Gvermi12404.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12404.t1
Unique NameGvermi12404.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4572925..4574439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5057.CADACLAP00006067
PFAMsRRM_1
Max annot lvl4751|Fungi
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0032991,GO:0033120,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048024,GO:0048026,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1903313,GO:1990904
Evalue1.43e-50
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,398J3@33154|Opisthokonta,3NXX8@4751|Fungi,3QP61@4890|Ascomycota,20DZ4@147545|Eurotiomycetes,3S82P@5042|Eurotiales
DescriptionmRNA binding post-transcriptional regulator (Csx1)
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12404Gvermi12404Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4572925..4574439 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12404.t1.stop1Gvermi12404.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4572925..4572927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12404.t1.CDS1Gvermi12404.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4572925..4574439 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12404.t1.exon1Gvermi12404.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4572925..4574439 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12404.t1.start1Gvermi12404.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4574437..4574439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12404.t1Gvermi12404.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4572925..4574439 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12404.t1 ID=Gvermi12404.t1|Name=Gvermi12404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=505bp
MPPATAPMSSSPPPANSRPANGTISIWAGDLDAYMDENFLRQAVTASGWG
PDITRIKVVRDHYSGMHAGYGFLDAASPEAAQRVIACGSGMPIPGTNRCW
RLNMGRNAAVNGTAGTEINIYVGNLEPSVTDYQLMTAFRPRYGSVRHAKV
VCNEYGQSRGYGFVRFANAHDAERAVTEMQGFEFNSKPIRLSHATGRSRG
PNSRGPGHHGYNNHHHASHGGAGHAPPTNKRPRQLMAPDDPTNTTIFIGG
TAPHITDELLWREFSSFGELDGVRVPVNKTGFAFVRFKTRESAVRAKESL
SGTHFQPLNAHKPIRVEWASERIPATKPPPPLVSSDMPVMNYEPNSQPFD
PQFSSSYASNTTGANNSIQEGFNNFHSMPNGSSPSSGANPSVVGLSQPQP
GSVEDNKVSVAGASAVTAMQTAAPVVKNETSPVENGNSNGSGEAEPPSKR
AAVGRSEYAAVAAENTPKKDNVLDVKADAPSGDSPAMQFSWLNSSSTQPT
SSPQ*
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spliced messenger RNA

>Gvermi12404.t1 ID=Gvermi12404.t1|Name=Gvermi12404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at ScGOVlb_3404:4572925..4574439- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCTGCAACTGCTCCAATGTCTTCCTCTCCTCCTCCTGCTAACTC
TCGTCCTGCCAATGGCACAATTTCAATATGGGCTGGCGATCTCGATGCAT
ATATGGATGAAAACTTCCTTCGTCAAGCGGTCACTGCCAGCGGCTGGGGT
CCAGATATCACCCGCATAAAGGTCGTTCGGGACCACTACTCCGGTATGCA
CGCAGGATATGGATTTCTGGACGCCGCTTCCCCCGAGGCTGCTCAAAGAG
TCATAGCCTGTGGCTCTGGAATGCCTATTCCAGGCACCAATCGTTGCTGG
