Gvermi12270.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12270.t1
Unique NameGvermi12270.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length735
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4065653..4068124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709109.1
Preferred nameSPATA20
PFAMsGlcNAc_2-epim,Thioredox_DsbH
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
GOsGO:0000003,GO:0007276,GO:0007283,GO:0008150,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0044703,GO:0048232,GO:0048609,GO:0051704
Evalue1.74e-134
EggNOG OGsCOG1331@1|root,KOG2244@2759|Eukaryota
EC2.7.4.9
Descriptionspermatogenesis
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12270Gvermi12270Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4065653..4068124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12270.t1Gvermi12270.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4065653..4068124 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12270.t1.stop1Gvermi12270.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4065653..4065655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12270.t1.CDS1Gvermi12270.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4065653..4066605 -
Gvermi12270.t1.CDS2Gvermi12270.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4066873..4068124 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12270.t1.exon1Gvermi12270.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4065653..4066605 -
Gvermi12270.t1.exon2Gvermi12270.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4066873..4068124 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12270.t1.intron1Gvermi12270.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4066606..4066872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12270.t1.start1Gvermi12270.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4068122..4068124 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12270.t1 ID=Gvermi12270.t1|Name=Gvermi12270.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=735bp
MHRLEFYQLCDSNNLAFTALLPIDLKAQTTALLPTAFFNTRLPLQRQRLG
FHPIFERSNGCARYRFDVSNTFQSTNNATSRPGLSSEPAQPLRALRTVPT
TAEKPNYLISETSRYLADSAYEAVRWYPWGHQAFVTARNEQKPILLSSGF
LSCHLCDVMSEHFCDPEIAQILNKKFICIKVDREERPDVDSVYNSFVQAV
TGRTGWPLTCFLTPSLVPFVGTTYLPKDRLLNAVKSIADRWETNRDKIEA
DGSKVVSALRDLFSRRKLTSRQDVSIETILQAFNAAVATFDVENGGFGSA
