Gvermi12269.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12269.t1
Unique NameGvermi12269.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4064009..4065448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF058CT
PFAMsCation_efflux
Max annot lvl2759|Eukaryota
KEGG koko:K14689
KEGG TC2.A.4.3.1,2.A.4.3.4
Evalue4.63e-73
EggNOG OGsCOG1230@1|root,KOG1482@2759|Eukaryota
Descriptionregulation of sequestering of zinc ion
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12269Gvermi12269Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4064009..4065448 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12269.t1.start1Gvermi12269.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4064009..4064011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12269.t1.CDS1Gvermi12269.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4064009..4065448 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12269.t1.exon1Gvermi12269.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4064009..4065448 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12269.t1.stop1Gvermi12269.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4065446..4065448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12269.t1Gvermi12269.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4064009..4065448 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12269.t1 ID=Gvermi12269.t1|Name=Gvermi12269.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp
MPLHNHFFAYDDQIDEHALAASSMTLSPSSSPHMVASAKETDALLPSSHS
AHKLSAKGEIRTLTYACALTTFFFIVELVGGHLAGSLAIMSDAAHLLSDL
AGFMISLIAVSVSHLPPNARMSFGFARAEVLGAFVSILFIWALTIVLVIF
AIERLLNPTPVNAPMMLGLGVIGLFVNITLGCVLGHGGHSHSHGGHDHDH
GHAHSHVDADFTPNHAHFDGDLETLPHDTDLENGYMSTVLRATRVSQPHD
DDQHSGSDHQDHEHEHPHEDSNSNTRENGTNGKSSIPSALKNLITFDHHD
KKSTNIRAAYLHVLGDALQNVGVITAAIVMIIKPSWAFFDPLCTLLFAAI
VMMTTRDLARETMMVLMEGTPGSVRLEDIHARLLELDGVSNVGDLHVWSI
TARRPALSVHLYQKNVAEGHDVVKDAQKMLARDFGILHATIQVNCETVEC
CDEVQPYEMDSSKNDCVSYRPQNGSKVTG*
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spliced messenger RNA

>Gvermi12269.t1 ID=Gvermi12269.t1|Name=Gvermi12269.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at ScGOVlb_3404:4064009..4065448+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTACATAACCACTTTTTTGCATACGACGACCAGATTGATGAGCA
CGCTCTAGCGGCTTCTTCTATGACCTTATCACCTTCATCATCCCCACATA
TGGTGGCGTCCGCCAAAGAAACGGACGCCCTGTTGCCCTCTTCCCACTCT
GCGCACAAGTTGAGTGCAAAAGGTGAAATTCGAACGCTCACATATGCATG
CGCCCTCACAACCTTCTTTTTCATTGTTGAGCTTGTGGGTGGCCATCTGG
CCGGGTCGCTTGCCATCATGTCCGATGCTGCCCACCTTCTCTCTGATCTT
GCTGGTTTCATGATTTCACTGATCGCCGTTTCTGTTTCTCATCTACCGCC
TAACGCACGAATGAGTTTTGGATTTGCCCGCGCAGAGGTTCTCGGTGCCT
TTGTATCTATTCTGTTCATTTGGGCTTTAACAATTGTCTTGGTCATTTTT
