Gvermi12228.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12228.t1
Unique NameGvermi12228.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length143
Homology
BLAST of Gvermi12228.t1 vs. uniprot
Match: A0A2V3J028_9FLOR (30S ribosomal protein S8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J028_9FLOR)

HSP 1 Score: 227 bits (579), Expect = 1.510e-74
Identity = 103/141 (73.05%), Postives = 127/141 (90.07%), Query Frame = 0
Query:    1 MRGRGVLLTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEV 141
            MRG+GVLL DP+SDLF RIRNGQ A+RA I HPYSRF   ++ VLI+QGYV S+ IIPP+SPRAPQFN ++++L+YD+ G PAIKRIRRVSKPSRR+YRSIAQLP+ASNGLG+WIL+TPKGV+HCAEAR+++VGGE++GEV
Sbjct:    1 MRGKGVLLRDPVSDLFTRIRNGQTARRATILHPYSRFVSDIIGVLIKQGYVKSMRIIPPESPRAPQFNHIEVSLRYDDYGEPAIKRIRRVSKPSRRVYRSIAQLPLASNGLGSWILTTPKGVIHCAEARQLSVGGEIIGEV 141          
BLAST of Gvermi12228.t1 vs. uniprot
Match: Q7XYA5_GRIJA (Ribosome protein S8 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XYA5_GRIJA)

HSP 1 Score: 182 bits (462), Expect = 9.980e-57
Identity = 87/142 (61.27%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MRGRGVLLTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            M  R VLL DPISDLF RIRNG  AK   I+HPYSRF+  +V  LI Q Y+    I+PP+SPR PQF+ ++I L YD  G PAI+ +RRVS PS R+YR I QLP+A  GLGTWILSTP GV+HC EAR+  +GGEV+GEVF
Sbjct:    1 MSRRPVLLRDPISDLFTRIRNGYAAKHESIYHPYSRFSLAIVKSLISQNYLRDFRIVPPESPRHPQFDHIEIFLSYDLRGKPAIRALRRVSVPSHRVYRKITQLPLARAGLGTWILSTPNGVMHCTEARQKRLGGEVIGEVF 142          
BLAST of Gvermi12228.t1 vs. uniprot
Match: A0A1X6PKC2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKC2_PORUM)

HSP 1 Score: 146 bits (368), Expect = 2.020e-42
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = 0
Query:    4 RGVLLTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            +GV L D +SD FAR+RNGQ A+RA +  P+SR    V+  L   GY++++ ++PP SP AP    + + LKY   G PA+ R+ RVSKPSRR+Y     LP A++GLG W+LSTP+GV+   EAR  NVGGEVLG+VF
Sbjct:    5 KGVALHDALSDTFARLRNGQTARRAAVTVPHSRHVLAVLRTLTALGYLSAVRVVPPPSPAAPPHPTLAVDLKYGPGGAPAMVRLARVSKPSRRVYAGGRSLPPAASGLGEWLLSTPQGVMSGTEARRRNVGGEVLGQVF 143          
BLAST of Gvermi12228.t1 vs. uniprot
Match: A0A3D3IVW4_9PROT (30S ribosomal protein S8 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D3IVW4_9PROT)

HSP 1 Score: 128 bits (322), Expect = 1.390e-35
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 0
Query:    8 LTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            ++DPISDLFARIRNGQ A+  +I  P S++ + V+ VL R+GY+ + +       RA     + I LKYD+ G P IK + RVS P RR+Y  I ++    NGLG +ILSTPKGVL   EARE NVGGEVLG+VF
Sbjct:    3 ISDPISDLFARIRNGQQARLQVISAPASKYVENVLGVLQREGYIRTFSRKEVSKGRA----DVNIELKYDS-GAPVIKALDRVSTPGRRVYTGIGKIAKFYNGLGIFILSTPKGVLSDREAREQNVGGEVLGKVF 132          
BLAST of Gvermi12228.t1 vs. uniprot
Match: A0A3M1GA32_9PROT (30S ribosomal protein S8 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1GA32_9PROT)

