Gvermi12495.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12495.t1
Unique NameGvermi12495.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5464064..5465411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog562743.JH976434_gene1778
PFAMsCBM_4_9,CBM_6,Cadherin-like,F5_F8_type_C,FIVAR,Glyco_hydro_16,SLH
Max annot lvl91061|Bacilli
Evalue2.06e-35
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,1TR5U@1239|Firmicutes,4HB9D@91061|Bacilli
DescriptionPFAM glycoside hydrolase family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12495Gvermi12495Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5464064..5465411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12495.t1Gvermi12495.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5464064..5465411 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12495.t1.stop1Gvermi12495.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5464064..5464066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12495.t1.CDS1Gvermi12495.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5464064..5464338 -
Gvermi12495.t1.CDS2Gvermi12495.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5464410..5464496 -
Gvermi12495.t1.CDS3Gvermi12495.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5464598..5464952 -
Gvermi12495.t1.CDS4Gvermi12495.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5465050..5465199 -
Gvermi12495.t1.CDS5Gvermi12495.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5465367..5465411 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12495.t1.exon1Gvermi12495.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5464064..5464338 -
Gvermi12495.t1.exon2Gvermi12495.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5464410..5464496 -
Gvermi12495.t1.exon3Gvermi12495.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5464598..5464952 -
Gvermi12495.t1.exon4Gvermi12495.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5465050..5465199 -
Gvermi12495.t1.exon5Gvermi12495.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5465367..5465411 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12495.t1.intron1Gvermi12495.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5464339..5464409 -
Gvermi12495.t1.intron2Gvermi12495.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5464497..5464597 -
Gvermi12495.t1.intron3Gvermi12495.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5464953..5465049 -
Gvermi12495.t1.intron4Gvermi12495.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5465200..5465366 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12495.t1.start1Gvermi12495.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5465409..5465411 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12495.t1 ID=Gvermi12495.t1|Name=Gvermi12495.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=304bp
MVPSPPASFSAIPSLYIAKHALNVTIRIKITLFYGSIVSVGISLILSKSI
FAIFIFYDGSTNNITKFGAGQNSIYFAPNWASGPVFRNEWDPNLVQWDGN
KLSLTVEKRIDEIFYGAAIRTHSRWYGYGCVSACMKPIDVSGIISSLFTY
TGKYDGIGGSTPNQNEIDIEFEGHDTTKVQFNFYTNYDENSVQRNEYVHD
LGYDASQSYNVYGFRWTPWGIQWEVNGQVVKEVSNENGNTTPVVTATTVQ
KVMANAWIVPEATGPFFGGVFDSDTFVSASAEYRWIRYEKLDEHGCCAIS
DSC*
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spliced messenger RNA

>Gvermi12495.t1 ID=Gvermi12495.t1|Name=Gvermi12495.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_3404:5464064..5465411- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCTCGCCCCCAGCTTCATTTTCAGCGATTCCATCATTGTATAT
TGCAAAGCACGCCCTTAACGTCACCATCCGCATCAAGATCACCCTTTTTT
ACGGTTCAATTGTCTCCGTCGGTATCTCCCTCATTCTCTCCAAAAGCATC
TTTGCAATCTTCATCTTCTACGACGGCTCCACCAACAACATCACCAAATT
CGGTGCTGGTCAAAACTCAATATATTTTGCACCAAACTGGGCTTCTGGGC
CTGTTTTTCGAAATGAGTGGGATCCAAATCTTGTTCAGTGGGATGGAAAT
AAATTATCCCTGACGGTGGAAAAGAGAATAGATGAAATTTTCTATGGAGC
TGCGATAAGAACGCATTCCCGTTGGTACGGATATGGATGCGTCAGCGCCT
GCATGAAACCCATTGACGTTTCGGGAATTATCTCGTCCTTGTTCACATAT
ACTGGAAAGTATGATGGTATTGGAGGATCTACTCCGAATCAGAATGAGAT
TGACATCGAATTTGAGGGCCATGACACCACAAAAGTCCAGTTCAACTTCT
ACACTAATTATGACGAAAACTCAGTTCAGAGAAATGAATATGTCCATGAT
CTTGGCTACGATGCTTCTCAGAGTTATAATGTCTACGGGTTTCGGTGGAC
ACCTTGGGGAATTCAATGGGAGGTCAATGGTCAAGTCGTAAAAGAAGTAT
CAAATGAGAACGGAAATACTACACCAGTGGTAACTGCAACTACCGTTCAA
AAAGTGATGGCGAATGCCTGGATAGTTCCAGAGGCCACTGGGCCATTCTT
CGGTGGAGTCTTTGACTCCGACACATTTGTCAGCGCCAGCGCTGAATACC
GATGGATCCGATATGAGAAGCTTGATGAGCACGGGTGTTGTGCTATTTCA
GATTCTTGTTGA
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protein sequence of Gvermi12495.t1

