Gvermi12461.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12461.t1
Unique Name	Gvermi12461.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4929888..4930973 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1116369.KB890024_gene3486
Preferred name	galM
PFAMs	Aldose_epim
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00563
KEGG ko	ko:K01785
KEGG Reaction	R01602,R10619
KEGG Pathway	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130
KEGG Module	M00632
GOs	GO:0003674,GO:0003824,GO:0004034,GO:0005975,GO:0005996,GO:0006006,GO:0006012,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019318,GO:0019320,GO:0019388,GO:0033499,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575
Evalue	1.64e-48
EggNOG OGs	COG2017@1\|root,COG2017@2\|Bacteria,1MVMN@1224\|Proteobacteria,2TTJ7@28211\|Alphaproteobacteria,43GTW@69277\|Phyllobacteriaceae
EC	5.1.3.3
Description	Converts alpha-aldose to the beta-anomer
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12461	Gvermi12461	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4929888..4930973 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12461.t1.start1	Gvermi12461.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4929888..4929890 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12461.t1.CDS1	Gvermi12461.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4929888..4930973 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12461.t1.exon1	Gvermi12461.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4929888..4930973 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12461.t1.stop1	Gvermi12461.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4930971..4930973 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12461.t1	Gvermi12461.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4929888..4930973 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4929888..4930973+
coding sequence from alignment at ScGOVlb_3404:4929888..4930973+

mRNA sequence

>Gvermi12461.t1 ID=Gvermi12461.t1|Name=Gvermi12461.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=362bp
MRPNDPNRTPPRTTHMEGRIRNGDYVKTIHIRSESGAEASVLTRGARLLD
LRFSTGPNRLITYNDLSGVEDDSAFVNVVIGRVANRTRNGKLLRYPEMNR
KAHLELNDQGRHHIHGGSNSWDKRLFWVRQQSESMVELSILSPDGDQGYP
GSVELTVRYELKGDVQLDVTLTTKNIGREPTPCNLTLHPYFDLSGEGGRI
EDSVLSYTMEASNCDQYLILDGDNVPTGDIATVEGTRFDFTRCRTIGDGS
ATMKGYDNFWIARTSPDEKDEVRTMATFVLPAQNSTQGVQMEVLSNQQGF
QFYTANGFSGCGNEMFAKHGSIAVEPSNFIDAANHDSFPSVALGPNEIRQ
QRISYKLRMLE*

spliced messenger RNA

>Gvermi12461.t1 ID=Gvermi12461.t1|Name=Gvermi12461.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_3404:4929888..4930973+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACCCAATGACCCGAACCGAACCCCGCCTAGAACAACGCACATGGA
AGGAAGAATAAGGAATGGAGACTATGTGAAGACTATCCATATTAGGTCAG
AAAGCGGAGCTGAAGCATCTGTTCTCACCAGAGGCGCACGACTGTTGGAT
CTACGTTTTTCGACCGGGCCCAATCGACTCATAACATACAACGATTTGTC
AGGAGTTGAAGACGACTCGGCTTTTGTTAATGTCGTCATCGGACGAGTTG
CAAATCGCACGCGAAATGGAAAACTACTTCGTTACCCAGAAATGAACCGT
AAAGCTCATTTGGAACTGAACGATCAGGGACGCCATCACATTCACGGTGG
GTCCAATTCGTGGGATAAAAGACTATTTTGGGTACGGCAGCAAAGTGAGT
CTATGGTTGAGTTGAGCATTTTGTCTCCCGATGGCGATCAAGGTTATCCT
GGAAGCGTTGAATTGACCGTCCGATATGAACTTAAAGGTGATGTGCAGCT
TGATGTGACATTGACCACGAAAAACATTGGGAGAGAGCCAACGCCCTGCA
ACTTGACGCTGCACCCTTATTTTGATCTCAGCGGAGAAGGTGGCAGAATA
GAAGATTCTGTGCTTTCTTATACAATGGAGGCGAGTAATTGTGACCAATA
TCTCATTCTGGATGGCGACAATGTTCCCACTGGTGACATCGCTACTGTAG
AAGGCACTCGTTTTGATTTTACTAGATGTCGAACAATTGGTGATGGATCA
GCAACGATGAAAGGATATGATAATTTCTGGATCGCTCGAACAAGTCCTGA
TGAAAAGGATGAGGTGCGAACTATGGCAACTTTTGTGCTTCCAGCCCAAA
ACAGCACCCAAGGAGTTCAGATGGAAGTGCTAAGCAATCAGCAAGGATTT
CAGTTTTATACAGCTAATGGATTTAGCGGGTGCGGAAATGAGATGTTCGC
CAAGCACGGAAGTATTGCGGTGGAGCCCAGCAACTTTATTGATGCCGCAA
ATCACGATAGTTTCCCTTCCGTTGCACTTGGGCCAAATGAAATCAGGCAG
CAGCGAATTTCTTACAAGTTGAGAATGTTAGAGTAA

protein sequence of Gvermi12461.t1

>Gvermi12461.t1 ID=Gvermi12461.t1|Name=Gvermi12461.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=362bp
MRPNDPNRTPPRTTHMEGRIRNGDYVKTIHIRSESGAEASVLTRGARLLD
LRFSTGPNRLITYNDLSGVEDDSAFVNVVIGRVANRTRNGKLLRYPEMNR
KAHLELNDQGRHHIHGGSNSWDKRLFWVRQQSESMVELSILSPDGDQGYP
GSVELTVRYELKGDVQLDVTLTTKNIGREPTPCNLTLHPYFDLSGEGGRI
EDSVLSYTMEASNCDQYLILDGDNVPTGDIATVEGTRFDFTRCRTIGDGS
ATMKGYDNFWIARTSPDEKDEVRTMATFVLPAQNSTQGVQMEVLSNQQGF
QFYTANGFSGCGNEMFAKHGSIAVEPSNFIDAANHDSFPSVALGPNEIRQ
QRISYKLRMLE*

