Gvermi12453.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12453.t1
Unique NameGvermi12453.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4898641..4899141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog697282.Mettu_2332
PFAMsCupin_5
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K09705
Evalue1.37e-45
EggNOG OGsCOG3542@1|root,COG3542@2|Bacteria,1RHBE@1224|Proteobacteria,1S7ED@1236|Gammaproteobacteria
DescriptionCupin superfamily (DUF985)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12453Gvermi12453Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4898641..4899141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12453.t1.stop1Gvermi12453.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4898641..4898643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12453.t1.CDS1Gvermi12453.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4898641..4899141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12453.t1.exon1Gvermi12453.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4898641..4899141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12453.t1.start1Gvermi12453.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4899139..4899141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12453.t1Gvermi12453.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4898641..4899141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12453.t1 ID=Gvermi12453.t1|Name=Gvermi12453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=167bp
MTQQIGKSELIRTLQLQHHVEGGAFRRTFASDITFQRDKDKKERRVMTSI
FYMITDDHRVSFMIENVSDIMRYFHMGSPVTIYIVDTEGNLTKTVMGTDV
KNGQVLQLLCKGGCWAGAVLEQGEYGLLSEAVAPGFEYEDMRMIRRKDVQ
QKFPNLVERIAHLLIE*
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spliced messenger RNA

>Gvermi12453.t1 ID=Gvermi12453.t1|Name=Gvermi12453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:4898641..4899141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCAACAAATTGGCAAAAGCGAGTTGATTCGCACGCTTCAGCTGCA
GCATCACGTTGAAGGCGGCGCCTTTCGTCGAACTTTTGCTTCCGATATAA
CGTTTCAACGCGACAAAGACAAAAAGGAACGGCGTGTAATGACATCAATC
TTCTACATGATAACCGACGATCACAGAGTGTCGTTCATGATTGAGAATGT
CTCAGACATAATGCGATACTTTCACATGGGCTCTCCAGTCACGATTTATA
TTGTGGACACGGAAGGAAACTTAACAAAGACCGTAATGGGAACCGATGTG
AAGAATGGACAGGTCCTCCAATTGCTCTGTAAAGGAGGTTGCTGGGCGGG
GGCCGTTCTTGAACAAGGAGAGTACGGTTTGTTATCAGAGGCTGTGGCGC
CGGGTTTTGAGTACGAGGACATGAGAATGATTCGTCGCAAAGATGTTCAA
CAAAAATTCCCGAATCTGGTTGAGCGCATTGCACACCTGTTGATCGAGTG
A
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protein sequence of Gvermi12453.t1

>Gvermi12453.t1 ID=Gvermi12453.t1|Name=Gvermi12453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=167bp
MTQQIGKSELIRTLQLQHHVEGGAFRRTFASDITFQRDKDKKERRVMTSI
FYMITDDHRVSFMIENVSDIMRYFHMGSPVTIYIVDTEGNLTKTVMGTDV
KNGQVLQLLCKGGCWAGAVLEQGEYGLLSEAVAPGFEYEDMRMIRRKDVQ
QKFPNLVERIAHLLIE*
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mRNA from alignment at ScGOVlb_3404:4898641..4899141-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12453.t1 ID=Gvermi12453.t1|Name=Gvermi12453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:4898641..4899141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCCAACAAATTGGCAAAAGCGAGTTGATTCGCACGCTTCAGCTGCA
GCATCACGTTGAAGGCGGCGCCTTTCGTCGAACTTTTGCTTCCGATATAA
CGTTTCAACGCGACAAAGACAAAAAGGAACGGCGTGTAATGACATCAATC
TTCTACATGATAACCGACGATCACAGAGTGTCGTTCATGATTGAGAATGT
CTCAGACATAATGCGATACTTTCACATGGGCTCTCCAGTCACGATTTATA
TTGTGGACACGGAAGGAAACTTAACAAAGACCGTAATGGGAACCGATGTG
AAGAATGGACAGGTCCTCCAATTGCTCTGTAAAGGAGGTTGCTGGGCGGG
GGCCGTTCTTGAACAAGGAGAGTACGGTTTGTTATCAGAGGCTGTGGCGC
CGGGTTTTGAGTACGAGGACATGAGAATGATTCGTCGCAAAGATGTTCAA
CAAAAATTCCCGAATCTGGTTGAGCGCATTGCACACCTGTTGATCGAGTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4898641..4899141-

>Gvermi12453.t1 ID=Gvermi12453.t1|Name=Gvermi12453.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:4898641..4899141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCCAACAAATTGGCAAAAGCGAGTTGATTCGCACGCTTCAGCTGCA
GCATCACGTTGAAGGCGGCGCCTTTCGTCGAACTTTTGCTTCCGATATAA
CGTTTCAACGCGACAAAGACAAAAAGGAACGGCGTGTAATGACATCAATC
TTCTACATGATAACCGACGATCACAGAGTGTCGTTCATGATTGAGAATGT
CTCAGACATAATGCGATACTTTCACATGGGCTCTCCAGTCACGATTTATA
TTGTGGACACGGAAGGAAACTTAACAAAGACCGTAATGGGAACCGATGTG
AAGAATGGACAGGTCCTCCAATTGCTCTGTAAAGGAGGTTGCTGGGCGGG
GGCCGTTCTTGAACAAGGAGAGTACGGTTTGTTATCAGAGGCTGTGGCGC
CGGGTTTTGAGTACGAGGACATGAGAATGATTCGTCGCAAAGATGTTCAA
CAAAAATTCCCGAATCTGGTTGAGCGCATTGCACACCTGTTGATCGAGTG
A
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