PKFPRPSVLEFLLSVHQSDQLDDRIRLEALDMVVDSLQHIAAGGIHDHIG
GGFFRYSMDASWQVPHFEKILSDQAQLAMAFLHAYLLSGDQKLKAVVCKT
LDFVMREMWNEDTGAIYNEAVRSILDKSLAKVLEERERRPRPPIDDLSVT
SWMSLAISAFIRAGRCLNRPDYITVAEKAACLIRRTMVIRVDDVSDAIFL
ARGYRGKRGIIQALAEDYAYGTQAFLDCFEVTGNLDYLHFARQLQNALDA
RFWENDGYCSAVKGDKDILLRRVEDYDGAEPAASSVAVLNLVRMGSLFGD
DKLLSRAKCILNSFKATFETSPLAMPMLLASAYPLFREKPQKVVVVGSNE
EALNLLDVYWSQGLPRHISVLRLPLKKCSTKLLQYFSPDRRVMMQDSTTT
AAFVYTGDVCLEPTNDPDIFLCDLRQLVENREET*
back to top

spliced messenger RNA

>Gvermi12270.t1 ID=Gvermi12270.t1|Name=Gvermi12270.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2205bp|location=Sequence derived from alignment at ScGOVlb_3404:4065653..4068124- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCCTTGAATTCTACCAGTTGTGCGACTCGAATAATCTTGCTTT
TACGGCCCTACTTCCTATCGACCTTAAGGCCCAAACTACAGCTTTGCTCC
CAACTGCATTCTTCAATACGCGACTTCCACTGCAGCGCCAAAGATTGGGC
TTCCATCCTATATTTGAGCGAAGCAATGGGTGTGCCCGTTATCGATTTGA
CGTCTCCAACACATTCCAAAGCACCAATAATGCTACAAGTCGCCCAGGCT
TGTCAAGCGAGCCCGCACAGCCTCTTCGTGCTCTTCGAACCGTTCCAACA
ACTGCAGAGAAGCCAAATTATCTCATATCCGAAACCAGTCGTTACCTCGC
TGATTCTGCTTATGAAGCGGTGCGTTGGTATCCATGGGGTCATCAAGCTT
TTGTGACAGCTCGAAACGAGCAGAAACCAATTCTTTTATCTTCTGGCTTT
CTAAGCTGTCATTTGTGCGACGTCATGTCTGAGCACTTTTGCGATCCGGA
AATTGCACAGATTCTAAACAAGAAATTCATATGTATCAAAGTTGATCGCG
AAGAGCGCCCTGATGTCGATTCAGTATATAATTCCTTCGTGCAAGCTGTG
ACAGGTAGAACTGGTTGGCCTCTAACATGCTTCTTAACCCCAAGTCTTGT
TCCTTTCGTCGGCACCACATATCTTCCTAAAGACAGACTTTTGAACGCTG
TGAAGTCCATTGCTGATCGGTGGGAAACGAATCGTGATAAGATAGAAGCT
GATGGAAGCAAAGTTGTCAGTGCGCTGCGTGACTTATTTTCACGCAGGAA
ATTAACATCGCGACAAGATGTCAGCATTGAAACAATTCTGCAAGCTTTCA
ATGCAGCTGTTGCTACTTTTGACGTCGAAAACGGTGGCTTCGGCTCTGCA
CCCAAATTTCCGCGTCCGTCCGTACTCGAATTCCTGCTTTCTGTTCATCA
GTCAGACCAGCTTGATGACAGAATTCGATTGGAAGCATTAGATATGGTTG
TGGATAGTCTGCAACATATCGCCGCAGGCGGAATACATGATCATATTGGT
GGGGGGTTCTTTAGATACTCCATGGATGCTTCATGGCAAGTACCGCACTT
TGAAAAGATTCTCTCAGACCAAGCTCAGCTTGCGATGGCTTTCTTACATG
CCTATTTACTTTCTGGTGATCAAAAGCTGAAGGCTGTAGTGTGCAAAACT
CTGGATTTTGTAATGCGAGAAATGTGGAACGAAGACACTGGTGCGATATA
CAACGAGGCCGTCCGTAGCATTTTGGACAAATCATTAGCAAAAGTTCTTG
AAGAACGAGAAAGAAGACCCCGGCCACCAATAGATGATCTGTCTGTGACC
TCATGGATGTCTCTTGCAATATCCGCGTTCATAAGAGCAGGGAGATGTCT
CAACAGACCAGACTACATTACCGTGGCAGAGAAAGCAGCTTGTTTGATAA
GACGGACGATGGTAATCCGAGTTGATGATGTTTCTGACGCTATCTTCTTG
GCTCGTGGATACCGCGGAAAGCGAGGAATAATACAAGCACTTGCAGAAGA