mRNA from alignment at ScGOVlb_3404:4929888..4930973+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12461.t1 ID=Gvermi12461.t1|Name=Gvermi12461.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_3404:4929888..4930973+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACCCAATGACCCGAACCGAACCCCGCCTAGAACAACGCACATGGA
AGGAAGAATAAGGAATGGAGACTATGTGAAGACTATCCATATTAGGTCAG
AAAGCGGAGCTGAAGCATCTGTTCTCACCAGAGGCGCACGACTGTTGGAT
CTACGTTTTTCGACCGGGCCCAATCGACTCATAACATACAACGATTTGTC
AGGAGTTGAAGACGACTCGGCTTTTGTTAATGTCGTCATCGGACGAGTTG
CAAATCGCACGCGAAATGGAAAACTACTTCGTTACCCAGAAATGAACCGT
AAAGCTCATTTGGAACTGAACGATCAGGGACGCCATCACATTCACGGTGG
GTCCAATTCGTGGGATAAAAGACTATTTTGGGTACGGCAGCAAAGTGAGT
CTATGGTTGAGTTGAGCATTTTGTCTCCCGATGGCGATCAAGGTTATCCT
GGAAGCGTTGAATTGACCGTCCGATATGAACTTAAAGGTGATGTGCAGCT
TGATGTGACATTGACCACGAAAAACATTGGGAGAGAGCCAACGCCCTGCA
ACTTGACGCTGCACCCTTATTTTGATCTCAGCGGAGAAGGTGGCAGAATA
GAAGATTCTGTGCTTTCTTATACAATGGAGGCGAGTAATTGTGACCAATA
TCTCATTCTGGATGGCGACAATGTTCCCACTGGTGACATCGCTACTGTAG
AAGGCACTCGTTTTGATTTTACTAGATGTCGAACAATTGGTGATGGATCA
GCAACGATGAAAGGATATGATAATTTCTGGATCGCTCGAACAAGTCCTGA
TGAAAAGGATGAGGTGCGAACTATGGCAACTTTTGTGCTTCCAGCCCAAA
ACAGCACCCAAGGAGTTCAGATGGAAGTGCTAAGCAATCAGCAAGGATTT
CAGTTTTATACAGCTAATGGATTTAGCGGGTGCGGAAATGAGATGTTCGC
CAAGCACGGAAGTATTGCGGTGGAGCCCAGCAACTTTATTGATGCCGCAA
ATCACGATAGTTTCCCTTCCGTTGCACTTGGGCCAAATGAAATCAGGCAG
CAGCGAATTTCTTACAAGTTGAGAATGTTAGAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4929888..4930973+

>Gvermi12461.t1 ID=Gvermi12461.t1|Name=Gvermi12461.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1086bp|location=Sequence derived from alignment at ScGOVlb_3404:4929888..4930973+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACCCAATGACCCGAACCGAACCCCGCCTAGAACAACGCACATGGA
AGGAAGAATAAGGAATGGAGACTATGTGAAGACTATCCATATTAGGTCAG
AAAGCGGAGCTGAAGCATCTGTTCTCACCAGAGGCGCACGACTGTTGGAT
CTACGTTTTTCGACCGGGCCCAATCGACTCATAACATACAACGATTTGTC
AGGAGTTGAAGACGACTCGGCTTTTGTTAATGTCGTCATCGGACGAGTTG
CAAATCGCACGCGAAATGGAAAACTACTTCGTTACCCAGAAATGAACCGT
AAAGCTCATTTGGAACTGAACGATCAGGGACGCCATCACATTCACGGTGG
GTCCAATTCGTGGGATAAAAGACTATTTTGGGTACGGCAGCAAAGTGAGT
CTATGGTTGAGTTGAGCATTTTGTCTCCCGATGGCGATCAAGGTTATCCT
GGAAGCGTTGAATTGACCGTCCGATATGAACTTAAAGGTGATGTGCAGCT
TGATGTGACATTGACCACGAAAAACATTGGGAGAGAGCCAACGCCCTGCA
ACTTGACGCTGCACCCTTATTTTGATCTCAGCGGAGAAGGTGGCAGAATA
GAAGATTCTGTGCTTTCTTATACAATGGAGGCGAGTAATTGTGACCAATA
TCTCATTCTGGATGGCGACAATGTTCCCACTGGTGACATCGCTACTGTAG
AAGGCACTCGTTTTGATTTTACTAGATGTCGAACAATTGGTGATGGATCA
GCAACGATGAAAGGATATGATAATTTCTGGATCGCTCGAACAAGTCCTGA
TGAAAAGGATGAGGTGCGAACTATGGCAACTTTTGTGCTTCCAGCCCAAA
ACAGCACCCAAGGAGTTCAGATGGAAGTGCTAAGCAATCAGCAAGGATTT
CAGTTTTATACAGCTAATGGATTTAGCGGGTGCGGAAATGAGATGTTCGC
CAAGCACGGAAGTATTGCGGTGGAGCCCAGCAACTTTATTGATGCCGCAA
ATCACGATAGTTTCCCTTCCGTTGCACTTGGGCCAAATGAAATCAGGCAG
CAGCGAATTTCTTACAAGTTGAGAATGTTAGAGTAA