Gvermi12494.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12494.t1
Unique NameGvermi12494.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5446383..5447744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12494Gvermi12494Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5446383..5447744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12494.t1Gvermi12494.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5446383..5447744 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12494.t1.start1Gvermi12494.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5446383..5446385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12494.t1.CDS1Gvermi12494.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5446383..5446895 +
Gvermi12494.t1.CDS2Gvermi12494.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5447502..5447744 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12494.t1.exon1Gvermi12494.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5446383..5446895 +
Gvermi12494.t1.exon2Gvermi12494.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5447502..5447744 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12494.t1.intron1Gvermi12494.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5446896..5447501 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12494.t1.stop1Gvermi12494.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5447742..5447744 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12494.t1 ID=Gvermi12494.t1|Name=Gvermi12494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=252bp
MLESLKSARTSPPVLSQVAAKSATADESTFDASAMVLADSEYLSPGSAHK
IYSREFHLTRVSKIGDSKFPATKMTWERLLQDFPVRPAHQRSLVPVAFGG
ASKKIYEELSSSNLDADARKLWEMLEARLYNASQQRGQLNAFFSARWKEK
QEATEQFYARLRTQALRLPEPSLRSQTYVMSGNYDEVVSKMSLLTKSGMS
RPERVKEAKEYDNAGQRAGHRDRVCYKCRNPGDIARFCPDIKDIGAAPAQ
T*
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spliced messenger RNA

>Gvermi12494.t1 ID=Gvermi12494.t1|Name=Gvermi12494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=756bp|location=Sequence derived from alignment at ScGOVlb_3404:5446383..5447744+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGAGAGTCTCAAGTCCGCCCGTACGTCGCCACCGGTGCTTAGCCA
GGTTGCTGCTAAGAGTGCAACCGCTGATGAATCCACTTTTGATGCATCTG
CAATGGTGTTGGCAGATTCCGAGTATCTGTCACCGGGGTCAGCTCACAAG
ATTTATTCCCGTGAGTTTCACCTGACCCGCGTGAGCAAGATTGGAGACTC
CAAGTTCCCTGCTACGAAGATGACGTGGGAAAGGCTTTTACAGGACTTTC
CTGTCCGTCCCGCACATCAGAGGAGTTTGGTGCCCGTTGCATTTGGTGGC
GCGTCGAAGAAGATCTATGAAGAACTTTCGTCATCCAATCTAGATGCGGA
TGCCCGTAAGCTCTGGGAGATGCTGGAAGCTCGTCTCTACAACGCGAGTC
AGCAACGTGGACAGCTGAACGCGTTCTTCTCTGCAAGGTGGAAGGAAAAA
CAGGAGGCCACTGAGCAGTTTTATGCTCGGTTGCGTACCCAAGCTCTACG
TCTTCCGGAACCGTCGCTCCGGTCGCAGACCTACGTAATGAGCGGAAACT
ACGATGAAGTCGTATCCAAGATGTCTTTGTTGACTAAGTCGGGCATGTCT
CGTCCTGAGAGGGTCAAGGAAGCAAAGGAATACGACAACGCTGGTCAGAG
GGCGGGGCACCGTGATCGAGTTTGCTACAAGTGCCGAAATCCTGGTGATA
TCGCAAGGTTCTGCCCCGATATAAAAGATATTGGGGCCGCTCCAGCCCAG
ACGTAA
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protein sequence of Gvermi12494.t1

