Gvermi12290.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12290.t1
Unique NameGvermi12290.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4105530..4106717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9646.ENSAMEP00000002759
Preferred nameRCL1
PFAMsRTC,RTC_insert
Max annot lvl33208|Metazoa
KEGG koko:K11108
KEGG Pathwayko03008,map03008
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0030490,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360
Evalue1.57e-91
EggNOG OGsCOG0430@1|root,KOG3980@2759|Eukaryota,38EIW@33154|Opisthokonta,3BBGZ@33208|Metazoa,3CRCU@33213|Bilateria,480IW@7711|Chordata,48Y0X@7742|Vertebrata,3J8ET@40674|Mammalia,3ETUC@33554|Carnivora
DescriptionRNA terminal phosphate
COG categoryA
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12290Gvermi12290Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4105530..4106717 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12290.t1.start1Gvermi12290.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4105530..4105532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12290.t1.CDS1Gvermi12290.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4105530..4106717 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12290.t1.exon1Gvermi12290.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4105530..4106717 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12290.t1.stop1Gvermi12290.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4106715..4106717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12290.t1Gvermi12290.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4105530..4106717 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MVAIKGKALTFTGGHFLRYRLVLATLSSRPVIINSIREDDAQFPGLSQSE
ICFIRLLDKVTSGTLIKINATGTTISYTPGILIGGNRIVHDCHVSRSISY
YLEPLLMLAPFAKRSIDITLRGVTHTTTDVCIDTTATVSVPLLRRLTIGT
PLQPQLQVRRRSISSGETNGNCNGGLVQFRCDTLNSKIKPIELIEAGFVK
RIRGIAFANRASPGHISRMVDVVRRIFNRFTPDVYIHTDHNNREACGIGF
GLHLVAETTEGCLVGADWSNSSAQTTPEQVAENACRMLLEEVNNGGCVDS
NHSCLALLFCALADSDLNRVRIGRLSDAAIQFMRDLRSFFGVQFKIRVFG
NAVADEANSENSEDSDDEELKNTKEEGVLLSCIGIGLSNVARQRF*
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spliced messenger RNA

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:4105530..4106717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCATAAAAGGAAAAGCCCTCACATTTACTGGTGGCCATTTTCT
TCGCTACCGACTGGTGCTCGCCACGCTTTCATCAAGACCAGTGATAATAA
ACTCTATACGAGAAGATGATGCACAGTTTCCGGGCCTTTCACAGTCAGAG
ATATGTTTCATTCGGCTTTTGGACAAAGTTACCAGCGGAACTCTCATAAA
AATCAACGCGACAGGAACAACTATATCGTACACTCCAGGAATTCTAATCG
GTGGAAATCGCATTGTTCATGATTGTCATGTTTCACGTTCGATTTCCTAT
TATCTTGAACCGCTTTTGATGCTCGCTCCCTTTGCGAAGCGTTCTATAGA
TATCACCCTTAGAGGCGTGACCCACACGACTACTGATGTTTGTATTGACA
CAACTGCTACTGTTTCCGTTCCACTCTTACGCCGCCTTACCATAGGCACA
CCTCTGCAACCGCAACTGCAAGTTAGGAGACGCTCAATATCAAGTGGCGA
AACAAATGGCAACTGCAATGGCGGGCTTGTTCAGTTTCGATGCGACACTC
TAAACTCAAAGATAAAACCAATAGAACTCATAGAGGCAGGCTTCGTGAAG
AGGATCAGAGGCATCGCATTTGCAAACCGGGCTTCACCGGGACACATTTC
GCGCATGGTAGATGTCGTTCGACGCATATTCAATCGATTTACGCCCGATG
TTTATATACATACGGATCATAACAACCGGGAAGCCTGTGGAATTGGGTTT
GGACTTCATCTTGTTGCCGAAACCACTGAAGGCTGTCTCGTAGGGGCAGA
TTGGTCAAACTCCAGTGCACAGACGACTCCCGAGCAAGTGGCGGAAAACG
CATGTCGCATGCTCTTGGAAGAAGTCAACAATGGTGGTTGTGTTGATTCT
AACCATAGTTGTCTGGCGCTTCTGTTCTGCGCTCTGGCAGATTCTGATTT
AAACCGGGTTCGAATCGGTCGATTAAGCGACGCCGCCATTCAGTTTATGC
GAGATCTGCGCTCCTTCTTTGGTGTGCAGTTTAAGATTCGCGTCTTTGGT
AATGCTGTAGCCGATGAAGCAAACTCCGAGAACTCAGAGGATTCAGATGA
TGAAGAACTCAAGAACACAAAAGAAGAAGGCGTCCTTCTTTCGTGCATTG
GCATCGGTTTATCAAATGTCGCTCGTCAACGCTTTTAA
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protein sequence of Gvermi12290.t1