GCGATTGAAAGATTGTTAAATCCGACGCCTGTGAATGCCCCCATGATGCT
CGGATTAGGAGTCATTGGTCTTTTCGTCAATATCACGCTTGGTTGTGTCC
TTGGTCATGGCGGCCATTCACACAGTCACGGCGGtcatgatcatgatcat
gggcatgctcatagtcatgTGGATGCCGATTTTACACCAAACCACGCCCA
CTTCGACGGCGACCTCGAAACTCTTCCGCATGATACAGACTTGGAGAATG
GGTACATGTCAACTGTGTTGCGCGCCACCCGAGTTTCTCAACCTCATGAT
GATGATCAGCATTCAGGCAGCGATCATCAAGACCATGAACACGAACATCC
ACACGAAGATTCAAACAGCAATACGCGTGAGAATGGAACGAACGGGAAGT
CGTCCATCCCTTCTGCTTTGAAGAACTTGATTACATTTGACCATCACGAC
AAGAAGTCTACCAATATCAGAGCGGCCTATCTTCATGTTCTTGGTGATGC
ATTACAAAACGTCGGTGTAATAACAGCTGCGATTGTTATGATCATCAAGC
CATCGTGGGCTTTCTTTGACCCGCTGTGCACATTACTTTTTGCAGCCATT
GTGATGATGACCACTAGAGACCTTGCTAGAGAAACGATGATGGTGCTAAT
GGAGGGCACTCCAGGATCAGTGCGGCTTGAAGACATTCACGCAAGGCTTC
TGGAGCTTGACGGAGTCAGCAACGTAGGGGATTTACACGTTTGGTCTATA
ACAGCCAGACGCCCGGCGCTCAGCGTTCATTTATATCAAAAGAATGTAGC
TGAAGGTCACGACGTCGTAAAAGATGCACAGAAGATGCTCGCGAGGGATT
TTGGAATTCTTCACGCAACCATACAAGTTAACTGTGAGACAGTCGAATGC
TGTGACGAGGTTCAGCCTTATGAAATGGACTCTTCGAAAAACGATTGTGT
ATCCTaccgcccacagaacggctccaaagtgacagggtga
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protein sequence of Gvermi12269.t1

>Gvermi12269.t1 ID=Gvermi12269.t1|Name=Gvermi12269.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=480bp
MPLHNHFFAYDDQIDEHALAASSMTLSPSSSPHMVASAKETDALLPSSHS
AHKLSAKGEIRTLTYACALTTFFFIVELVGGHLAGSLAIMSDAAHLLSDL
AGFMISLIAVSVSHLPPNARMSFGFARAEVLGAFVSILFIWALTIVLVIF
AIERLLNPTPVNAPMMLGLGVIGLFVNITLGCVLGHGGHSHSHGGHDHDH
GHAHSHVDADFTPNHAHFDGDLETLPHDTDLENGYMSTVLRATRVSQPHD
DDQHSGSDHQDHEHEHPHEDSNSNTRENGTNGKSSIPSALKNLITFDHHD
KKSTNIRAAYLHVLGDALQNVGVITAAIVMIIKPSWAFFDPLCTLLFAAI
VMMTTRDLARETMMVLMEGTPGSVRLEDIHARLLELDGVSNVGDLHVWSI
TARRPALSVHLYQKNVAEGHDVVKDAQKMLARDFGILHATIQVNCETVEC
CDEVQPYEMDSSKNDCVSYRPQNGSKVTG*
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mRNA from alignment at ScGOVlb_3404:4064009..4065448+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12269.t1 ID=Gvermi12269.t1|Name=Gvermi12269.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at ScGOVlb_3404:4064009..4065448+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCTACATAACCACTTTTTTGCATACGACGACCAGATTGATGAGCA
CGCTCTAGCGGCTTCTTCTATGACCTTATCACCTTCATCATCCCCACATA
TGGTGGCGTCCGCCAAAGAAACGGACGCCCTGTTGCCCTCTTCCCACTCT
GCGCACAAGTTGAGTGCAAAAGGTGAAATTCGAACGCTCACATATGCATG
CGCCCTCACAACCTTCTTTTTCATTGTTGAGCTTGTGGGTGGCCATCTGG
CCGGGTCGCTTGCCATCATGTCCGATGCTGCCCACCTTCTCTCTGATCTT
GCTGGTTTCATGATTTCACTGATCGCCGTTTCTGTTTCTCATCTACCGCC
TAACGCACGAATGAGTTTTGGATTTGCCCGCGCAGAGGTTCTCGGTGCCT
TTGTATCTATTCTGTTCATTTGGGCTTTAACAATTGTCTTGGTCATTTTT
GCGATTGAAAGATTGTTAAATCCGACGCCTGTGAATGCCCCCATGATGCT
CGGATTAGGAGTCATTGGTCTTTTCGTCAATATCACGCTTGGTTGTGTCC
TTGGTCATGGCGGCCATTCACACAGTCACGGCGGtcatgatcatgatcat
