Gvermi12320.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12320.t1
Unique NameGvermi12320.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4200965..4201561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3656.XP_008462142.1
PFAMsSYS1
Max annot lvl35493|Streptophyta
KEGG koko:K20318
Evalue6.7e-22
EggNOG OGsKOG4697@1|root,KOG4697@2759|Eukaryota,37U39@33090|Viridiplantae,3GI4T@35493|Streptophyta,4JNWF@91835|fabids
DescriptionProtein SYS1 homolog
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12320Gvermi12320Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4200965..4201561 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12320.t1.start1Gvermi12320.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4200965..4200967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12320.t1.CDS1Gvermi12320.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4200965..4201561 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12320.t1.exon1Gvermi12320.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4200965..4201561 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12320.t1.stop1Gvermi12320.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4201559..4201561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12320.t1Gvermi12320.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4200965..4201561 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12320.t1 ID=Gvermi12320.t1|Name=Gvermi12320.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=199bp
MAVNGTFYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSI
TDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFA
CTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREI
AVPREDPRRSDNGKHQSTDLEAAINHDSLQRPPSSAPDVESAALTQPA*
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spliced messenger RNA

>Gvermi12320.t1 ID=Gvermi12320.t1|Name=Gvermi12320.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_3404:4200965..4201561+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTCAACGGCACCTTTTACGGCCGCGAACGCTTCGACCCCGTGCT
CATCCTCGCCCAAATTGTGCTTTTGCAGGCGTGCTTCTACACTTCGTACC
TCGTGCTGCTCGTCATTTTCAACTACGCCACCGGCACCACCACGTCCATC
ACCGACCAGATCTTCAACCACACGTACATCACGCTGCGCCACTTTCCCGG
CTGGATTACGTGCACGGCGCTGCTTATCTCTGCTTGCGGCCCTGCCGCCG
TTGCGTTTGTTGCGCTGGTCGGGCGCGCCAAGCGATGCGTCGACTTTGCG
TGCACCCTGTTTATCTCGCACATCATTGCCACCTCGGTGCACTCGGGCTT
TCCCAACACGCTCATGTGGTGGCTGCTCAACACCATTGCCACCATGGGGC
TGGCCACCATAGGAGAGGCCATCAGCTTACGCCTAGAGCTGCGCGAAATT
GCCGTGCCGAGGGAAGACCCCAGACGGAGCGACAATGGAAAACACCAGTC
TACTGACCTGGAGGCGGCCATCAACCACGACTCGCTGCAGCGCCCGCCCT
CCTCCGCGCCCGACGTCGAGTCTGCTGCGCTCACACAGCCTGCCTAA
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protein sequence of Gvermi12320.t1

>Gvermi12320.t1 ID=Gvermi12320.t1|Name=Gvermi12320.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
MAVNGTFYGRERFDPVLILAQIVLLQACFYTSYLVLLVIFNYATGTTTSI
TDQIFNHTYITLRHFPGWITCTALLISACGPAAVAFVALVGRAKRCVDFA
CTLFISHIIATSVHSGFPNTLMWWLLNTIATMGLATIGEAISLRLELREI
AVPREDPRRSDNGKHQSTDLEAAINHDSLQRPPSSAPDVESAALTQPA*
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mRNA from alignment at ScGOVlb_3404:4200965..4201561+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12320.t1 ID=Gvermi12320.t1|Name=Gvermi12320.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_3404:4200965..4201561+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTCAACGGCACCTTTTACGGCCGCGAACGCTTCGACCCCGTGCT
CATCCTCGCCCAAATTGTGCTTTTGCAGGCGTGCTTCTACACTTCGTACC
TCGTGCTGCTCGTCATTTTCAACTACGCCACCGGCACCACCACGTCCATC
ACCGACCAGATCTTCAACCACACGTACATCACGCTGCGCCACTTTCCCGG
CTGGATTACGTGCACGGCGCTGCTTATCTCTGCTTGCGGCCCTGCCGCCG
TTGCGTTTGTTGCGCTGGTCGGGCGCGCCAAGCGATGCGTCGACTTTGCG
TGCACCCTGTTTATCTCGCACATCATTGCCACCTCGGTGCACTCGGGCTT
TCCCAACACGCTCATGTGGTGGCTGCTCAACACCATTGCCACCATGGGGC
TGGCCACCATAGGAGAGGCCATCAGCTTACGCCTAGAGCTGCGCGAAATT
GCCGTGCCGAGGGAAGACCCCAGACGGAGCGACAATGGAAAACACCAGTC
TACTGACCTGGAGGCGGCCATCAACCACGACTCGCTGCAGCGCCCGCCCT
CCTCCGCGCCCGACGTCGAGTCTGCTGCGCTCACACAGCCTGCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4200965..4201561+

>Gvermi12320.t1 ID=Gvermi12320.t1|Name=Gvermi12320.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=597bp|location=Sequence derived from alignment at ScGOVlb_3404:4200965..4201561+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTCAACGGCACCTTTTACGGCCGCGAACGCTTCGACCCCGTGCT
CATCCTCGCCCAAATTGTGCTTTTGCAGGCGTGCTTCTACACTTCGTACC
TCGTGCTGCTCGTCATTTTCAACTACGCCACCGGCACCACCACGTCCATC
ACCGACCAGATCTTCAACCACACGTACATCACGCTGCGCCACTTTCCCGG
CTGGATTACGTGCACGGCGCTGCTTATCTCTGCTTGCGGCCCTGCCGCCG
TTGCGTTTGTTGCGCTGGTCGGGCGCGCCAAGCGATGCGTCGACTTTGCG
TGCACCCTGTTTATCTCGCACATCATTGCCACCTCGGTGCACTCGGGCTT
TCCCAACACGCTCATGTGGTGGCTGCTCAACACCATTGCCACCATGGGGC
TGGCCACCATAGGAGAGGCCATCAGCTTACGCCTAGAGCTGCGCGAAATT
GCCGTGCCGAGGGAAGACCCCAGACGGAGCGACAATGGAAAACACCAGTC
TACTGACCTGGAGGCGGCCATCAACCACGACTCGCTGCAGCGCCCGCCCT
CCTCCGCGCCCGACGTCGAGTCTGCTGCGCTCACACAGCCTGCCTAA
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