TTACGCTTACGGTACACAAGCATTCCTCGATTGCTTCGAAGTCACAGGAA
ATTTAGACTACCTACATTTTGCGCGCCAGTTACAAAACGCCTTGGATGCT
CGGTTTTGGGAGAATGATGGGTACTGTAGTGCGGTAAAGGGTGACAAGGA
CATCCTTTTGAGACGGGTTGAGGACTATGATGGCGCTGAGCCGGCAGCAT
CTAGCGTTGCTGTTCTAAATCTAGTCCGTATGGGTTCCTTGTTTGGAGAT
GACAAGCTTTTGAGTCGTGCGAAATGCATACTGAATTCCTTCAAAGCTAC
TTTTGAGACCAGCCCTCTGGCCATGCCAATGCTCCTCGCATCAGCTTACC
CTCTTTTCCGAGAAAAGCCACAAAAAGTTGTTGTGGTTGGAAGTAACGAA
GAAGCTTTGAATTTATTGGATGTATACTGGTCACAAGGCCTACCGCGCCA
TATCAGTGTGCTGAGGCTGCCATTAAAAAAATGTTCGACGAAGCTGTTGC
AATATTTCTCCCCTGATCGTCGAGTTATGATGCAAGATTCAACAACCACT
GCGGCTTTTGTGTACACGGGTGATGTTTGTTTAGAACCGACGAATGACCC
TGATATATTCCTTTGCGATCTTCGACAACTTGTGGAGAACCGTGAGGAAA
CTTGA
back to top

protein sequence of Gvermi12270.t1

>Gvermi12270.t1 ID=Gvermi12270.t1|Name=Gvermi12270.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=735bp
MHRLEFYQLCDSNNLAFTALLPIDLKAQTTALLPTAFFNTRLPLQRQRLG
FHPIFERSNGCARYRFDVSNTFQSTNNATSRPGLSSEPAQPLRALRTVPT
TAEKPNYLISETSRYLADSAYEAVRWYPWGHQAFVTARNEQKPILLSSGF
LSCHLCDVMSEHFCDPEIAQILNKKFICIKVDREERPDVDSVYNSFVQAV
TGRTGWPLTCFLTPSLVPFVGTTYLPKDRLLNAVKSIADRWETNRDKIEA
DGSKVVSALRDLFSRRKLTSRQDVSIETILQAFNAAVATFDVENGGFGSA
PKFPRPSVLEFLLSVHQSDQLDDRIRLEALDMVVDSLQHIAAGGIHDHIG
GGFFRYSMDASWQVPHFEKILSDQAQLAMAFLHAYLLSGDQKLKAVVCKT
LDFVMREMWNEDTGAIYNEAVRSILDKSLAKVLEERERRPRPPIDDLSVT
SWMSLAISAFIRAGRCLNRPDYITVAEKAACLIRRTMVIRVDDVSDAIFL
ARGYRGKRGIIQALAEDYAYGTQAFLDCFEVTGNLDYLHFARQLQNALDA
RFWENDGYCSAVKGDKDILLRRVEDYDGAEPAASSVAVLNLVRMGSLFGD
DKLLSRAKCILNSFKATFETSPLAMPMLLASAYPLFREKPQKVVVVGSNE
EALNLLDVYWSQGLPRHISVLRLPLKKCSTKLLQYFSPDRRVMMQDSTTT
AAFVYTGDVCLEPTNDPDIFLCDLRQLVENREET*
back to top

mRNA from alignment at ScGOVlb_3404:4065653..4068124-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12270.t1 ID=Gvermi12270.t1|Name=Gvermi12270.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2472bp|location=Sequence derived from alignment at ScGOVlb_3404:4065653..4068124- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGCCTTGAATTCTACCAGTTGTGCGACTCGAATAATCTTGCTTT
TACGGCCCTACTTCCTATCGACCTTAAGGCCCAAACTACAGCTTTGCTCC
CAACTGCATTCTTCAATACGCGACTTCCACTGCAGCGCCAAAGATTGGGC
TTCCATCCTATATTTGAGCGAAGCAATGGGTGTGCCCGTTATCGATTTGA
CGTCTCCAACACATTCCAAAGCACCAATAATGCTACAAGTCGCCCAGGCT
TGTCAAGCGAGCCCGCACAGCCTCTTCGTGCTCTTCGAACCGTTCCAACA
ACTGCAGAGAAGCCAAATTATCTCATATCCGAAACCAGTCGTTACCTCGC
TGATTCTGCTTATGAAGCGGTGCGTTGGTATCCATGGGGTCATCAAGCTT
