Gvermi12298.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12298.t1
Unique NameGvermi12298.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4128729..4130144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog381046.XP_002553128.1
Preferred nameMCA1
PFAMsPeptidase_C14
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006515,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009987,GO:0012501,GO:0016787,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue2.13e-19
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,38EI0@33154|Opisthokonta,3NW3X@4751|Fungi,3QKCB@4890|Ascomycota,3RS6R@4891|Saccharomycetes,3RZ9H@4893|Saccharomycetaceae
Descriptionto Saccharomyces cerevisiae MCA1 (YOR197W)
COG categoryDO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12298Gvermi12298Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4128729..4130144 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12298.t1.stop1Gvermi12298.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4128729..4128731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12298.t1.CDS1Gvermi12298.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4128729..4130144 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12298.t1.exon1Gvermi12298.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4128729..4130144 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12298.t1.start1Gvermi12298.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4130142..4130144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12298.t1Gvermi12298.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4128729..4130144 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12298.t1 ID=Gvermi12298.t1|Name=Gvermi12298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=472bp
MTELPYVPNTTALPPRTPRTPPHFPPHLRFINRDSETYVSPLPSPLTNPL
TSSTPSPLCRKEYFRAPGSRSYSPGIHKGFSSQVPLSPLAKTSRRHYSAV
ASPVSNTGTPRRSKTSLETPFVQLDGLVPAVGGDSVLCNKFSSSLQAGVC
RSTSTSQASTGAEAHRRAVLIGITYAGTKNVEPLPGSAEHLALFHNLLIR
KFGFDKRNIWLLCDKPHSAAGAILFEPSQANIINAMTWLVLNSRPGDNLI
FAFCGHGLQRRNDSSKSIERCIIPSDYPTSPPITANTISSLLIGNLNMSA
NLTVLLDCRFSNKMLGLPYIHYVRRARKNNFFIDGTPEVNDKDPLFRASP
MHGITGSSRQQKEYLELKKQVAEEQRDALAATLFDKGEVVCISLGSEPRK
KLFSFSSPRGGPNLSSAFVSVMSNYDPQKSNISFQKMLVDISALVSKGQY
AFLPQLSSSYRLKIEDPVFKC*
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spliced messenger RNA

>Gvermi12298.t1 ID=Gvermi12298.t1|Name=Gvermi12298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at ScGOVlb_3404:4128729..4130144- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAACTTCCATACGTACCGAATACAACTGCTTTGCCACCGAGAAC
GCCGCGAACCCCACCCCATTTCCCGCCACACTTACGATTTATCAATCGTG
ATTCTGAAACCTATGTTTCACCATTGCCTTCACCGTTAACAAACCCACTA
ACCTCATCAACACCAAGTCCGCTCTGTAGAAAAGAATACTTCAGAGCCCC
GGGTTCACGATCATACTCACCAGGCATTCACAAGGGATTTTCTTCACAGG
TTCCACTTAGTCCGTTGGCTAAAACTTCGAGAAGACATTACAGTGCTGTT
GCATCACCCGTGTCCAATACAGGAACCCCAAGAAGATCCAAAACATCATT
AGAGACCCCTTTCGTACAATTGGATGGACTTGTACCGGCAGTAGGAGGGG
ATAGTGTTCTATGTAATAAGTTCTCAAGTTCGCTACAGGCTGGGGTTTGC
CGTTCAACTTCAACATCTCAGGCATCCACAGGAGCTGAAGCCCACAGACG
TGCCGTTCTGATTGGTATAACCTATGCGGGCACCAAAAATGTTGAGCCGT
TACCTGGATCTGCAGAACATCTTGCTCTCTTTCATAATCTCCTTATCAGG
AAATTTGGTTTCGACAAAAGAAACATTTGGCTTTTATGCGACAAGCCACA
CAGTGCAGCTGGGGCTATTCTTTTTGAACCCTCTCAAGCAAACATTATAA
ATGCAATGACATGGCTCGTTCTCAATTCCAGGCCAGGGGATAATCTCATT
TTCGCCTTTTGCGGCCACGGACTCCAGCGGCGTAATGATAGCTCTAAGTC
GATTGAACGATGCATCATCCCCTCAGATTATCCCACGTCTCCCCCGATAA
CAGCGAACACAATCTCCTCTCTTCTTATCGGTAATTTGAATATGAGTGCC
AACTTAACCGTCTTACTTGACTGTCGTTTTTCGAACAAAATGCTCGGTCT
CCCATACATTCATTATGTACGACGTGCAAGGAAAAACAATTTCTTTATAG
ACGGCACACCAGAAGTTAATGACAAAGATCCGCTTTTTCGAGCATCACCG
ATGCATGGAATCACGGGATCCTCTCGCCAGCAGAAAGAATACTTGGAGCT
TAAGAAACAAGTTGCCGAGGAACAACGAGATGCTTTGGCCGCGACACTCT
TCGACAAAGGTGAGGTGGTGTGCATAAGTTTAGGCTCAGAGCCTAGGAAG
AAGCTTTTCTCATTTTCTTCTCCTCGTGGAGGACCGAATTTGAGTTCAGC
ATTTGTGTCAGTCATGAGCAACTATGATCCTCAGAAATCCAACATTTCTT
TCCAAAAGATGCTAGTAGATATATCAGCTCTAGTTAGCAAGGGACAGTAC
GCGTTTTTACCTCAGCTCTCATCTTCGTACAGATTGAAAATCGAAGATCC
GGTATTCAAATGCTGA
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protein sequence of Gvermi12298.t1

>Gvermi12298.t1 ID=Gvermi12298.t1|Name=Gvermi12298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=472bp
MTELPYVPNTTALPPRTPRTPPHFPPHLRFINRDSETYVSPLPSPLTNPL
TSSTPSPLCRKEYFRAPGSRSYSPGIHKGFSSQVPLSPLAKTSRRHYSAV
ASPVSNTGTPRRSKTSLETPFVQLDGLVPAVGGDSVLCNKFSSSLQAGVC
RSTSTSQASTGAEAHRRAVLIGITYAGTKNVEPLPGSAEHLALFHNLLIR
KFGFDKRNIWLLCDKPHSAAGAILFEPSQANIINAMTWLVLNSRPGDNLI
FAFCGHGLQRRNDSSKSIERCIIPSDYPTSPPITANTISSLLIGNLNMSA
NLTVLLDCRFSNKMLGLPYIHYVRRARKNNFFIDGTPEVNDKDPLFRASP
MHGITGSSRQQKEYLELKKQVAEEQRDALAATLFDKGEVVCISLGSEPRK
KLFSFSSPRGGPNLSSAFVSVMSNYDPQKSNISFQKMLVDISALVSKGQY
AFLPQLSSSYRLKIEDPVFKC*
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mRNA from alignment at ScGOVlb_3404:4128729..4130144-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12298.t1 ID=Gvermi12298.t1|Name=Gvermi12298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at ScGOVlb_3404:4128729..4130144- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGAACTTCCATACGTACCGAATACAACTGCTTTGCCACCGAGAAC
GCCGCGAACCCCACCCCATTTCCCGCCACACTTACGATTTATCAATCGTG
ATTCTGAAACCTATGTTTCACCATTGCCTTCACCGTTAACAAACCCACTA
ACCTCATCAACACCAAGTCCGCTCTGTAGAAAAGAATACTTCAGAGCCCC
GGGTTCACGATCATACTCACCAGGCATTCACAAGGGATTTTCTTCACAGG
TTCCACTTAGTCCGTTGGCTAAAACTTCGAGAAGACATTACAGTGCTGTT
GCATCACCCGTGTCCAATACAGGAACCCCAAGAAGATCCAAAACATCATT
AGAGACCCCTTTCGTACAATTGGATGGACTTGTACCGGCAGTAGGAGGGG
ATAGTGTTCTATGTAATAAGTTCTCAAGTTCGCTACAGGCTGGGGTTTGC
CGTTCAACTTCAACATCTCAGGCATCCACAGGAGCTGAAGCCCACAGACG
TGCCGTTCTGATTGGTATAACCTATGCGGGCACCAAAAATGTTGAGCCGT
TACCTGGATCTGCAGAACATCTTGCTCTCTTTCATAATCTCCTTATCAGG
AAATTTGGTTTCGACAAAAGAAACATTTGGCTTTTATGCGACAAGCCACA
CAGTGCAGCTGGGGCTATTCTTTTTGAACCCTCTCAAGCAAACATTATAA
ATGCAATGACATGGCTCGTTCTCAATTCCAGGCCAGGGGATAATCTCATT
TTCGCCTTTTGCGGCCACGGACTCCAGCGGCGTAATGATAGCTCTAAGTC
GATTGAACGATGCATCATCCCCTCAGATTATCCCACGTCTCCCCCGATAA
CAGCGAACACAATCTCCTCTCTTCTTATCGGTAATTTGAATATGAGTGCC
AACTTAACCGTCTTACTTGACTGTCGTTTTTCGAACAAAATGCTCGGTCT
CCCATACATTCATTATGTACGACGTGCAAGGAAAAACAATTTCTTTATAG
ACGGCACACCAGAAGTTAATGACAAAGATCCGCTTTTTCGAGCATCACCG
ATGCATGGAATCACGGGATCCTCTCGCCAGCAGAAAGAATACTTGGAGCT
TAAGAAACAAGTTGCCGAGGAACAACGAGATGCTTTGGCCGCGACACTCT
TCGACAAAGGTGAGGTGGTGTGCATAAGTTTAGGCTCAGAGCCTAGGAAG
AAGCTTTTCTCATTTTCTTCTCCTCGTGGAGGACCGAATTTGAGTTCAGC
ATTTGTGTCAGTCATGAGCAACTATGATCCTCAGAAATCCAACATTTCTT
TCCAAAAGATGCTAGTAGATATATCAGCTCTAGTTAGCAAGGGACAGTAC
GCGTTTTTACCTCAGCTCTCATCTTCGTACAGATTGAAAATCGAAGATCC
GGTATTCAAATGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4128729..4130144-

>Gvermi12298.t1 ID=Gvermi12298.t1|Name=Gvermi12298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1416bp|location=Sequence derived from alignment at ScGOVlb_3404:4128729..4130144- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGAACTTCCATACGTACCGAATACAACTGCTTTGCCACCGAGAAC
GCCGCGAACCCCACCCCATTTCCCGCCACACTTACGATTTATCAATCGTG
ATTCTGAAACCTATGTTTCACCATTGCCTTCACCGTTAACAAACCCACTA
ACCTCATCAACACCAAGTCCGCTCTGTAGAAAAGAATACTTCAGAGCCCC
GGGTTCACGATCATACTCACCAGGCATTCACAAGGGATTTTCTTCACAGG
TTCCACTTAGTCCGTTGGCTAAAACTTCGAGAAGACATTACAGTGCTGTT
GCATCACCCGTGTCCAATACAGGAACCCCAAGAAGATCCAAAACATCATT
AGAGACCCCTTTCGTACAATTGGATGGACTTGTACCGGCAGTAGGAGGGG
ATAGTGTTCTATGTAATAAGTTCTCAAGTTCGCTACAGGCTGGGGTTTGC
CGTTCAACTTCAACATCTCAGGCATCCACAGGAGCTGAAGCCCACAGACG
TGCCGTTCTGATTGGTATAACCTATGCGGGCACCAAAAATGTTGAGCCGT
TACCTGGATCTGCAGAACATCTTGCTCTCTTTCATAATCTCCTTATCAGG
AAATTTGGTTTCGACAAAAGAAACATTTGGCTTTTATGCGACAAGCCACA
CAGTGCAGCTGGGGCTATTCTTTTTGAACCCTCTCAAGCAAACATTATAA
ATGCAATGACATGGCTCGTTCTCAATTCCAGGCCAGGGGATAATCTCATT
TTCGCCTTTTGCGGCCACGGACTCCAGCGGCGTAATGATAGCTCTAAGTC
GATTGAACGATGCATCATCCCCTCAGATTATCCCACGTCTCCCCCGATAA
CAGCGAACACAATCTCCTCTCTTCTTATCGGTAATTTGAATATGAGTGCC
AACTTAACCGTCTTACTTGACTGTCGTTTTTCGAACAAAATGCTCGGTCT
CCCATACATTCATTATGTACGACGTGCAAGGAAAAACAATTTCTTTATAG
ACGGCACACCAGAAGTTAATGACAAAGATCCGCTTTTTCGAGCATCACCG
ATGCATGGAATCACGGGATCCTCTCGCCAGCAGAAAGAATACTTGGAGCT
TAAGAAACAAGTTGCCGAGGAACAACGAGATGCTTTGGCCGCGACACTCT
TCGACAAAGGTGAGGTGGTGTGCATAAGTTTAGGCTCAGAGCCTAGGAAG
AAGCTTTTCTCATTTTCTTCTCCTCGTGGAGGACCGAATTTGAGTTCAGC
ATTTGTGTCAGTCATGAGCAACTATGATCCTCAGAAATCCAACATTTCTT
TCCAAAAGATGCTAGTAGATATATCAGCTCTAGTTAGCAAGGGACAGTAC
GCGTTTTTACCTCAGCTCTCATCTTCGTACAGATTGAAAATCGAAGATCC
GGTATTCAAATGCTGA
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