Gvermi12181.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12181.t2
Unique NameGvermi12181.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3736598..3737584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5693.XP_813692.1
PFAMsDUF563
Max annot lvl2759|Eukaryota
Evalue1.8e-07
EggNOG OGs2E14A@1|root,2S8GN@2759|Eukaryota
DescriptionProtein of unknown function (DUF563)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12181Gvermi12181Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3736598..3737584 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12181.t2.stop1Gvermi12181.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3736598..3736600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12181.t2.CDS1Gvermi12181.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3736598..3737584 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12181.t2.exon1Gvermi12181.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3736598..3737584 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12181.t2.start1Gvermi12181.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3737582..3737584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12181.t2Gvermi12181.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3736598..3737584 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12181.t2 ID=Gvermi12181.t2|Name=Gvermi12181.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=329bp
MCLSVFENSYIGPSGVVYEPKTNLVHDMGGGCCTGDWVRYTDDAIPLKRS
SKRFPIVLAMGYHHSVTYHHVINELLPRILPLFPLLDAEPQIYIAIDKSS
VTERLFSVLGIDSTRLIPISLSKPTWIHAAIVLQPPPLFLCRGSWNCTYK
STSVTANALRDAAIGKEAYEEETKDRPKFLLMERARFRKEDGSCNEQRCA
KNFGELKDAIVEEFGEQFEVLIVPPEMAVIETIKIFSAADVIVGVHGAGF
QNIMYCSKGTTVVHIGWGRHYEDLAMEFGLNYHLSKMRSLKRESRNVVVN
VRNIVGDVKAAIKEDRPSVAEGEKAQDG*
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spliced messenger RNA

>Gvermi12181.t2 ID=Gvermi12181.t2|Name=Gvermi12181.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=987bp|location=Sequence derived from alignment at ScGOVlb_3404:3736598..3737584- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCTATCAGTGTTTGAAAACTCTTATATAGGACCGTCTGGAGTGGT
ATACGAGCCCAAAACTAACCTTGTACACGACATGGGCGGTGGCTGTTGCA
CAGGTGATTGGGTGCGATATACAGACGATGCAATACCGTTGAAGCGATCT
TCAAAGCGCTTTCCCATTGTGCTCGCCATGGGTTATCACCATTCTGTAAC
TTATCATCATGTCATCAATGAGTTACTGCCGCGCATACTTCCTCTTTTTC
CTTTGCTTGATGCCGAACCACAAATATACATTGCGATTGATAAAAGTTCG
GTGACGGAACGTTTATTCTCTGTGCTGGGCATTGATTCGACGCGGCTAAT
CCCCATCAGCTTGTCAAAACCTACTTGGATCCATGCGGCGATTGTGTTAC
AGCCTCCTCCACTGTTTCTGTGCAGAGGTAGTTGGAACTGCACGTACAAG
AGTACATCTGTGACTGCCAATGCTTTGCGCGATGCAGCAATCGGAAAGGA
GGCTTATGAAGAAGAAACAAAGGATCGACCAAAGTTCTTGCTGATGGAGC
GCGCTCGGTTCCGAAAAGAAGACGGATCATGCAATGAACAACGATGCGCT
AAGAATTTTGGCGAACTGAAGGATGCGATTGTGGAAGAGTTTGGGGAGCA
GTTTGAAGTATTAATTGTGCCACCAGAAATGGCAGTTATCGAAACTATCA
AGATTTTCTCTGCTGCAGATGTTATTGTAGGTGTTCATGGAGCTGGATTT
CAGAATATAATGTACTGCTCAAAAGGAACCACCGTAGTGCACATTGGGTG
GGGCAGACATTATGAAGACTTGGCCATGGAGTTCGGTCTGAATTATCATT
TGTCGAAAATGCGCTCATTAAAAAGAGAAAGCCGCAATGTTGTGGTGAAT
GTGAGAAATATTGTTGGGGATGTGAAGGCAGCAATTAAGGAAGATCGGCC
AAGTGTTGCAGAGGGTGAGAAAGCGCAAGATGGGTGA
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protein sequence of Gvermi12181.t2