TTGTGACAGCTCGAAACGAGCAGAAACCAATTCTTTTATCTTCTGGCTTT
CTAAGCTGTCATTTGTGCGACGTCATGTCTGAGCACTTTTGCGATCCGGA
AATTGCACAGATTCTAAACAAGAAATTCATATGTATCAAAGTTGATCGCG
AAGAGCGCCCTGATGTCGATTCAGTATATAATTCCTTCGTGCAAGCTGTG
ACAGGTAGAACTGGTTGGCCTCTAACATGCTTCTTAACCCCAAGTCTTGT
TCCTTTCGTCGGCACCACATATCTTCCTAAAGACAGACTTTTGAACGCTG
TGAAGTCCATTGCTGATCGGTGGGAAACGAATCGTGATAAGATAGAAGCT
GATGGAAGCAAAGTTGTCAGTGCGCTGCGTGACTTATTTTCACGCAGGAA
ATTAACATCGCGACAAGATGTCAGCATTGAAACAATTCTGCAAGCTTTCA
ATGCAGCTGTTGCTACTTTTGACGTCGAAAACGGTGGCTTCGGCTCTGCA
CCCAAATTTCCGCGTCCGTCCGTACTCGAATTCCTGCTTTCTGTTCATCA
GTCAGACCAGCTTGATGACAGAATTCGATTGGAAGCATTAGATATGGTTG
TGGATAGTCTGCAACATATCGCCGCAGGCGGAATACATGATCATATTGGT
GGGGGGTTCTTTAGATACTCCATGGATGCTTCATGGCAAGTACCGCACTT
TGAAAAGATTCTCTCAGACCAAGCTCAGCTTGCGATGGCTTTCTTACATG
CCTATTTACTTTCTGGTGATCAAAAGCTGAAGGCTGTAGTGTGCAAAACT
CTGGATTTTGTAATGCGAGAAATGTGGAACGAAGACACTGGTGCGATATA
CAGTGCTATTCACGCTGACTCTAAACAGTTGTATGACATCACTAACACAG
TCGCGGAAGGGGCATTTTACACGTTCAGTTCCTTTGAGTTGAAGCTGATT
CTTGGAGAGCCTGCTAGCACAGTATTCCAAAAACGTTATGGAGTCACCGC
AGCGGGAAACGTTTCAGATTCAGCCGTTGCAAACGCAGAGTATGGGGGAC
TAGAGGGACTCAATGTGCTGCGTATCAGCTCCCCCATATCGCAAATTGCG
CGCGAATTGAATCTTTCAGACGAGGCCGTCCGTAGCATTTTGGACAAATC
ATTAGCAAAAGTTCTTGAAGAACGAGAAAGAAGACCCCGGCCACCAATAG
ATGATCTGTCTGTGACCTCATGGATGTCTCTTGCAATATCCGCGTTCATA
AGAGCAGGGAGATGTCTCAACAGACCAGACTACATTACCGTGGCAGAGAA
AGCAGCTTGTTTGATAAGACGGACGATGGTAATCCGAGTTGATGATGTTT
CTGACGCTATCTTCTTGGCTCGTGGATACCGCGGAAAGCGAGGAATAATA
CAAGCACTTGCAGAAGATTACGCTTACGGTACACAAGCATTCCTCGATTG
CTTCGAAGTCACAGGAAATTTAGACTACCTACATTTTGCGCGCCAGTTAC
AAAACGCCTTGGATGCTCGGTTTTGGGAGAATGATGGGTACTGTAGTGCG
GTAAAGGGTGACAAGGACATCCTTTTGAGACGGGTTGAGGACTATGATGG
CGCTGAGCCGGCAGCATCTAGCGTTGCTGTTCTAAATCTAGTCCGTATGG
GTTCCTTGTTTGGAGATGACAAGCTTTTGAGTCGTGCGAAATGCATACTG
AATTCCTTCAAAGCTACTTTTGAGACCAGCCCTCTGGCCATGCCAATGCT
CCTCGCATCAGCTTACCCTCTTTTCCGAGAAAAGCCACAAAAAGTTGTTG
TGGTTGGAAGTAACGAAGAAGCTTTGAATTTATTGGATGTATACTGGTCA
CAAGGCCTACCGCGCCATATCAGTGTGCTGAGGCTGCCATTAAAAAAATG
TTCGACGAAGCTGTTGCAATATTTCTCCCCTGATCGTCGAGTTATGATGC
AAGATTCAACAACCACTGCGGCTTTTGTGTACACGGGTGATGTTTGTTTA
GAACCGACGAATGACCCTGATATATTCCTTTGCGATCTTCGACAACTTGT
GGAGAACCGTGAGGAAACTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4065653..4068124-

>Gvermi12270.t1 ID=Gvermi12270.t1|Name=Gvermi12270.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2205bp|location=Sequence derived from alignment at ScGOVlb_3404:4065653..4068124- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGCCTTGAATTCTACCAGTTGTGCGACTCGAATAATCTTGCTTT
