Gvermi12262.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12262.t1
Unique NameGvermi12262.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4022102..4024113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12262Gvermi12262Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4022102..4024113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12262.t1Gvermi12262.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4022102..4024113 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12262.t1.stop1Gvermi12262.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4022102..4022104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12262.t1.CDS1Gvermi12262.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4022102..4022831 -
Gvermi12262.t1.CDS2Gvermi12262.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4023598..4023964 -
Gvermi12262.t1.CDS3Gvermi12262.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4024074..4024113 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12262.t1.exon1Gvermi12262.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4022102..4022831 -
Gvermi12262.t1.exon2Gvermi12262.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4023598..4023964 -
Gvermi12262.t1.exon3Gvermi12262.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4024074..4024113 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12262.t1.intron1Gvermi12262.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4022832..4023597 -
Gvermi12262.t1.intron2Gvermi12262.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4023965..4024073 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12262.t1.start1Gvermi12262.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4024111..4024113 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12262.t1 ID=Gvermi12262.t1|Name=Gvermi12262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=379bp
MRVHLVLDFRSPPEEDLLGDAAVLGGSGGALAQYPTVTEPTDAFVPDILA
PSVDPITIAAPPPAESYGAPSVDPPAMDDVKPGAAPQVLTPLPTASSAGT
NIPPAVSPSYQALAQALEVPAVAALESVRDEMIAHGHYNFQEVMIAGTNT
RGRVSALYERLNKRVDTVTLPDGLQKDLVSVAKRILEMYPIDGTSSSSSA
TPDPEEVEELMKSLLPSPVDILTDSFFRAPLFALVTLLKVARLYGCVTPQ
DPLHYHLELSDVDRDNKNIAAHVWFANFLGYDSETIHASAAHYKDFRGAP
DPSRRPPTVPPKTGVRVELDHVPETTPEVDKVAVKRPNPGLESINRENEV
VRPHQRTGNIPTSSQSSSDVEESDANDS*
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spliced messenger RNA

>Gvermi12262.t1 ID=Gvermi12262.t1|Name=Gvermi12262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at ScGOVlb_3404:4022102..4024113- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTACACCTCGTCTTGGACTTCAGAAGTCCGCCAGAGGAAGACCT
TTTAGGTGATGCTGCTGTGCTAGGTGGCTCCGGTGGTGCGTTGGCACAGT
ATCCGACGGTAACGGAGCCGACTGACGCCTTCGTTCCTGATATTTTGGCT
CCGTCGGTCGATCCGATCACGATTGCCGCTCCGCCTCCCGCGGAGAGCTA
