Gvermi12337.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12337.t1
Unique Name	Gvermi12337.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4268845..4269615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4565.Traes_5DS_947703B41.1
PFAMs	Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08818
Evalue	5.01e-18
EggNOG OGs	KOG0663@1\|root,KOG0663@2759\|Eukaryota,37K03@33090\|Viridiplantae,3GBHU@35493\|Streptophyta,3M3RD@4447\|Liliopsida,3IB6V@38820\|Poales
EC	2.7.11.22
Description	Belongs to the protein kinase superfamily
COG category	T
BRITE	ko00000,ko01000,ko01001,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12337	Gvermi12337	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4268845..4269615 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12337.t1.start1	Gvermi12337.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4268845..4268847 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12337.t1.CDS1	Gvermi12337.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4268845..4269615 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12337.t1.exon1	Gvermi12337.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4268845..4269615 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12337.t1.stop1	Gvermi12337.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4269613..4269615 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12337.t1	Gvermi12337.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4268845..4269615 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4268845..4269615+
coding sequence from alignment at ScGOVlb_3404:4268845..4269615+

mRNA sequence

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=257bp
MELVSAGTLLNHALRTPLSFHNVRLVICQLLNALAHIHSHAIIHRDVKME
NILVTNSKSTVVTKLCDFGLAVRHAPSRPVPHSTSVGTRYAQAPEMVLAA
EKGHSRAHYDSAVDVWACGIVLFALLYNRIPWIGHPSEQATALSAMHQLA
THSKPSIQLMQTVEERLATPPLLQSLLCGLLQPLPAKRLTARAALEHKLF
SDVHQTLNVTRHIQQDLMTSPVSARCAFRRVVSLVRAVECFRLSTLSTVS
RPMVVL*

spliced messenger RNA

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:4268845..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTTGTCTCAGCAGGCACGCTTCTCAATCATGCGCTGCGCACCCC
GCTTTCGTTTCACAACGTGCGCCTCGTCATCTGCCAACTTTTGAACGCCC
TGGCCCATATTCACTCGCATGCCATCATTCACAGGGACGTCAAGATGGAG
AACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTTGTGCGA
TTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCCACAGCA
CTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTCGCCGCT
GAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGTTTGGGC
CTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGTGGATCG
GCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAACTCGCT
ACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGAGAGACT
TGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGCAACCCC
TTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAGCTGTTC
TCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCAGGATTT
GATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCGTATCTC
TTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACCGTTTCA
CGCCCAATGGTCGTTTTGTAA

protein sequence of Gvermi12337.t1

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=257bp
MELVSAGTLLNHALRTPLSFHNVRLVICQLLNALAHIHSHAIIHRDVKME
NILVTNSKSTVVTKLCDFGLAVRHAPSRPVPHSTSVGTRYAQAPEMVLAA
EKGHSRAHYDSAVDVWACGIVLFALLYNRIPWIGHPSEQATALSAMHQLA
THSKPSIQLMQTVEERLATPPLLQSLLCGLLQPLPAKRLTARAALEHKLF
SDVHQTLNVTRHIQQDLMTSPVSARCAFRRVVSLVRAVECFRLSTLSTVS
RPMVVL*

mRNA from alignment at ScGOVlb_3404:4268845..4269615+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:4268845..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACTTGTCTCAGCAGGCACGCTTCTCAATCATGCGCTGCGCACCCC
GCTTTCGTTTCACAACGTGCGCCTCGTCATCTGCCAACTTTTGAACGCCC
TGGCCCATATTCACTCGCATGCCATCATTCACAGGGACGTCAAGATGGAG
AACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTTGTGCGA
TTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCCACAGCA
CTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTCGCCGCT
GAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGTTTGGGC
CTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGTGGATCG
GCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAACTCGCT
ACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGAGAGACT
TGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGCAACCCC
TTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAGCTGTTC
TCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCAGGATTT
GATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCGTATCTC
TTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACCGTTTCA
CGCCCAATGGTCGTTTTGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4268845..4269615+

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:4268845..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACTTGTCTCAGCAGGCACGCTTCTCAATCATGCGCTGCGCACCCC
GCTTTCGTTTCACAACGTGCGCCTCGTCATCTGCCAACTTTTGAACGCCC
TGGCCCATATTCACTCGCATGCCATCATTCACAGGGACGTCAAGATGGAG
AACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTTGTGCGA
TTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCCACAGCA
CTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTCGCCGCT
GAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGTTTGGGC
CTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGTGGATCG
GCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAACTCGCT
ACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGAGAGACT
TGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGCAACCCC
TTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAGCTGTTC
TCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCAGGATTT
GATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCGTATCTC
TTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACCGTTTCA
CGCCCAATGGTCGTTTTGTAA