TACGGCCCTACTTCCTATCGACCTTAAGGCCCAAACTACAGCTTTGCTCC
CAACTGCATTCTTCAATACGCGACTTCCACTGCAGCGCCAAAGATTGGGC
TTCCATCCTATATTTGAGCGAAGCAATGGGTGTGCCCGTTATCGATTTGA
CGTCTCCAACACATTCCAAAGCACCAATAATGCTACAAGTCGCCCAGGCT
TGTCAAGCGAGCCCGCACAGCCTCTTCGTGCTCTTCGAACCGTTCCAACA
ACTGCAGAGAAGCCAAATTATCTCATATCCGAAACCAGTCGTTACCTCGC
TGATTCTGCTTATGAAGCGGTGCGTTGGTATCCATGGGGTCATCAAGCTT
TTGTGACAGCTCGAAACGAGCAGAAACCAATTCTTTTATCTTCTGGCTTT
CTAAGCTGTCATTTGTGCGACGTCATGTCTGAGCACTTTTGCGATCCGGA
AATTGCACAGATTCTAAACAAGAAATTCATATGTATCAAAGTTGATCGCG
AAGAGCGCCCTGATGTCGATTCAGTATATAATTCCTTCGTGCAAGCTGTG
ACAGGTAGAACTGGTTGGCCTCTAACATGCTTCTTAACCCCAAGTCTTGT
TCCTTTCGTCGGCACCACATATCTTCCTAAAGACAGACTTTTGAACGCTG
TGAAGTCCATTGCTGATCGGTGGGAAACGAATCGTGATAAGATAGAAGCT
GATGGAAGCAAAGTTGTCAGTGCGCTGCGTGACTTATTTTCACGCAGGAA
ATTAACATCGCGACAAGATGTCAGCATTGAAACAATTCTGCAAGCTTTCA
ATGCAGCTGTTGCTACTTTTGACGTCGAAAACGGTGGCTTCGGCTCTGCA
CCCAAATTTCCGCGTCCGTCCGTACTCGAATTCCTGCTTTCTGTTCATCA
GTCAGACCAGCTTGATGACAGAATTCGATTGGAAGCATTAGATATGGTTG
TGGATAGTCTGCAACATATCGCCGCAGGCGGAATACATGATCATATTGGT
GGGGGGTTCTTTAGATACTCCATGGATGCTTCATGGCAAGTACCGCACTT
TGAAAAGATTCTCTCAGACCAAGCTCAGCTTGCGATGGCTTTCTTACATG
CCTATTTACTTTCTGGTGATCAAAAGCTGAAGGCTGTAGTGTGCAAAACT
CTGGATTTTGTAATGCGAGAAATGTGGAACGAAGACACTGGTGCGATATA
CAACGAGGCCGTCCGTAGCATTTTGGACAAATCATTAGCAAAAGTTCTTG
AAGAACGAGAAAGAAGACCCCGGCCACCAATAGATGATCTGTCTGTGACC
TCATGGATGTCTCTTGCAATATCCGCGTTCATAAGAGCAGGGAGATGTCT
CAACAGACCAGACTACATTACCGTGGCAGAGAAAGCAGCTTGTTTGATAA
GACGGACGATGGTAATCCGAGTTGATGATGTTTCTGACGCTATCTTCTTG
GCTCGTGGATACCGCGGAAAGCGAGGAATAATACAAGCACTTGCAGAAGA
TTACGCTTACGGTACACAAGCATTCCTCGATTGCTTCGAAGTCACAGGAA
ATTTAGACTACCTACATTTTGCGCGCCAGTTACAAAACGCCTTGGATGCT
CGGTTTTGGGAGAATGATGGGTACTGTAGTGCGGTAAAGGGTGACAAGGA
CATCCTTTTGAGACGGGTTGAGGACTATGATGGCGCTGAGCCGGCAGCAT
CTAGCGTTGCTGTTCTAAATCTAGTCCGTATGGGTTCCTTGTTTGGAGAT
GACAAGCTTTTGAGTCGTGCGAAATGCATACTGAATTCCTTCAAAGCTAC
TTTTGAGACCAGCCCTCTGGCCATGCCAATGCTCCTCGCATCAGCTTACC
CTCTTTTCCGAGAAAAGCCACAAAAAGTTGTTGTGGTTGGAAGTAACGAA
GAAGCTTTGAATTTATTGGATGTATACTGGTCACAAGGCCTACCGCGCCA
TATCAGTGTGCTGAGGCTGCCATTAAAAAAATGTTCGACGAAGCTGTTGC
AATATTTCTCCCCTGATCGTCGAGTTATGATGCAAGATTCAACAACCACT
GCGGCTTTTGTGTACACGGGTGATGTTTGTTTAGAACCGACGAATGACCC
TGATATATTCCTTTGCGATCTTCGACAACTTGTGGAGAACCGTGAGGAAA
CTTGA
back to top