Gvermi12216.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12216.t1
Unique NameGvermi12216.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3870774..3872123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709346.1
PFAMsPBD,PH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04409,ko:K08286
KEGG Pathwayko04010,ko04011,ko04012,ko04014,ko04024,ko04062,ko04360,ko04392,ko04510,ko04650,ko04660,ko04666,ko04810,ko05120,ko05205,ko05211,map04010,map04011,map04012,map04014,map04024,map04062,map04360,map04392,map04510,map04650,map04660,map04666,map04810,map05120,map05205,map05211
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001891,GO:0001932,GO:0001934,GO:0003674,GO:0003779,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007265,GO:0007266,GO:0007346,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009267,GO:0009605,GO:0009893,GO:0009966,GO:0009987,GO:0009991,GO:0010562,GO:0010564,GO:0010604,GO:0010646,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016477,GO:0016740,GO:0016772,GO:0016773,GO:0016905,GO:0017016,GO:0017022,GO:0017048,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030010,GO:0030029,GO:0030036,GO:0030100,GO:0030587,GO:0031033,GO:0031034,GO:0031036,GO:0031038,GO:0031098,GO:0031152,GO:0031156,GO:0031252,GO:0031254,GO:0031267,GO:0031272,GO:0031273,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0032147,GO:0032153,GO:0032154,GO:0032155,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032502,GO:0032781,GO:0032879,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034622,GO:0035556,GO:0036211,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0043408,GO:0043412,GO:0043462,GO:0043549,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045159,GO:0045787,GO:0045807,GO:0045859,GO:0045860,GO:0045937,GO:0046777,GO:0048365,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0048870,GO:0050764,GO:0050766,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051302,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051641,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0060491,GO:0060627,GO:0061640,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090702,GO:0097204,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0099120,GO:0099568,GO:0120032,GO:0120033,GO:0120035,GO:0140096,GO:1901564,GO:1902463,GO:1902531,GO:1903047
Evalue2.18e-72
EggNOG OGsKOG0578@1|root,KOG0578@2759|Eukaryota
EC2.7.11.1
DescriptionRac GTPase binding
COG categoryF
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12216Gvermi12216Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3870774..3872123 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12216.t1.start1Gvermi12216.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3870774..3870776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12216.t1.CDS1Gvermi12216.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3870774..3872123 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12216.t1.exon1Gvermi12216.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3870774..3872123 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12216.t1.stop1Gvermi12216.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3872121..3872123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12216.t1Gvermi12216.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3870774..3872123 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12216.t1 ID=Gvermi12216.t1|Name=Gvermi12216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=450bp
