii TaxID=206008 RepID=A0A2T7ECH3_9POAL)

HSP 1 Score: 93.6 bits (231), Expect = 1.220e-20
Identity = 51/140 (36.43%), Postives = 86/140 (61.43%), Query Frame = 0
Query:    7 DVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVVASV----KRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRD 142
            + SR+ +D   + +RA++R++ EKE       ARK      PV   P       L  R++++DLE+++G  +VV  +    +++G+YC +C+  +KDS  YL H+N + HQ+ALGMSMRV R+++E +QK FE   +++D
Sbjct:   10 NTSRRKFDKEEYLERARQREQREKEE------ARKGKERGPPVQRQP-------LKHRDYEVDLESRLGKTQVVTPIAPLNQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQKRFEALKKRKD 136          
BLAST of Gvermi12296.t1 vs. uniprot
Match: J3LUG6_ORYBR (U1-type domain-containing protein n=14 Tax=Poaceae TaxID=4479 RepID=J3LUG6_ORYBR)

HSP 1 Score: 92.8 bits (229), Expect = 2.580e-20
Identity = 51/137 (37.23%), Postives = 84/137 (61.31%), Query Frame = 0
Query:   10 RKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVVASV----KRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRD 142
            R+ +D   + +RA++R+R EKE       ARK      PV   P       L  R++++DLE+++G  +VV  +    +++G+YC +C+  +KDS  YL H+N + HQ+ALGMSMRV R+++E +QK FE   +++D
Sbjct:   13 RRKFDKEEYLERARQREREEKEE------ARKGKDKGPPVQRQP-------LKHRDYEVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQKRFESLKKRKD 136          
BLAST of Gvermi12296.t1 vs. uniprot
Match: A0A0M3KCY2_ANISI (Zinc finger matrin-type protein 2 (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KCY2_ANISI)

HSP 1 Score: 92.8 bits (229), Expect = 3.220e-20
Identity = 54/144 (37.50%), Postives = 86/144 (59.72%), Query Frame = 0
Query:   10 RKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVV----ASVKRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRDAQRKEKE 149
            R+ WD   +E++A+ER  AE+EAE +        +  T    D     R  L  RE+ +DLE+KVG   V+     S +  G+YC +CD  +KDS  +L H+N + HQ+ +GMSM+++RST++D++K F    +K +A+ K+KE
Sbjct:   17 RRKWDREEYERKARERILAEREAEEQ------TKKKTTYKFPDEHKVKRELLKAREYKVDLESKVGRTVVINKTTPSAETGGYYCDVCDCVVKDSINFLDHINGKNHQRNMGMSMKIKRSTLDDVRKRFS--YKKAEAEVKKKE 152          
BLAST of Gvermi12296.t1 vs. uniprot
Match: A0A183HMQ8_9BILA (Matrin-type domain-containing protein n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183HMQ8_9BILA)

HSP 1 Score: 91.3 bits (225), Expect = 4.110e-20
Identity = 52/144 (36.11%), Postives = 86/144 (59.72%), Query Frame = 0
Query:   10 RKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVDEDPFAPTRAWLTKREHDIDLEAKVGTVEVV----ASVKRSGFYCKLCDTAMKDSNRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRDAQRKEKE 149
            R+ WD   +E++AQER  AEK+ E       K  R      ++P    R  L  RE+ +DLE+KVG   V+     S +  G+YC +CD  +KDS  +L H+N + HQ+ +GMSM+++RST++++++ F  +  +++ Q+KE E
Sbjct:   15 RRKWDREEYERKAQERLLAEKDEET------KGKRKLPRFPDEPKVK-RELLKAREYKVDLESKVGRTVVINKTTPSAETGGYYCDVCDCVVKDSINFLDHINGKNHQRNMGMSMKIKRSTLDEVRQRFAFKKMQKEMQKKEDE 151          
The following BLAST results are available for this feature:
BLAST of Gvermi12296.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J357_9FLOR2.320e-8175.44Zinc finger matrin-type protein 2 n=1 Tax=Gracilar... [more]
R7Q6B4_CHOCR9.340e-5759.12Zinc finger, matrin type 2, putative n=1 Tax=Chond... [more]
A0A7S2ZNG5_9RHOD6.400e-3148.51Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2XTG5_GALSU5.360e-2440.71U4/U6.U5 tri-snRNP component SNU23 n=1 Tax=Galdier... [more]
A0A0D3FQZ2_9ORYZ3.240e-2137.96U1-type domain-containing protein n=1 Tax=Oryza ba... [more]
A0A250XEA1_9CHLO7.610e-2138.03U1-type domain-containing protein n=1 Tax=Chlamydo... [more]
A0A2T7ECH3_9POAL1.220e-2036.43U1-type domain-containing protein n=2 Tax=Panicum ... [more]
J3LUG6_ORYBR2.580e-2037.23U1-type domain-containing protein n=14 Tax=Poaceae... [more]
A0A0M3KCY2_ANISI3.220e-2037.50Zinc finger matrin-type protein 2 (inferred by ort... [more]
A0A183HMQ8_9BILA4.110e-2036.11Matrin-type domain-containing protein n=1 Tax=Onch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..46
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 85..119
e-value: 2.6E-5
score: 33.7
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 88..112
e-value: 3.6E-5
score: 23.9
IPR040107U4/U6.U5 small nuclear ribonucleoprotein component Snu23PANTHERPTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2coord: 4..174
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 90..112
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 86..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4125176..4125703 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12296.t1Gvermi12296.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4125176..4125703 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12296.t1 ID=Gvermi12296.t1|Name=Gvermi12296.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MNSQSHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVD
EDPFAPTRAWLTKREHDIDLEAKVGTVEVVASVKRSGFYCKLCDTAMKDS
NRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRDAQRKEKEN
GPLTLKERIKARKMQEKNKKSDSKH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR022755Znf_C2H2_jaz
IPR040107Snu23
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf