Gvermi12517.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12517.t1
Unique NameGvermi12517.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:6032762..6033848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM2G016958_P01
PFAMsM20_dimer,Peptidase_M20
Max annot lvl35493|Streptophyta
KEGG koko:K14664
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0008150,GO:0008152,GO:0009850,GO:0009987,GO:0010178,GO:0010210,GO:0010211,GO:0010817,GO:0012505,GO:0016787,GO:0016810,GO:0042445,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0065007,GO:0065008
Evalue1.14e-29
EggNOG OGsCOG1473@1|root,2QQEM@2759|Eukaryota,37JVC@33090|Viridiplantae,3GAU7@35493|Streptophyta,3KQN6@4447|Liliopsida,3I8AP@38820|Poales
DescriptionPeptidase dimerisation domain
COG categoryS
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12517Gvermi12517Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 6032762..6033848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12517.t1Gvermi12517.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 6032762..6033848 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12517.t1.start1Gvermi12517.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 6032762..6032764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12517.t1.CDS1Gvermi12517.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 6032762..6033691 +
Gvermi12517.t1.CDS2Gvermi12517.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 6033801..6033848 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12517.t1.exon1Gvermi12517.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 6032762..6033691 +
Gvermi12517.t1.exon2Gvermi12517.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 6033801..6033848 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12517.t1.intron1Gvermi12517.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 6033692..6033800 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12517.t1.stop1Gvermi12517.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 6033846..6033848 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12517.t1 ID=Gvermi12517.t1|Name=Gvermi12517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=326bp
MGNSSNHSHKSSTTNDFFDQHHELHKSWLQTLHDTPELGFQEVKTSQFVR
DVLNSHCGSFEVSEKTLFPTAPTAVLAVFNPTSSRADGSLKPILLRGDMD
ALPIAGPSDANAIGTSRMEGCHMPGAATNHNHNGTMRKEATADTEDSSQR
HHGCGHDGHTAMMLITAHWIHEHKDDVLRKVVIFFQPAEELRRESDNSSG
PEVVVREGLFREHHSDVHAVYGVHGGPGMPIGTFLTGRSAVMAGSGGFKI
QINGSGGHAANPGRGQTEPLLAASAIVTCAQSIIARRFEPSQAGVLAFCV
VDGLGSTAGNRICAMLSTNLTRATP*
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spliced messenger RNA

>Gvermi12517.t1 ID=Gvermi12517.t1|Name=Gvermi12517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=978bp|location=Sequence derived from alignment at ScGOVlb_3404:6032762..6033848+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAATTCGTCCAATCATTCACACAAATCCTCTACAACCAATGATTT
CTTCGATCAGCATCACGAACTGCACAAATCGTGGTTACAAACTTTGCATG
ACACTCCGGAGCTTGGGTTTCAAGAGGTCAAGACCTCTCAGTTTGTTCGG
GACGTTCTCAACTCACATTGCGGTTCGTTTGAGGTCTCTGAAAAGACTCT
GTTTCCAACCGCACCCACTGCAGTGCTTGCAGTGTTCAATCCCACATCCA
GTCGTGCAGATGGATCTCTCAAGCCTATTCTTCTCCGCGGGGACATGGAT
GCGCTGCCTATCGCTGGCCCGTCAGACGCAAATGCTATCGGTACATCTCG
GATGGAAGGTTGTCATATGCCCGGCGCTGCCACCAATCACAATCATAATG
GCACGATGCGAAAAGAAGCAACCGCCGATACAGAGGACTCATCGCAACGT
CACCACGGATGTGGTCATGATGGTCACACTGCCATGATGCTTATCACTGC
ACACTGGATCCACGAACATAAAGATGATGTTCTCCGGAAGGTGGTTATAT
TTTTTCAACCTGCAGAAGAGCTTCGTCGCGAAAGTGACAATTCTTCGGGT
CCTGAGGTTGTGGTTCGGGAAGGTCTATTTAGAGAGCACCACTCCGACGT
TCACGCCGTGTACGGCGTTCATGGTGGACCAGGTATGCCGATAGGAACGT
TTCTGACCGGACGGTCGGCGGTTATGGCCGGTTCCGGCGGATTCAAAATT
CAGATCAACGGAAGTGGCGGACACGCTGCCAATCCAGGTCGGGGGCAAAC
GGAGCCGCTTCTCGCCGCGTCTGCCATCGTAACTTGTGCACAGAGCATTA
TTGCGCGAAGATTCGAACCGAGTCAGGCTGGAGTTTTGGCTTTCTGCGTG
GTGGATGGGTTGGGATCAACTGCGGGAAATCGTATTTGTGCGATGTTGTC
TACGAACCTAACCAGGGCTACCCCGTGA
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protein sequence of Gvermi12517.t1

>Gvermi12517.t1 ID=Gvermi12517.t1|Name=Gvermi12517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=326bp
MGNSSNHSHKSSTTNDFFDQHHELHKSWLQTLHDTPELGFQEVKTSQFVR
DVLNSHCGSFEVSEKTLFPTAPTAVLAVFNPTSSRADGSLKPILLRGDMD
ALPIAGPSDANAIGTSRMEGCHMPGAATNHNHNGTMRKEATADTEDSSQR
HHGCGHDGHTAMMLITAHWIHEHKDDVLRKVVIFFQPAEELRRESDNSSG
PEVVVREGLFREHHSDVHAVYGVHGGPGMPIGTFLTGRSAVMAGSGGFKI
QINGSGGHAANPGRGQTEPLLAASAIVTCAQSIIARRFEPSQAGVLAFCV
VDGLGSTAGNRICAMLSTNLTRATP*
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mRNA from alignment at ScGOVlb_3404:6032762..6033848+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12517.t1 ID=Gvermi12517.t1|Name=Gvermi12517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1087bp|location=Sequence derived from alignment at ScGOVlb_3404:6032762..6033848+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTAATTCGTCCAATCATTCACACAAATCCTCTACAACCAATGATTT
CTTCGATCAGCATCACGAACTGCACAAATCGTGGTTACAAACTTTGCATG
ACACTCCGGAGCTTGGGTTTCAAGAGGTCAAGACCTCTCAGTTTGTTCGG
GACGTTCTCAACTCACATTGCGGTTCGTTTGAGGTCTCTGAAAAGACTCT
GTTTCCAACCGCACCCACTGCAGTGCTTGCAGTGTTCAATCCCACATCCA
GTCGTGCAGATGGATCTCTCAAGCCTATTCTTCTCCGCGGGGACATGGAT
GCGCTGCCTATCGCTGGCCCGTCAGACGCAAATGCTATCGGTACATCTCG
GATGGAAGGTTGTCATATGCCCGGCGCTGCCACCAATCACAATCATAATG
GCACGATGCGAAAAGAAGCAACCGCCGATACAGAGGACTCATCGCAACGT
CACCACGGATGTGGTCATGATGGTCACACTGCCATGATGCTTATCACTGC
ACACTGGATCCACGAACATAAAGATGATGTTCTCCGGAAGGTGGTTATAT
TTTTTCAACCTGCAGAAGAGCTTCGTCGCGAAAGTGACAATTCTTCGGGT
CCTGAGGTTGTGGTTCGGGAAGGTCTATTTAGAGAGCACCACTCCGACGT
TCACGCCGTGTACGGCGTTCATGGTGGACCAGGTATGCCGATAGGAACGT
TTCTGACCGGACGGTCGGCGGTTATGGCCGGTTCCGGCGGATTCAAAATT
CAGATCAACGGAAGTGGCGGACACGCTGCCAATCCAGGTCGGGGGCAAAC
GGAGCCGCTTCTCGCCGCGTCTGCCATCGTAACTTGTGCACAGAGCATTA
TTGCGCGAAGATTCGAACCGAGTCAGGCTGGAGTTTTGGCTTTCTGCGTG
GTGGATGGGTTGGGATCAACTGCGGGAAATGTATGTCCGAGTAAAATTGA
AGTTCGCGGTTCGATTCGAGCCTTCAACGATACGGACTGGAATTACATCT
CTGACGAACTGGCACGCATATCGACGAAAATCGGCGAAGCGTATTTGTGC
GATGTTGTCTACGAACCTAACCAGGGCTACCCCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:6032762..6033848+

>Gvermi12517.t1 ID=Gvermi12517.t1|Name=Gvermi12517.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=978bp|location=Sequence derived from alignment at ScGOVlb_3404:6032762..6033848+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTAATTCGTCCAATCATTCACACAAATCCTCTACAACCAATGATTT
CTTCGATCAGCATCACGAACTGCACAAATCGTGGTTACAAACTTTGCATG
ACACTCCGGAGCTTGGGTTTCAAGAGGTCAAGACCTCTCAGTTTGTTCGG
GACGTTCTCAACTCACATTGCGGTTCGTTTGAGGTCTCTGAAAAGACTCT
GTTTCCAACCGCACCCACTGCAGTGCTTGCAGTGTTCAATCCCACATCCA
GTCGTGCAGATGGATCTCTCAAGCCTATTCTTCTCCGCGGGGACATGGAT
GCGCTGCCTATCGCTGGCCCGTCAGACGCAAATGCTATCGGTACATCTCG
GATGGAAGGTTGTCATATGCCCGGCGCTGCCACCAATCACAATCATAATG
GCACGATGCGAAAAGAAGCAACCGCCGATACAGAGGACTCATCGCAACGT
CACCACGGATGTGGTCATGATGGTCACACTGCCATGATGCTTATCACTGC
ACACTGGATCCACGAACATAAAGATGATGTTCTCCGGAAGGTGGTTATAT
TTTTTCAACCTGCAGAAGAGCTTCGTCGCGAAAGTGACAATTCTTCGGGT
CCTGAGGTTGTGGTTCGGGAAGGTCTATTTAGAGAGCACCACTCCGACGT
TCACGCCGTGTACGGCGTTCATGGTGGACCAGGTATGCCGATAGGAACGT
TTCTGACCGGACGGTCGGCGGTTATGGCCGGTTCCGGCGGATTCAAAATT
CAGATCAACGGAAGTGGCGGACACGCTGCCAATCCAGGTCGGGGGCAAAC
GGAGCCGCTTCTCGCCGCGTCTGCCATCGTAACTTGTGCACAGAGCATTA
TTGCGCGAAGATTCGAACCGAGTCAGGCTGGAGTTTTGGCTTTCTGCGTG
GTGGATGGGTTGGGATCAACTGCGGGAAATCGTATTTGTGCGATGTTGTC
TACGAACCTAACCAGGGCTACCCCGTGA
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