AGACTTAACATGGGTCGAAATGCTGCAGTTAACGGTACTGCTGGCACAGA
GATTAACATTTATGTCGGCAATCTTGAACCTTCAGTAACAGACTACCAGC
TCATGACTGCCTTCCGTCCTCGCTACGGATCGGTGCGTCACGCCAAAGTT
GTATGTAATGAATACGGCCAGTCTCGAGGCTATGGATTTGTTCGCTTTGC
CAACGCACATGATGCCGAACGAGCAGTCACCGAGATGCAGGGTTTCGAGT
TCAACAGCAAGCCTATTCGTCTGTCTCATGCCACGGGACGATCGCGTGGT
CCCAATTCCAGGGGCCCAGGCCATCATGGATATAACAATCATCACCATGC
TTCTCACGGTGGCGCCGGTCACGCTCCCCCGACTAACAAACGTCCTCGTC
AACTCATGGCCCCGGATGACCCCACGAATACCACTATTTTTATCGGCGGC
ACTGCCCCTCACATCACCGATGAGCTTCTGTGGCGCGAGTTTTCTTCCTT
TGGTGAACTCGACGGTGTACGAGTGCCCGTGAACAAGACTGGCTTTGCGT
TTGTGCGATTCAAAACCCGTGAGTCGGCCGTGCGCGCGAAGGAGTCACTT
TCGGGAACTCATTTTCAGCCGTTAAACGCCCACAAGCCTATTCGTGTGGA
ATGGGCCTCTGAGCGAATCCCTGCGACGAAGCCTCCTCCGCCTTTGGTAT
CATCTGACATGCCTGTAATGAATTATGAGCCGAACTCTCAGCCTTTCGAT
CCGCAGTTCTCCTCTTCGTACGCGTCAAACACTACAGGCGCCAATAATTC
TATCCAGGAAGGGTTTAATAACTTTCACAGCATGCCCAACGGATCGTCCC
CTTCATCTGGTGCTAATCCTTCTGTTGTCGGTCTTTCGCAGCCGCAACCT
GGTTCTGTTGAAGACAACAAAGTTTCCGTCGCCGGAGCATCTGCGGTTAC
CGCCATGCAGACAGCCGCACCTGTTGTGAAAAACGAAACTAGCCCTGTCG
AAAACGGAAATTCTAACGGTAGCGGAGAGGCAGAACCACCATCGAAGAGA
GCTGCAGTCGGCCGTTCGGAATACGCTGCAGTTGCTGCTGAGAATACTCC
GAAGAAAGACAATGTTCTCGATGTCAAGGCGGACGCTCCGTCCGGCGATT
CGCCGGCCATGCAGTTCTCTTGGCTCAATTCCTCTTCCACACAGCCTACT
AGTAGTCCTCAGTGA
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protein sequence of Gvermi12404.t1

>Gvermi12404.t1 ID=Gvermi12404.t1|Name=Gvermi12404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=505bp
MPPATAPMSSSPPPANSRPANGTISIWAGDLDAYMDENFLRQAVTASGWG
PDITRIKVVRDHYSGMHAGYGFLDAASPEAAQRVIACGSGMPIPGTNRCW
RLNMGRNAAVNGTAGTEINIYVGNLEPSVTDYQLMTAFRPRYGSVRHAKV
VCNEYGQSRGYGFVRFANAHDAERAVTEMQGFEFNSKPIRLSHATGRSRG
PNSRGPGHHGYNNHHHASHGGAGHAPPTNKRPRQLMAPDDPTNTTIFIGG
TAPHITDELLWREFSSFGELDGVRVPVNKTGFAFVRFKTRESAVRAKESL
SGTHFQPLNAHKPIRVEWASERIPATKPPPPLVSSDMPVMNYEPNSQPFD
PQFSSSYASNTTGANNSIQEGFNNFHSMPNGSSPSSGANPSVVGLSQPQP
GSVEDNKVSVAGASAVTAMQTAAPVVKNETSPVENGNSNGSGEAEPPSKR
AAVGRSEYAAVAAENTPKKDNVLDVKADAPSGDSPAMQFSWLNSSSTQPT
SSPQ*
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mRNA from alignment at ScGOVlb_3404:4572925..4574439-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12404.t1 ID=Gvermi12404.t1|Name=Gvermi12404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at ScGOVlb_3404:4572925..4574439- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCCTGCAACTGCTCCAATGTCTTCCTCTCCTCCTCCTGCTAACTC
TCGTCCTGCCAATGGCACAATTTCAATATGGGCTGGCGATCTCGATGCAT
ATATGGATGAAAACTTCCTTCGTCAAGCGGTCACTGCCAGCGGCTGGGGT
CCAGATATCACCCGCATAAAGGTCGTTCGGGACCACTACTCCGGTATGCA
CGCAGGATATGGATTTCTGGACGCCGCTTCCCCCGAGGCTGCTCAAAGAG
TCATAGCCTGTGGCTCTGGAATGCCTATTCCAGGCACCAATCGTTGCTGG
AGACTTAACATGGGTCGAAATGCTGCAGTTAACGGTACTGCTGGCACAGA
GATTAACATTTATGTCGGCAATCTTGAACCTTCAGTAACAGACTACCAGC
TCATGACTGCCTTCCGTCCTCGCTACGGATCGGTGCGTCACGCCAAAGTT
GTATGTAATGAATACGGCCAGTCTCGAGGCTATGGATTTGTTCGCTTTGC
CAACGCACATGATGCCGAACGAGCAGTCACCGAGATGCAGGGTTTCGAGT