gggcatgctcatagtcatgTGGATGCCGATTTTACACCAAACCACGCCCA
CTTCGACGGCGACCTCGAAACTCTTCCGCATGATACAGACTTGGAGAATG
GGTACATGTCAACTGTGTTGCGCGCCACCCGAGTTTCTCAACCTCATGAT
GATGATCAGCATTCAGGCAGCGATCATCAAGACCATGAACACGAACATCC
ACACGAAGATTCAAACAGCAATACGCGTGAGAATGGAACGAACGGGAAGT
CGTCCATCCCTTCTGCTTTGAAGAACTTGATTACATTTGACCATCACGAC
AAGAAGTCTACCAATATCAGAGCGGCCTATCTTCATGTTCTTGGTGATGC
ATTACAAAACGTCGGTGTAATAACAGCTGCGATTGTTATGATCATCAAGC
CATCGTGGGCTTTCTTTGACCCGCTGTGCACATTACTTTTTGCAGCCATT
GTGATGATGACCACTAGAGACCTTGCTAGAGAAACGATGATGGTGCTAAT
GGAGGGCACTCCAGGATCAGTGCGGCTTGAAGACATTCACGCAAGGCTTC
TGGAGCTTGACGGAGTCAGCAACGTAGGGGATTTACACGTTTGGTCTATA
ACAGCCAGACGCCCGGCGCTCAGCGTTCATTTATATCAAAAGAATGTAGC
TGAAGGTCACGACGTCGTAAAAGATGCACAGAAGATGCTCGCGAGGGATT
TTGGAATTCTTCACGCAACCATACAAGTTAACTGTGAGACAGTCGAATGC
TGTGACGAGGTTCAGCCTTATGAAATGGACTCTTCGAAAAACGATTGTGT
ATCCTaccgcccacagaacggctccaaagtgacagggtga
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4064009..4065448+

>Gvermi12269.t1 ID=Gvermi12269.t1|Name=Gvermi12269.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1440bp|location=Sequence derived from alignment at ScGOVlb_3404:4064009..4065448+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCTACATAACCACTTTTTTGCATACGACGACCAGATTGATGAGCA
CGCTCTAGCGGCTTCTTCTATGACCTTATCACCTTCATCATCCCCACATA
TGGTGGCGTCCGCCAAAGAAACGGACGCCCTGTTGCCCTCTTCCCACTCT
GCGCACAAGTTGAGTGCAAAAGGTGAAATTCGAACGCTCACATATGCATG
CGCCCTCACAACCTTCTTTTTCATTGTTGAGCTTGTGGGTGGCCATCTGG
CCGGGTCGCTTGCCATCATGTCCGATGCTGCCCACCTTCTCTCTGATCTT
GCTGGTTTCATGATTTCACTGATCGCCGTTTCTGTTTCTCATCTACCGCC
TAACGCACGAATGAGTTTTGGATTTGCCCGCGCAGAGGTTCTCGGTGCCT
TTGTATCTATTCTGTTCATTTGGGCTTTAACAATTGTCTTGGTCATTTTT
GCGATTGAAAGATTGTTAAATCCGACGCCTGTGAATGCCCCCATGATGCT
CGGATTAGGAGTCATTGGTCTTTTCGTCAATATCACGCTTGGTTGTGTCC
TTGGTCATGGCGGCCATTCACACAGTCACGGCGGtcatgatcatgatcat
gggcatgctcatagtcatgTGGATGCCGATTTTACACCAAACCACGCCCA
CTTCGACGGCGACCTCGAAACTCTTCCGCATGATACAGACTTGGAGAATG
GGTACATGTCAACTGTGTTGCGCGCCACCCGAGTTTCTCAACCTCATGAT
GATGATCAGCATTCAGGCAGCGATCATCAAGACCATGAACACGAACATCC
ACACGAAGATTCAAACAGCAATACGCGTGAGAATGGAACGAACGGGAAGT
CGTCCATCCCTTCTGCTTTGAAGAACTTGATTACATTTGACCATCACGAC
AAGAAGTCTACCAATATCAGAGCGGCCTATCTTCATGTTCTTGGTGATGC
ATTACAAAACGTCGGTGTAATAACAGCTGCGATTGTTATGATCATCAAGC
CATCGTGGGCTTTCTTTGACCCGCTGTGCACATTACTTTTTGCAGCCATT
GTGATGATGACCACTAGAGACCTTGCTAGAGAAACGATGATGGTGCTAAT
GGAGGGCACTCCAGGATCAGTGCGGCTTGAAGACATTCACGCAAGGCTTC
TGGAGCTTGACGGAGTCAGCAACGTAGGGGATTTACACGTTTGGTCTATA
ACAGCCAGACGCCCGGCGCTCAGCGTTCATTTATATCAAAAGAATGTAGC
TGAAGGTCACGACGTCGTAAAAGATGCACAGAAGATGCTCGCGAGGGATT
TTGGAATTCTTCACGCAACCATACAAGTTAACTGTGAGACAGTCGAATGC
TGTGACGAGGTTCAGCCTTATGAAATGGACTCTTCGAAAAACGATTGTGT
ATCCTaccgcccacagaacggctccaaagtgacagggtga
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