>Gvermi12181.t2 ID=Gvermi12181.t2|Name=Gvermi12181.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=329bp
MCLSVFENSYIGPSGVVYEPKTNLVHDMGGGCCTGDWVRYTDDAIPLKRS
SKRFPIVLAMGYHHSVTYHHVINELLPRILPLFPLLDAEPQIYIAIDKSS
VTERLFSVLGIDSTRLIPISLSKPTWIHAAIVLQPPPLFLCRGSWNCTYK
STSVTANALRDAAIGKEAYEEETKDRPKFLLMERARFRKEDGSCNEQRCA
KNFGELKDAIVEEFGEQFEVLIVPPEMAVIETIKIFSAADVIVGVHGAGF
QNIMYCSKGTTVVHIGWGRHYEDLAMEFGLNYHLSKMRSLKRESRNVVVN
VRNIVGDVKAAIKEDRPSVAEGEKAQDG*
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mRNA from alignment at ScGOVlb_3404:3736598..3737584-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12181.t2 ID=Gvermi12181.t2|Name=Gvermi12181.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=987bp|location=Sequence derived from alignment at ScGOVlb_3404:3736598..3737584- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCTATCAGTGTTTGAAAACTCTTATATAGGACCGTCTGGAGTGGT
ATACGAGCCCAAAACTAACCTTGTACACGACATGGGCGGTGGCTGTTGCA
CAGGTGATTGGGTGCGATATACAGACGATGCAATACCGTTGAAGCGATCT
TCAAAGCGCTTTCCCATTGTGCTCGCCATGGGTTATCACCATTCTGTAAC
TTATCATCATGTCATCAATGAGTTACTGCCGCGCATACTTCCTCTTTTTC
CTTTGCTTGATGCCGAACCACAAATATACATTGCGATTGATAAAAGTTCG
GTGACGGAACGTTTATTCTCTGTGCTGGGCATTGATTCGACGCGGCTAAT
CCCCATCAGCTTGTCAAAACCTACTTGGATCCATGCGGCGATTGTGTTAC
AGCCTCCTCCACTGTTTCTGTGCAGAGGTAGTTGGAACTGCACGTACAAG
AGTACATCTGTGACTGCCAATGCTTTGCGCGATGCAGCAATCGGAAAGGA
GGCTTATGAAGAAGAAACAAAGGATCGACCAAAGTTCTTGCTGATGGAGC
GCGCTCGGTTCCGAAAAGAAGACGGATCATGCAATGAACAACGATGCGCT
AAGAATTTTGGCGAACTGAAGGATGCGATTGTGGAAGAGTTTGGGGAGCA
GTTTGAAGTATTAATTGTGCCACCAGAAATGGCAGTTATCGAAACTATCA
AGATTTTCTCTGCTGCAGATGTTATTGTAGGTGTTCATGGAGCTGGATTT
CAGAATATAATGTACTGCTCAAAAGGAACCACCGTAGTGCACATTGGGTG
GGGCAGACATTATGAAGACTTGGCCATGGAGTTCGGTCTGAATTATCATT
TGTCGAAAATGCGCTCATTAAAAAGAGAAAGCCGCAATGTTGTGGTGAAT
GTGAGAAATATTGTTGGGGATGTGAAGGCAGCAATTAAGGAAGATCGGCC
AAGTGTTGCAGAGGGTGAGAAAGCGCAAGATGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3736598..3737584-

>Gvermi12181.t2 ID=Gvermi12181.t2|Name=Gvermi12181.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=987bp|location=Sequence derived from alignment at ScGOVlb_3404:3736598..3737584- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCTATCAGTGTTTGAAAACTCTTATATAGGACCGTCTGGAGTGGT
ATACGAGCCCAAAACTAACCTTGTACACGACATGGGCGGTGGCTGTTGCA
CAGGTGATTGGGTGCGATATACAGACGATGCAATACCGTTGAAGCGATCT
TCAAAGCGCTTTCCCATTGTGCTCGCCATGGGTTATCACCATTCTGTAAC
TTATCATCATGTCATCAATGAGTTACTGCCGCGCATACTTCCTCTTTTTC
CTTTGCTTGATGCCGAACCACAAATATACATTGCGATTGATAAAAGTTCG
GTGACGGAACGTTTATTCTCTGTGCTGGGCATTGATTCGACGCGGCTAAT
CCCCATCAGCTTGTCAAAACCTACTTGGATCCATGCGGCGATTGTGTTAC
AGCCTCCTCCACTGTTTCTGTGCAGAGGTAGTTGGAACTGCACGTACAAG
AGTACATCTGTGACTGCCAATGCTTTGCGCGATGCAGCAATCGGAAAGGA
GGCTTATGAAGAAGAAACAAAGGATCGACCAAAGTTCTTGCTGATGGAGC
GCGCTCGGTTCCGAAAAGAAGACGGATCATGCAATGAACAACGATGCGCT
AAGAATTTTGGCGAACTGAAGGATGCGATTGTGGAAGAGTTTGGGGAGCA
GTTTGAAGTATTAATTGTGCCACCAGAAATGGCAGTTATCGAAACTATCA
AGATTTTCTCTGCTGCAGATGTTATTGTAGGTGTTCATGGAGCTGGATTT
CAGAATATAATGTACTGCTCAAAAGGAACCACCGTAGTGCACATTGGGTG
GGGCAGACATTATGAAGACTTGGCCATGGAGTTCGGTCTGAATTATCATT
TGTCGAAAATGCGCTCATTAAAAAGAGAAAGCCGCAATGTTGTGGTGAAT
GTGAGAAATATTGTTGGGGATGTGAAGGCAGCAATTAAGGAAGATCGGCC
AAGTGTTGCAGAGGGTGAGAAAGCGCAAGATGGGTGA
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