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MVAIKGKALTFTGGHFLRYRLVLATLSSRPVIINSIREDDAQFPGLSQSE
ICFIRLLDKVTSGTLIKINATGTTISYTPGILIGGNRIVHDCHVSRSISY
YLEPLLMLAPFAKRSIDITLRGVTHTTTDVCIDTTATVSVPLLRRLTIGT
PLQPQLQVRRRSISSGETNGNCNGGLVQFRCDTLNSKIKPIELIEAGFVK
RIRGIAFANRASPGHISRMVDVVRRIFNRFTPDVYIHTDHNNREACGIGF
GLHLVAETTEGCLVGADWSNSSAQTTPEQVAENACRMLLEEVNNGGCVDS
NHSCLALLFCALADSDLNRVRIGRLSDAAIQFMRDLRSFFGVQFKIRVFG
NAVADEANSENSEDSDDEELKNTKEEGVLLSCIGIGLSNVARQRF*
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mRNA from alignment at ScGOVlb_3404:4105530..4106717+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:4105530..4106717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCATAAAAGGAAAAGCCCTCACATTTACTGGTGGCCATTTTCT
TCGCTACCGACTGGTGCTCGCCACGCTTTCATCAAGACCAGTGATAATAA
ACTCTATACGAGAAGATGATGCACAGTTTCCGGGCCTTTCACAGTCAGAG
ATATGTTTCATTCGGCTTTTGGACAAAGTTACCAGCGGAACTCTCATAAA
AATCAACGCGACAGGAACAACTATATCGTACACTCCAGGAATTCTAATCG
GTGGAAATCGCATTGTTCATGATTGTCATGTTTCACGTTCGATTTCCTAT
TATCTTGAACCGCTTTTGATGCTCGCTCCCTTTGCGAAGCGTTCTATAGA
TATCACCCTTAGAGGCGTGACCCACACGACTACTGATGTTTGTATTGACA
CAACTGCTACTGTTTCCGTTCCACTCTTACGCCGCCTTACCATAGGCACA
CCTCTGCAACCGCAACTGCAAGTTAGGAGACGCTCAATATCAAGTGGCGA
AACAAATGGCAACTGCAATGGCGGGCTTGTTCAGTTTCGATGCGACACTC
TAAACTCAAAGATAAAACCAATAGAACTCATAGAGGCAGGCTTCGTGAAG
AGGATCAGAGGCATCGCATTTGCAAACCGGGCTTCACCGGGACACATTTC
GCGCATGGTAGATGTCGTTCGACGCATATTCAATCGATTTACGCCCGATG
TTTATATACATACGGATCATAACAACCGGGAAGCCTGTGGAATTGGGTTT
GGACTTCATCTTGTTGCCGAAACCACTGAAGGCTGTCTCGTAGGGGCAGA
TTGGTCAAACTCCAGTGCACAGACGACTCCCGAGCAAGTGGCGGAAAACG
CATGTCGCATGCTCTTGGAAGAAGTCAACAATGGTGGTTGTGTTGATTCT
AACCATAGTTGTCTGGCGCTTCTGTTCTGCGCTCTGGCAGATTCTGATTT
AAACCGGGTTCGAATCGGTCGATTAAGCGACGCCGCCATTCAGTTTATGC
GAGATCTGCGCTCCTTCTTTGGTGTGCAGTTTAAGATTCGCGTCTTTGGT
AATGCTGTAGCCGATGAAGCAAACTCCGAGAACTCAGAGGATTCAGATGA
TGAAGAACTCAAGAACACAAAAGAAGAAGGCGTCCTTCTTTCGTGCATTG
GCATCGGTTTATCAAATGTCGCTCGTCAACGCTTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4105530..4106717+

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:4105530..4106717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCATAAAAGGAAAAGCCCTCACATTTACTGGTGGCCATTTTCT
TCGCTACCGACTGGTGCTCGCCACGCTTTCATCAAGACCAGTGATAATAA
ACTCTATACGAGAAGATGATGCACAGTTTCCGGGCCTTTCACAGTCAGAG
ATATGTTTCATTCGGCTTTTGGACAAAGTTACCAGCGGAACTCTCATAAA
AATCAACGCGACAGGAACAACTATATCGTACACTCCAGGAATTCTAATCG
GTGGAAATCGCATTGTTCATGATTGTCATGTTTCACGTTCGATTTCCTAT
TATCTTGAACCGCTTTTGATGCTCGCTCCCTTTGCGAAGCGTTCTATAGA
TATCACCCTTAGAGGCGTGACCCACACGACTACTGATGTTTGTATTGACA
CAACTGCTACTGTTTCCGTTCCACTCTTACGCCGCCTTACCATAGGCACA
CCTCTGCAACCGCAACTGCAAGTTAGGAGACGCTCAATATCAAGTGGCGA
AACAAATGGCAACTGCAATGGCGGGCTTGTTCAGTTTCGATGCGACACTC
TAAACTCAAAGATAAAACCAATAGAACTCATAGAGGCAGGCTTCGTGAAG
AGGATCAGAGGCATCGCATTTGCAAACCGGGCTTCACCGGGACACATTTC
GCGCATGGTAGATGTCGTTCGACGCATATTCAATCGATTTACGCCCGATG
TTTATATACATACGGATCATAACAACCGGGAAGCCTGTGGAATTGGGTTT
GGACTTCATCTTGTTGCCGAAACCACTGAAGGCTGTCTCGTAGGGGCAGA
TTGGTCAAACTCCAGTGCACAGACGACTCCCGAGCAAGTGGCGGAAAACG
CATGTCGCATGCTCTTGGAAGAAGTCAACAATGGTGGTTGTGTTGATTCT
AACCATAGTTGTCTGGCGCTTCTGTTCTGCGCTCTGGCAGATTCTGATTT
AAACCGGGTTCGAATCGGTCGATTAAGCGACGCCGCCATTCAGTTTATGC
GAGATCTGCGCTCCTTCTTTGGTGTGCAGTTTAAGATTCGCGTCTTTGGT
AATGCTGTAGCCGATGAAGCAAACTCCGAGAACTCAGAGGATTCAGATGA
TGAAGAACTCAAGAACACAAAAGAAGAAGGCGTCCTTCTTTCGTGCATTG
GCATCGGTTTATCAAATGTCGCTCGTCAACGCTTTTAA
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