MYAESIRRVFKSLSPKKFAVQAAADVAVSPRCEPSPDPTAAPAPRSCAEA
ASTQYSRYISRLSSRAAENIPAQPTTAPRPSESPQRTLEPPMSRLNRRAV
RDVTLQFDNIPVCDPANGEALPPLNGMLEENIPPQAKTLSSKRVSHSNDG
EDECHELPPMHLEVNPCLHYDRFVPIGKGGSGSVYFARSKSDGNQFALKK
VTPTTPAKSRALENEIRTMHALKHENIVQCFGAYSYESDVWIVMEAMDVG
CLTHVLDFLRDKSYLLSENHIAYILRETLKGLWAMHSRHCMHRDIKSDNV
LVSSTGEVKLGDFEYTAELTAKSPKRRTVVGTAWWMAPETVRSSFYDYGA
DVWSIGILSIECAEWVPPLFGMESSEAMQVIREGVQIQGFKRPDIWSPEF
ADFVRGCLVRDRDERYSVRDLLEHPFLSKACSKTQMANVFRAVRGMPPL*
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spliced messenger RNA

>Gvermi12216.t1 ID=Gvermi12216.t1|Name=Gvermi12216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at ScGOVlb_3404:3870774..3872123+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCCGAATCGATTCGCCGAGTCTTCAAGTCCCTCTCCCCGAAGAA
GTTCGCCGTGCAAGCCGCTGCAGATGTTGCCGTGTCGCCACGCTGCGAAC
CTTCGCCGGACCCCACTGCCGCACCAGCTCCGCGTTCATGCGCAGAGGCT
GCCTCCACGCAGTACTCGCGTTACATCTCGCGTCTATCCTCACGAGCAGC
GGAGAACATCCCTGCACAGCCTACAACAGCCCCAAGACCCTCAGAATCCC
CGCAACGTACTCTTGAGCCCCCGATGAGTCGCCTAAATCGCCGCGCGGTC
CGTGATGTGACTTTGCAATTCGACAACATTCCCGTCTGCGACCCTGCAAA
TGGTGAGGCTCTGCCGCCGCTGAACGGCATGCTGGAGGAAAACATACCCC
CGCAAGCGAAAACGCTTTCCTCAAAGAGAGTTTCGCACAGCAATGATGGC
GAGGACGAATGTCATGAACTTCCGCCGATGCATCTTGAGGTCAACCCGTG
TTTACATTATGATCGTTTTGTTCCCATCGGAAAAGGAGGCAGTGGCAGTG
TATATTTTGCGCGTTCCAAGTCTGATGGGAATCAATTTGCCCTCAAGAAA
GTTACACCCACAACTCCTGCCAAGTCGCGTGCGTTGGAGAACGAGATCAG
AACTATGCATGCCCTGAAACACGAGAACATCGTCCAGTGCTTCGGTGCGT
ACAGCTACGAATCCGACGTGTGGATTGTGATGGAAGCAATGGATGTTGGT
TGCTTGACTCATGTACTAGACTTCTTGCGAGATAAGTCCTATTTGTTGTC
GGAGAACCACATCGCATACATTTTGAGGGAGACGCTCAAAGGTCTCTGGG
CGATGCATTCCAGGCACTGTATGCATAGAGACATCAAAAGTGATAATGTC
CTTGTGTCTTCAACTGGAGAAGTCAAACTAGGTGACTTCGAATACACTGC
GGAGTTGACCGCCAAGAGTCCTAAGCGACGTACGGTGGTCGGCACGGCCT
GGTGGATGGCTCCTGAAACCGTTCGCAGCAGCTTTTATGACTACGGGGCC
GACGTCTGGTCTATTGGAATCCTTTCTATTGAATGCGCTGAATGGGTGCC
TCCACTGTTTGGCATGGAGAGTTCGGAGGCGATGCAGGTCATTCGCGAGG
GTGTCCAAATCCAAGGCTTCAAGAGACCTGACATCTGGAGCCCAGAATTT
GCAGACTTTGTGAGAGGTTGCCTCGTCAGGGATCGCGACGAGCGTTATTC
CGTACGAGATCTGTTGGAACATCCGTTTTTGAGCAAAGCTTGCTCAAAGA
CGCAAATGGCCAATGTCTTCAGAGCCGTACGTGGAATGCCGCCGCTGTAG
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protein sequence of Gvermi12216.t1

>Gvermi12216.t1 ID=Gvermi12216.t1|Name=Gvermi12216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=450bp
MYAESIRRVFKSLSPKKFAVQAAADVAVSPRCEPSPDPTAAPAPRSCAEA
ASTQYSRYISRLSSRAAENIPAQPTTAPRPSESPQRTLEPPMSRLNRRAV
RDVTLQFDNIPVCDPANGEALPPLNGMLEENIPPQAKTLSSKRVSHSNDG
EDECHELPPMHLEVNPCLHYDRFVPIGKGGSGSVYFARSKSDGNQFALKK
VTPTTPAKSRALENEIRTMHALKHENIVQCFGAYSYESDVWIVMEAMDVG
CLTHVLDFLRDKSYLLSENHIAYILRETLKGLWAMHSRHCMHRDIKSDNV
LVSSTGEVKLGDFEYTAELTAKSPKRRTVVGTAWWMAPETVRSSFYDYGA
DVWSIGILSIECAEWVPPLFGMESSEAMQVIREGVQIQGFKRPDIWSPEF
ADFVRGCLVRDRDERYSVRDLLEHPFLSKACSKTQMANVFRAVRGMPPL*
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mRNA from alignment at ScGOVlb_3404:3870774..3872123+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12216.t1 ID=Gvermi12216.t1|Name=Gvermi12216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at ScGOVlb_3404:3870774..3872123+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCCGAATCGATTCGCCGAGTCTTCAAGTCCCTCTCCCCGAAGAA