HSP 1 Score: 127 bits (320), Expect = 2.800e-35
Identity = 69/135 (51.11%), Postives = 91/135 (67.41%), Query Frame = 0
Query:    8 LTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            +TDP++D+  RIRNGQ A++  +  P S+    V+DVL R+GY+   +    Q+P++    +++I LKY +EG P I+ I RVSKP RRIY  +  LP  SNGLG  I+STPKGVL  AEARE NVGGEVL  VF
Sbjct:    3 MTDPLADMLTRIRNGQRARKESVLSPGSKLRAHVLDVLQREGYIRGYS----QAPQSHGGVELRIELKY-HEGDPVIREIARVSKPGRRIYMKVKDLPRVSNGLGISIVSTPKGVLSDAEAREANVGGEVLCTVF 132          
BLAST of Gvermi12228.t1 vs. uniprot
Match: RS8_RHOCS (30S ribosomal protein S8 n=10 Tax=Alphaproteobacteria TaxID=28211 RepID=RS8_RHOCS)

HSP 1 Score: 127 bits (319), Expect = 3.970e-35
Identity = 69/135 (51.11%), Postives = 88/135 (65.19%), Query Frame = 0
Query:    8 LTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            L+DP+ D+  RIRNGQ A+ ++I  P S+    V++VL R+GY+   N+   +    P    ++I LKY +EG P IK I RVSKP RRIY  IA LP   NGLG  ILSTP+GV+  AEAR  NVGGEVL +VF
Sbjct:    3 LSDPLGDMLTRIRNGQKARMSVITSPASKLRTNVLEVLKREGYIRGYNVEDVR----PGVRNLRIELKY-HEGEPVIKEIHRVSKPGRRIYSKIADLPRVYNGLGIAILSTPRGVMSDAEARAANVGGEVLCKVF 132          
BLAST of Gvermi12228.t1 vs. uniprot
Match: A0A1F2YRF7_9PROT (30S ribosomal protein S8 n=1 Tax=Alphaproteobacteria bacterium GWF2_58_20 TaxID=1797213 RepID=A0A1F2YRF7_9PROT)

HSP 1 Score: 127 bits (319), Expect = 3.970e-35
Identity = 68/135 (50.37%), Postives = 87/135 (64.44%), Query Frame = 0
Query:    8 LTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            LTDP+ DL  R+RNGQ A+ + I  P SR    V+DVL R+GY+    +      + P    ++IALKY +EG PAIK IRRVS+P RR+Y  I++LP   NGLG  ILSTP+G++   EAR  N GGEVL  VF
Sbjct:    3 LTDPVGDLLTRVRNGQTARISEIESPASRLRAGVLDVLKREGYIRGYTV----EEKRPGVTVLKIALKY-HEGAPAIKEIRRVSRPGRRVYSKISELPKVYNGLGISILSTPQGIMSDNEARTANTGGEVLCRVF 132          
BLAST of Gvermi12228.t1 vs. uniprot
Match: UPI001A9774CD (30S ribosomal protein S8 n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A9774CD)

HSP 1 Score: 126 bits (317), Expect = 7.970e-35
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 0
Query:    8 LTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            L+DP+ D+  RIRNGQ+A++A++  P S     V++VL R+GY+        +    P   +++I LKY +EG PAIK + RVSKP RR+Y  IA+LP   NGLG  ILSTP+GV+   EAR  NVGGEVL  VF
Sbjct:    3 LSDPLGDMLTRIRNGQSARKAVVASPASNLRANVLEVLKREGYIRGYT----REEIRPGVQELRIELKY-HEGQPAIKEVHRVSKPGRRVYSKIAELPRVYNGLGISILSTPRGVMSDLEARAQNVGGEVLCRVF 132          
BLAST of Gvermi12228.t1 vs. uniprot
Match: A0A2N3PN92_9PROT (30S ribosomal protein S8 n=6 Tax=root TaxID=1 RepID=A0A2N3PN92_9PROT)