TCAACAGCAAGCCTATTCGTCTGTCTCATGCCACGGGACGATCGCGTGGT
CCCAATTCCAGGGGCCCAGGCCATCATGGATATAACAATCATCACCATGC
TTCTCACGGTGGCGCCGGTCACGCTCCCCCGACTAACAAACGTCCTCGTC
AACTCATGGCCCCGGATGACCCCACGAATACCACTATTTTTATCGGCGGC
ACTGCCCCTCACATCACCGATGAGCTTCTGTGGCGCGAGTTTTCTTCCTT
TGGTGAACTCGACGGTGTACGAGTGCCCGTGAACAAGACTGGCTTTGCGT
TTGTGCGATTCAAAACCCGTGAGTCGGCCGTGCGCGCGAAGGAGTCACTT
TCGGGAACTCATTTTCAGCCGTTAAACGCCCACAAGCCTATTCGTGTGGA
ATGGGCCTCTGAGCGAATCCCTGCGACGAAGCCTCCTCCGCCTTTGGTAT
CATCTGACATGCCTGTAATGAATTATGAGCCGAACTCTCAGCCTTTCGAT
CCGCAGTTCTCCTCTTCGTACGCGTCAAACACTACAGGCGCCAATAATTC
TATCCAGGAAGGGTTTAATAACTTTCACAGCATGCCCAACGGATCGTCCC
CTTCATCTGGTGCTAATCCTTCTGTTGTCGGTCTTTCGCAGCCGCAACCT
GGTTCTGTTGAAGACAACAAAGTTTCCGTCGCCGGAGCATCTGCGGTTAC
CGCCATGCAGACAGCCGCACCTGTTGTGAAAAACGAAACTAGCCCTGTCG
AAAACGGAAATTCTAACGGTAGCGGAGAGGCAGAACCACCATCGAAGAGA
GCTGCAGTCGGCCGTTCGGAATACGCTGCAGTTGCTGCTGAGAATACTCC
GAAGAAAGACAATGTTCTCGATGTCAAGGCGGACGCTCCGTCCGGCGATT
CGCCGGCCATGCAGTTCTCTTGGCTCAATTCCTCTTCCACACAGCCTACT
AGTAGTCCTCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4572925..4574439-

>Gvermi12404.t1 ID=Gvermi12404.t1|Name=Gvermi12404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1515bp|location=Sequence derived from alignment at ScGOVlb_3404:4572925..4574439- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCCTGCAACTGCTCCAATGTCTTCCTCTCCTCCTCCTGCTAACTC
TCGTCCTGCCAATGGCACAATTTCAATATGGGCTGGCGATCTCGATGCAT
ATATGGATGAAAACTTCCTTCGTCAAGCGGTCACTGCCAGCGGCTGGGGT
CCAGATATCACCCGCATAAAGGTCGTTCGGGACCACTACTCCGGTATGCA
CGCAGGATATGGATTTCTGGACGCCGCTTCCCCCGAGGCTGCTCAAAGAG
TCATAGCCTGTGGCTCTGGAATGCCTATTCCAGGCACCAATCGTTGCTGG
AGACTTAACATGGGTCGAAATGCTGCAGTTAACGGTACTGCTGGCACAGA
GATTAACATTTATGTCGGCAATCTTGAACCTTCAGTAACAGACTACCAGC
TCATGACTGCCTTCCGTCCTCGCTACGGATCGGTGCGTCACGCCAAAGTT
GTATGTAATGAATACGGCCAGTCTCGAGGCTATGGATTTGTTCGCTTTGC
CAACGCACATGATGCCGAACGAGCAGTCACCGAGATGCAGGGTTTCGAGT
TCAACAGCAAGCCTATTCGTCTGTCTCATGCCACGGGACGATCGCGTGGT
CCCAATTCCAGGGGCCCAGGCCATCATGGATATAACAATCATCACCATGC
TTCTCACGGTGGCGCCGGTCACGCTCCCCCGACTAACAAACGTCCTCGTC
AACTCATGGCCCCGGATGACCCCACGAATACCACTATTTTTATCGGCGGC
ACTGCCCCTCACATCACCGATGAGCTTCTGTGGCGCGAGTTTTCTTCCTT
TGGTGAACTCGACGGTGTACGAGTGCCCGTGAACAAGACTGGCTTTGCGT
TTGTGCGATTCAAAACCCGTGAGTCGGCCGTGCGCGCGAAGGAGTCACTT
TCGGGAACTCATTTTCAGCCGTTAAACGCCCACAAGCCTATTCGTGTGGA
ATGGGCCTCTGAGCGAATCCCTGCGACGAAGCCTCCTCCGCCTTTGGTAT
CATCTGACATGCCTGTAATGAATTATGAGCCGAACTCTCAGCCTTTCGAT
CCGCAGTTCTCCTCTTCGTACGCGTCAAACACTACAGGCGCCAATAATTC
TATCCAGGAAGGGTTTAATAACTTTCACAGCATGCCCAACGGATCGTCCC
CTTCATCTGGTGCTAATCCTTCTGTTGTCGGTCTTTCGCAGCCGCAACCT
GGTTCTGTTGAAGACAACAAAGTTTCCGTCGCCGGAGCATCTGCGGTTAC
CGCCATGCAGACAGCCGCACCTGTTGTGAAAAACGAAACTAGCCCTGTCG
AAAACGGAAATTCTAACGGTAGCGGAGAGGCAGAACCACCATCGAAGAGA
GCTGCAGTCGGCCGTTCGGAATACGCTGCAGTTGCTGCTGAGAATACTCC
GAAGAAAGACAATGTTCTCGATGTCAAGGCGGACGCTCCGTCCGGCGATT
CGCCGGCCATGCAGTTCTCTTGGCTCAATTCCTCTTCCACACAGCCTACT
AGTAGTCCTCAGTGA
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