GTTCGCCGTGCAAGCCGCTGCAGATGTTGCCGTGTCGCCACGCTGCGAAC
CTTCGCCGGACCCCACTGCCGCACCAGCTCCGCGTTCATGCGCAGAGGCT
GCCTCCACGCAGTACTCGCGTTACATCTCGCGTCTATCCTCACGAGCAGC
GGAGAACATCCCTGCACAGCCTACAACAGCCCCAAGACCCTCAGAATCCC
CGCAACGTACTCTTGAGCCCCCGATGAGTCGCCTAAATCGCCGCGCGGTC
CGTGATGTGACTTTGCAATTCGACAACATTCCCGTCTGCGACCCTGCAAA
TGGTGAGGCTCTGCCGCCGCTGAACGGCATGCTGGAGGAAAACATACCCC
CGCAAGCGAAAACGCTTTCCTCAAAGAGAGTTTCGCACAGCAATGATGGC
GAGGACGAATGTCATGAACTTCCGCCGATGCATCTTGAGGTCAACCCGTG
TTTACATTATGATCGTTTTGTTCCCATCGGAAAAGGAGGCAGTGGCAGTG
TATATTTTGCGCGTTCCAAGTCTGATGGGAATCAATTTGCCCTCAAGAAA
GTTACACCCACAACTCCTGCCAAGTCGCGTGCGTTGGAGAACGAGATCAG
AACTATGCATGCCCTGAAACACGAGAACATCGTCCAGTGCTTCGGTGCGT
ACAGCTACGAATCCGACGTGTGGATTGTGATGGAAGCAATGGATGTTGGT
TGCTTGACTCATGTACTAGACTTCTTGCGAGATAAGTCCTATTTGTTGTC
GGAGAACCACATCGCATACATTTTGAGGGAGACGCTCAAAGGTCTCTGGG
CGATGCATTCCAGGCACTGTATGCATAGAGACATCAAAAGTGATAATGTC
CTTGTGTCTTCAACTGGAGAAGTCAAACTAGGTGACTTCGAATACACTGC
GGAGTTGACCGCCAAGAGTCCTAAGCGACGTACGGTGGTCGGCACGGCCT
GGTGGATGGCTCCTGAAACCGTTCGCAGCAGCTTTTATGACTACGGGGCC
GACGTCTGGTCTATTGGAATCCTTTCTATTGAATGCGCTGAATGGGTGCC
TCCACTGTTTGGCATGGAGAGTTCGGAGGCGATGCAGGTCATTCGCGAGG
GTGTCCAAATCCAAGGCTTCAAGAGACCTGACATCTGGAGCCCAGAATTT
GCAGACTTTGTGAGAGGTTGCCTCGTCAGGGATCGCGACGAGCGTTATTC
CGTACGAGATCTGTTGGAACATCCGTTTTTGAGCAAAGCTTGCTCAAAGA
CGCAAATGGCCAATGTCTTCAGAGCCGTACGTGGAATGCCGCCGCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3870774..3872123+

>Gvermi12216.t1 ID=Gvermi12216.t1|Name=Gvermi12216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1350bp|location=Sequence derived from alignment at ScGOVlb_3404:3870774..3872123+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCCGAATCGATTCGCCGAGTCTTCAAGTCCCTCTCCCCGAAGAA
GTTCGCCGTGCAAGCCGCTGCAGATGTTGCCGTGTCGCCACGCTGCGAAC
CTTCGCCGGACCCCACTGCCGCACCAGCTCCGCGTTCATGCGCAGAGGCT
GCCTCCACGCAGTACTCGCGTTACATCTCGCGTCTATCCTCACGAGCAGC
GGAGAACATCCCTGCACAGCCTACAACAGCCCCAAGACCCTCAGAATCCC
CGCAACGTACTCTTGAGCCCCCGATGAGTCGCCTAAATCGCCGCGCGGTC
CGTGATGTGACTTTGCAATTCGACAACATTCCCGTCTGCGACCCTGCAAA
TGGTGAGGCTCTGCCGCCGCTGAACGGCATGCTGGAGGAAAACATACCCC
CGCAAGCGAAAACGCTTTCCTCAAAGAGAGTTTCGCACAGCAATGATGGC
GAGGACGAATGTCATGAACTTCCGCCGATGCATCTTGAGGTCAACCCGTG
TTTACATTATGATCGTTTTGTTCCCATCGGAAAAGGAGGCAGTGGCAGTG
TATATTTTGCGCGTTCCAAGTCTGATGGGAATCAATTTGCCCTCAAGAAA
GTTACACCCACAACTCCTGCCAAGTCGCGTGCGTTGGAGAACGAGATCAG
AACTATGCATGCCCTGAAACACGAGAACATCGTCCAGTGCTTCGGTGCGT
ACAGCTACGAATCCGACGTGTGGATTGTGATGGAAGCAATGGATGTTGGT
TGCTTGACTCATGTACTAGACTTCTTGCGAGATAAGTCCTATTTGTTGTC
GGAGAACCACATCGCATACATTTTGAGGGAGACGCTCAAAGGTCTCTGGG
CGATGCATTCCAGGCACTGTATGCATAGAGACATCAAAAGTGATAATGTC
CTTGTGTCTTCAACTGGAGAAGTCAAACTAGGTGACTTCGAATACACTGC
GGAGTTGACCGCCAAGAGTCCTAAGCGACGTACGGTGGTCGGCACGGCCT
GGTGGATGGCTCCTGAAACCGTTCGCAGCAGCTTTTATGACTACGGGGCC
GACGTCTGGTCTATTGGAATCCTTTCTATTGAATGCGCTGAATGGGTGCC
TCCACTGTTTGGCATGGAGAGTTCGGAGGCGATGCAGGTCATTCGCGAGG
GTGTCCAAATCCAAGGCTTCAAGAGACCTGACATCTGGAGCCCAGAATTT
GCAGACTTTGTGAGAGGTTGCCTCGTCAGGGATCGCGACGAGCGTTATTC
CGTACGAGATCTGTTGGAACATCCGTTTTTGAGCAAAGCTTGCTCAAAGA
CGCAAATGGCCAATGTCTTCAGAGCCGTACGTGGAATGCCGCCGCTGTAG
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