HSP 1 Score: 125 bits (315), Expect = 1.560e-34
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    7 LLTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            ++TDP+ D+  RIRNGQ AK+A +  P SR    V++VL R+GY+   +    ++ +    +++ I LKY +EG P I+ I RVSKP RR+Y  I  LP  SNGLG  ILSTP+GV+  AEAR  NVGGEVL +VF
Sbjct:    1 MMTDPLGDMLTRIRNGQMAKKAKVTAPASRLRANVLEVLKREGYIRGYS----EAEQRTGVSELTIELKY-HEGAPVIREISRVSKPGRRVYSRIKDLPKVSNGLGISILSTPRGVMSDAEARAANVGGEVLCQVF 131          
BLAST of Gvermi12228.t1 vs. uniprot
Match: A0A0A0D5E9_9PROT (30S ribosomal protein S8 n=5 Tax=Bacteria TaxID=2 RepID=A0A0A0D5E9_9PROT)

HSP 1 Score: 125 bits (315), Expect = 1.600e-34
Identity = 68/135 (50.37%), Postives = 85/135 (62.96%), Query Frame = 0
Query:    8 LTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGYVASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRSIAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF 142
            L+DP+ DL  RIRNGQ   +A+I  P S+    V+DVL R+GY+        +    P F+ +++ LKY  EG PAIKRI RVSKP RR+Y  I  LP   NGLG  ILSTP+GV+   EAR  NVGGE+L  VF
Sbjct:    3 LSDPLGDLLTRIRNGQRVGKAVIETPASKLRANVLDVLKREGYIRGYETHEVK----PGFSAIKVELKYA-EGQPAIKRIDRVSKPGRRVYSGIKDLPKVYNGLGISILSTPRGVMSDVEARAANVGGEILARVF 132          
The following BLAST results are available for this feature:
BLAST of Gvermi12228.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J028_9FLOR1.510e-7473.0530S ribosomal protein S8 n=1 Tax=Gracilariopsis ch... [more]
Q7XYA5_GRIJA9.980e-5761.27Ribosome protein S8 n=1 Tax=Griffithsia japonica T... [more]
A0A1X6PKC2_PORUM2.020e-4251.08Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A3D3IVW4_9PROT1.390e-3551.8530S ribosomal protein S8 n=1 Tax=Rhodospirillaceae... [more]
A0A3M1GA32_9PROT2.800e-3551.1130S ribosomal protein S8 n=1 Tax=Alphaproteobacter... [more]
RS8_RHOCS3.970e-3551.1130S ribosomal protein S8 n=10 Tax=Alphaproteobacte... [more]
A0A1F2YRF7_9PROT3.970e-3550.3730S ribosomal protein S8 n=1 Tax=Alphaproteobacter... [more]
UPI001A9774CD7.970e-3548.8930S ribosomal protein S8 n=1 Tax=Arenibaculum pall... [more]
A0A2N3PN92_9PROT1.560e-3449.2630S ribosomal protein S8 n=6 Tax=root TaxID=1 RepI... [more]
A0A0A0D5E9_9PROT1.600e-3450.3730S ribosomal protein S8 n=5 Tax=Bacteria TaxID=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1370.30coord: 9..84
e-value: 2.3E-15
score: 58.2
NoneNo IPR availableGENE3D3.30.1490.10coord: 85..142
e-value: 1.4E-19
score: 71.3
NoneNo IPR availablePANTHERPTHR11758:SF437S RIBOSOMAL PROTEIN S8, MITOCHONDRIALcoord: 9..139
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 10..142
e-value: 5.9E-36
score: 123.2
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 9..139
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 112..129
IPR000630Ribosomal protein S8HAMAPMF_01302_BRibosomal_S8_Bcoord: 7..142
score: 24.685131
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 8..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3912893..3913321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12228.t1Gvermi12228.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3912893..3913321 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12228.t1 ID=Gvermi12228.t1|Name=Gvermi12228.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=143bp
MRGRGVLLTDPISDLFARIRNGQNAKRAIIHHPYSRFAKQVVDVLIRQGY
VASLNIIPPQSPRAPQFNQMQIALKYDNEGLPAIKRIRRVSKPSRRIYRS
IAQLPMASNGLGTWILSTPKGVLHCAEAREMNVGGEVLGEVF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
IPR035987Ribosomal_S8_sf