CGGCGCTCCCAGTGTGGATCCTCCGGCGATGGATGACGTCAAACCTGGTG
CGGCACCTCAGGTCTTGACGCCTCTGCCAACGGCATCCTCCGCAGGTACT
AACATTCCGCCAGCGGTTAGTCCTTCCTATCAGGCGTTGGCGCAGGCCTT
AGAAGTACCGGCTGTTGCCGCTTTGGAGAGCGTTAGAGATGAGATGATTG
CCCATGGGCACTACAACTTTCAAGAAGTTATGATTGCCGGTACGAACACG
CGTGGGCGCGTTTCCGCTCTTTATGAGAGACTCAACAAACGTGTTGACAC
CGTCACCCTTCCCGACGGTTTGCAGAAGGACTTGGTTTCAGTTGCGAAAA
GGATATTGGAAATGTATCCGATTGATGGCACTTCCTCATCCTCCTCCGCG
ACTCCAGATCCAGAAGAAGTTGAAGAACTGATGAAAAGTTTACTTCCATC
GCCTGTGGATATTCTCACCGACTCATTCTTTCGTGCACCACTGTTTGCCT
TAGTCACACTGTTAAAGGTTGCTAGGCTCTACGGATGTGTCACACCTCAA
GACCCGCTTCATTATCACCTGGAGTTAAGCGATGTTGACCGTGATAACAA
AAACATCGCCGCACATGTATGGTTCGCGAACTTTCTCGGTTACGATAGTG
AGACTATACACGCATCTGCTGCGCACTATAAGGACTTTCGTGGTGCACCA
GACCCCTCCCGTCGTCCACCTACAGTACCTCCAAAGACTGGTGTTCGCGT
TGAGCTGGATCATGTACCCGAAACGACGCCGGAAGTCGACAAAGTTGCAG
TTAAAAGGCCGAATCCTGGCCTTGAATCAATCAACCGTGAAAATGAAGTC
GTCCGTCCCCATCAACGGACCGGCAATATTCCAACGTCTTCCCAGAGCTC
TTCTGATGTCGAAGAAAGTGATGCAAATGACTCTTGA
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protein sequence of Gvermi12262.t1

>Gvermi12262.t1 ID=Gvermi12262.t1|Name=Gvermi12262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=379bp
MRVHLVLDFRSPPEEDLLGDAAVLGGSGGALAQYPTVTEPTDAFVPDILA
PSVDPITIAAPPPAESYGAPSVDPPAMDDVKPGAAPQVLTPLPTASSAGT
NIPPAVSPSYQALAQALEVPAVAALESVRDEMIAHGHYNFQEVMIAGTNT
RGRVSALYERLNKRVDTVTLPDGLQKDLVSVAKRILEMYPIDGTSSSSSA
TPDPEEVEELMKSLLPSPVDILTDSFFRAPLFALVTLLKVARLYGCVTPQ
DPLHYHLELSDVDRDNKNIAAHVWFANFLGYDSETIHASAAHYKDFRGAP
DPSRRPPTVPPKTGVRVELDHVPETTPEVDKVAVKRPNPGLESINRENEV
VRPHQRTGNIPTSSQSSSDVEESDANDS*
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mRNA from alignment at ScGOVlb_3404:4022102..4024113-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12262.t1 ID=Gvermi12262.t1|Name=Gvermi12262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2012bp|location=Sequence derived from alignment at ScGOVlb_3404:4022102..4024113- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTACACCTCGTCTTGGACTTCAGAAGTCCGCCAGGTACGTTACC
GGAGGTTTTCGAACTATTATCCGAAGCCGAAGGGATTCTCCATTGGTTGT
CTGGCACCCACCGACGTTCTGTTGGCTCTACCCGCAATCTTCAGCGGAGA
GGAAGACCTTTTAGGTGATGCTGCTGTGCTAGGTGGCTCCGGTGGTGCGT
TGGCACAGTATCCGACGGTAACGGAGCCGACTGACGCCTTCGTTCCTGAT
ATTTTGGCTCCGTCGGTCGATCCGATCACGATTGCCGCTCCGCCTCCCGC
GGAGAGCTACGGCGCTCCCAGTGTGGATCCTCCGGCGATGGATGACGTCA
AACCTGGTGCGGCACCTCAGGTCTTGACGCCTCTGCCAACGGCATCCTCC
GCAGGTACTAACATTCCGCCAGCGGTTAGTCCTTCCTATCAGGCGTTGGC
GCAGGCCTTAGAAGTACCGGCTGTTGCCGCTTTGGAGAGCGTTAGAGATG
AGATGATTGCCCATGGGTACAGAGCGAGCCAGCCGCGACGGTTGGGGGCT
CAGCGGGCGTCCCATTGGTTACCCCTTGGTCGCGGATCAGGCCGCCGTGG
CGGTTCGTACACCAATCGTAAGCCTGCAATCCGGCGCAATCTCCCGACGG
CTCTCGCATGCATGTGTGGTCCAGGTTGTGTCCTTGTGGTGCCCCCCGGA
GGGGCACATATCCATTGGAAATTAGTGATCAATAAAACCAACGGTGTGCC
AGGCTTCCAGAGCTGTGCTCGCGCGTGCGTGAATGCCAGCGGTTGATCAA