>Gvermi12495.t1 ID=Gvermi12495.t1|Name=Gvermi12495.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=304bp
MVPSPPASFSAIPSLYIAKHALNVTIRIKITLFYGSIVSVGISLILSKSI
FAIFIFYDGSTNNITKFGAGQNSIYFAPNWASGPVFRNEWDPNLVQWDGN
KLSLTVEKRIDEIFYGAAIRTHSRWYGYGCVSACMKPIDVSGIISSLFTY
TGKYDGIGGSTPNQNEIDIEFEGHDTTKVQFNFYTNYDENSVQRNEYVHD
LGYDASQSYNVYGFRWTPWGIQWEVNGQVVKEVSNENGNTTPVVTATTVQ
KVMANAWIVPEATGPFFGGVFDSDTFVSASAEYRWIRYEKLDEHGCCAIS
DSC*
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mRNA from alignment at ScGOVlb_3404:5464064..5465411-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12495.t1 ID=Gvermi12495.t1|Name=Gvermi12495.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1348bp|location=Sequence derived from alignment at ScGOVlb_3404:5464064..5465411- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCCCTCGCCCCCAGCTTCATTTTCAGCGATTCCATCATTGGTTTT
TTCTAGCAGCCCATCACCATCTCAAGGAGTTCGAAGTTCTCCGTTGCCAA
CGCCAATGCTTAGCCCATCTTTTGTATTTACAGAAACTCCGCCTCTTGTT
CAATCGCCACCAAGCCCGTCATCGTCCATCTCTGTTTCAGGGTCTCCATT
TCCATCAATTAGTATATTGCAAAGCACGCCCTTAACGTCACCATCCGCAT
CAAGATCACCCTTTTTTACGGTTCAATTGTCTCCGTCGGTATCTCCCTCA
TTCTCTCCAAAAGCATCTTTGCAATCTTCATCTTCTACGACGGCTCCACC
AACAACATCACCGTCACCGTCTTTTTCATCCTTCTGCAGAAGTGGGTGTA
GATGCGAGTCACCAGGGGAACTTCTGGGTGAATCGTCATTTGACGAATCT
GAACTTGAGAAATTCGGTGCTGGTCAAAACTCAATATATTTTGCACCAAA
CTGGGCTTCTGGGCCTGTTTTTCGAAATGAGTGGGATCCAAATCTTGTTC
AGTGGGATGGAAATAAATTATCCCTGACGGTGGAAAAGAGAATAGATGAA
ATTTTCTATGGAGCTGCGATAAGAACGCATTCCCGTTGGTACGGATATGG
ATGCGTCAGCGCCTGCATGAAACCCATTGACGTTTCGGGAATTATCTCGT
CCTTGTTCACATATACTGGAAAGTATGATGGTATTGGAGGATCTACTCCG
AATCAGAATGAGATTGACATCGAATTTGAGGGCCATGACACCACAAAAGT
CCAGTTCAACTTCTGTAAGTTCATATATAAAGTATATATATATATATATT
GACATTTTCATCGTTTCCGTGACCTCTGAATTTGGGACTAACATACCATA
TTTTGCGCCAAAAAGACACTAATTATGACGAAAACTCAGTTCAGAGAAAT
GAATATGTCCATGATCTTGGCTACGATGCTTCTCAGAGTTATAATGTCTA
CGGTAAGTTAAAGAGCACCCTAAGTTTCTAGTCGATGGGATAAGATTCAA
ACTAATATACAGAGCTTCTGCAGGGTTTCGGTGGACACCTTGGGGAATTC
AATGGGAGGTCAATGGTCAAGTCGTAAAAGAAGTATCAAATGAGAACGGA
AATACTACACCAGTGGTAACTGCAACTACCGTTCAAAAAGTGATGGCGAA
TGCCTGGATAGTTCCAGAGGCCACTGGGCCATTCTTCGGTGGAGTCTTTG
ACTCCGACACATTTGTCAGCGCCAGCGCTGAATACCGATGGATCCGATAT
GAGAAGCTTGATGAGCACGGGTGTTGTGCTATTTCAGATTCTTGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5464064..5465411-

>Gvermi12495.t1 ID=Gvermi12495.t1|Name=Gvermi12495.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=912bp|location=Sequence derived from alignment at ScGOVlb_3404:5464064..5465411- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCCCTCGCCCCCAGCTTCATTTTCAGCGATTCCATCATTGTATAT
TGCAAAGCACGCCCTTAACGTCACCATCCGCATCAAGATCACCCTTTTTT
ACGGTTCAATTGTCTCCGTCGGTATCTCCCTCATTCTCTCCAAAAGCATC
TTTGCAATCTTCATCTTCTACGACGGCTCCACCAACAACATCACCAAATT
CGGTGCTGGTCAAAACTCAATATATTTTGCACCAAACTGGGCTTCTGGGC
CTGTTTTTCGAAATGAGTGGGATCCAAATCTTGTTCAGTGGGATGGAAAT
AAATTATCCCTGACGGTGGAAAAGAGAATAGATGAAATTTTCTATGGAGC
TGCGATAAGAACGCATTCCCGTTGGTACGGATATGGATGCGTCAGCGCCT
GCATGAAACCCATTGACGTTTCGGGAATTATCTCGTCCTTGTTCACATAT
ACTGGAAAGTATGATGGTATTGGAGGATCTACTCCGAATCAGAATGAGAT
TGACATCGAATTTGAGGGCCATGACACCACAAAAGTCCAGTTCAACTTCT
ACACTAATTATGACGAAAACTCAGTTCAGAGAAATGAATATGTCCATGAT
CTTGGCTACGATGCTTCTCAGAGTTATAATGTCTACGGGTTTCGGTGGAC
ACCTTGGGGAATTCAATGGGAGGTCAATGGTCAAGTCGTAAAAGAAGTAT
CAAATGAGAACGGAAATACTACACCAGTGGTAACTGCAACTACCGTTCAA
AAAGTGATGGCGAATGCCTGGATAGTTCCAGAGGCCACTGGGCCATTCTT
CGGTGGAGTCTTTGACTCCGACACATTTGTCAGCGCCAGCGCTGAATACC
GATGGATCCGATATGAGAAGCTTGATGAGCACGGGTGTTGTGCTATTTCA
GATTCTTGTTGA
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