>Gvermi12494.t1 ID=Gvermi12494.t1|Name=Gvermi12494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=252bp
MLESLKSARTSPPVLSQVAAKSATADESTFDASAMVLADSEYLSPGSAHK
IYSREFHLTRVSKIGDSKFPATKMTWERLLQDFPVRPAHQRSLVPVAFGG
ASKKIYEELSSSNLDADARKLWEMLEARLYNASQQRGQLNAFFSARWKEK
QEATEQFYARLRTQALRLPEPSLRSQTYVMSGNYDEVVSKMSLLTKSGMS
RPERVKEAKEYDNAGQRAGHRDRVCYKCRNPGDIARFCPDIKDIGAAPAQ
T*
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mRNA from alignment at ScGOVlb_3404:5446383..5447744+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12494.t1 ID=Gvermi12494.t1|Name=Gvermi12494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at ScGOVlb_3404:5446383..5447744+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGAGAGTCTCAAGTCCGCCCGTACGTCGCCACCGGTGCTTAGCCA
GGTTGCTGCTAAGAGTGCAACCGCTGATGAATCCACTTTTGATGCATCTG
CAATGGTGTTGGCAGATTCCGAGTATCTGTCACCGGGGTCAGCTCACAAG
ATTTATTCCCGTGAGTTTCACCTGACCCGCGTGAGCAAGATTGGAGACTC
CAAGTTCCCTGCTACGAAGATGACGTGGGAAAGGCTTTTACAGGACTTTC
CTGTCCGTCCCGCACATCAGAGGAGTTTGGTGCCCGTTGCATTTGGTGGC
GCGTCGAAGAAGATCTATGAAGAACTTTCGTCATCCAATCTAGATGCGGA
TGCCCGTAAGCTCTGGGAGATGCTGGAAGCTCGTCTCTACAACGCGAGTC
AGCAACGTGGACAGCTGAACGCGTTCTTCTCTGCAAGGTGGAAGGAAAAA
CAGGAGGCCACTGAGCAGTTTTATGCTCGGTTGCGTACCCAAGCTCTACG
TCTTCCGGAACCGGTatctgaaaaggtgctgatgaaccttttggtggtac
cgtcagttctcttttcaaggtagtagcgcacaacgtccgttaggagtttt
tgttgactccaaaggtacgagttcctcaaggtggtctccagtaatcgctg
tcgcgagccgggggagttcttaaaggggattcgcaaacaccaagcgcaag
gggaggttcactaggtggactatgcttttataggtgctgctacggggcga
cctggggatcagtggcttagaaaccttagcatgatcgacgagagtctcca
accagaaaaatagatgcagactcaagggttcttggtttacttccccagag
gttgagctcgaccggcagattaggtatcaagccaggagcccttctcggca
ggtcgcactactgtagtaattacatgcacaaatcaactaaaatgaatata
aattttaccgtcccttaaggatactgtagcgcacgtgggtcgaattatgc
accacgtgactcagataataaaatacgagccctctttaggaatatcacgc
cataaagccccaccaccacattaccttaggacccactgtactacagcttt
catcgatgGCCTACCCCAGTCGCTCCGGTCGCAGACCTACGTAATGAGCG
GAAACTACGATGAAGTCGTATCCAAGATGTCTTTGTTGACTAAGTCGGGC
ATGTCTCGTCCTGAGAGGGTCAAGGAAGCAAAGGAATACGACAACGCTGG
TCAGAGGGCGGGGCACCGTGATCGAGTTTGCTACAAGTGCCGAAATCCTG
GTGATATCGCAAGGTTCTGCCCCGATATAAAAGATATTGGGGCCGCTCCA
GCCCAGACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5446383..5447744+

>Gvermi12494.t1 ID=Gvermi12494.t1|Name=Gvermi12494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=756bp|location=Sequence derived from alignment at ScGOVlb_3404:5446383..5447744+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGAGAGTCTCAAGTCCGCCCGTACGTCGCCACCGGTGCTTAGCCA
GGTTGCTGCTAAGAGTGCAACCGCTGATGAATCCACTTTTGATGCATCTG
CAATGGTGTTGGCAGATTCCGAGTATCTGTCACCGGGGTCAGCTCACAAG
ATTTATTCCCGTGAGTTTCACCTGACCCGCGTGAGCAAGATTGGAGACTC
CAAGTTCCCTGCTACGAAGATGACGTGGGAAAGGCTTTTACAGGACTTTC
CTGTCCGTCCCGCACATCAGAGGAGTTTGGTGCCCGTTGCATTTGGTGGC
GCGTCGAAGAAGATCTATGAAGAACTTTCGTCATCCAATCTAGATGCGGA
TGCCCGTAAGCTCTGGGAGATGCTGGAAGCTCGTCTCTACAACGCGAGTC
AGCAACGTGGACAGCTGAACGCGTTCTTCTCTGCAAGGTGGAAGGAAAAA
CAGGAGGCCACTGAGCAGTTTTATGCTCGGTTGCGTACCCAAGCTCTACG
TCTTCCGGAACCGTCGCTCCGGTCGCAGACCTACGTAATGAGCGGAAACT
ACGATGAAGTCGTATCCAAGATGTCTTTGTTGACTAAGTCGGGCATGTCT
CGTCCTGAGAGGGTCAAGGAAGCAAAGGAATACGACAACGCTGGTCAGAG
GGCGGGGCACCGTGATCGAGTTTGCTACAAGTGCCGAAATCCTGGTGATA
TCGCAAGGTTCTGCCCCGATATAAAAGATATTGGGGCCGCTCCAGCCCAG
ACGTAA
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