ATAAAATAATTTACCGATTTTTCTGTCAGTTTGGTGCTGATCGCGGTTAA
ATCATTTCGTGGCGCCGCCGGCTGATTTGTCTTCTTTATTTTACAGTAAT
ATTTTGATTATTCTAGATTACTTTTTTATCTAATTTTATTCAAATTTTAG
ATCGGACTGAATACCGCGTCGAGCACTCGACGCCCGTACTCATCCGTTCA
CACATAATAGCCAGCCGTACGTAGTGGTTGCCGAAAGAGAGGGGACGGAA
GAGAAATAAGAGAAGTAAGAAGTAAAACCTACCTTTTGGTTATCTTCACC
CGCTGTGGTGCTCCGCCCAGCCCTTCTCTACCATCCATTTGTCTTTACTC
ACACTTTCTCTACTCTACATCCTAAAACTATCGAGGCTCAAACTTTGCCA
CGCAATACATTGTGGTCTTGCGCAGTTTGCGTGAGTTTACAGGCGGTTCC
AACGACAATCCGGATTTAGAATCGTCTTGTAGGCACTACAACTTTCAAGA
AGTTATGATTGCCGGTACGAACACGCGTGGGCGCGTTTCCGCTCTTTATG
AGAGACTCAACAAACGTGTTGACACCGTCACCCTTCCCGACGGTTTGCAG
AAGGACTTGGTTTCAGTTGCGAAAAGGATATTGGAAATGTATCCGATTGA
TGGCACTTCCTCATCCTCCTCCGCGACTCCAGATCCAGAAGAAGTTGAAG
AACTGATGAAAAGTTTACTTCCATCGCCTGTGGATATTCTCACCGACTCA
TTCTTTCGTGCACCACTGTTTGCCTTAGTCACACTGTTAAAGGTTGCTAG
GCTCTACGGATGTGTCACACCTCAAGACCCGCTTCATTATCACCTGGAGT
TAAGCGATGTTGACCGTGATAACAAAAACATCGCCGCACATGTATGGTTC
GCGAACTTTCTCGGTTACGATAGTGAGACTATACACGCATCTGCTGCGCA
CTATAAGGACTTTCGTGGTGCACCAGACCCCTCCCGTCGTCCACCTACAG
TACCTCCAAAGACTGGTGTTCGCGTTGAGCTGGATCATGTACCCGAAACG
ACGCCGGAAGTCGACAAAGTTGCAGTTAAAAGGCCGAATCCTGGCCTTGA
ATCAATCAACCGTGAAAATGAAGTCGTCCGTCCCCATCAACGGACCGGCA
ATATTCCAACGTCTTCCCAGAGCTCTTCTGATGTCGAAGAAAGTGATGCA
AATGACTCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4022102..4024113-

>Gvermi12262.t1 ID=Gvermi12262.t1|Name=Gvermi12262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1137bp|location=Sequence derived from alignment at ScGOVlb_3404:4022102..4024113- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTACACCTCGTCTTGGACTTCAGAAGTCCGCCAGAGGAAGACCT
TTTAGGTGATGCTGCTGTGCTAGGTGGCTCCGGTGGTGCGTTGGCACAGT
ATCCGACGGTAACGGAGCCGACTGACGCCTTCGTTCCTGATATTTTGGCT
CCGTCGGTCGATCCGATCACGATTGCCGCTCCGCCTCCCGCGGAGAGCTA
CGGCGCTCCCAGTGTGGATCCTCCGGCGATGGATGACGTCAAACCTGGTG
CGGCACCTCAGGTCTTGACGCCTCTGCCAACGGCATCCTCCGCAGGTACT
AACATTCCGCCAGCGGTTAGTCCTTCCTATCAGGCGTTGGCGCAGGCCTT
AGAAGTACCGGCTGTTGCCGCTTTGGAGAGCGTTAGAGATGAGATGATTG
CCCATGGGCACTACAACTTTCAAGAAGTTATGATTGCCGGTACGAACACG
CGTGGGCGCGTTTCCGCTCTTTATGAGAGACTCAACAAACGTGTTGACAC
CGTCACCCTTCCCGACGGTTTGCAGAAGGACTTGGTTTCAGTTGCGAAAA
GGATATTGGAAATGTATCCGATTGATGGCACTTCCTCATCCTCCTCCGCG
ACTCCAGATCCAGAAGAAGTTGAAGAACTGATGAAAAGTTTACTTCCATC
GCCTGTGGATATTCTCACCGACTCATTCTTTCGTGCACCACTGTTTGCCT
TAGTCACACTGTTAAAGGTTGCTAGGCTCTACGGATGTGTCACACCTCAA
GACCCGCTTCATTATCACCTGGAGTTAAGCGATGTTGACCGTGATAACAA
AAACATCGCCGCACATGTATGGTTCGCGAACTTTCTCGGTTACGATAGTG
AGACTATACACGCATCTGCTGCGCACTATAAGGACTTTCGTGGTGCACCA
GACCCCTCCCGTCGTCCACCTACAGTACCTCCAAAGACTGGTGTTCGCGT
TGAGCTGGATCATGTACCCGAAACGACGCCGGAAGTCGACAAAGTTGCAG
TTAAAAGGCCGAATCCTGGCCTTGAATCAATCAACCGTGAAAATGAAGTC
GTCCGTCCCCATCAACGGACCGGCAATATTCCAACGTCTTCCCAGAGCTC
TTCTGATGTCGAAGAAAGTGATGCAAATGACTCTTGA
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