Gvermi12369.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12369.t1
Unique NameGvermi12369.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4385661..4386941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK067CT
PFAMsMIP
Max annot lvl2759|Eukaryota
KEGG koko:K09867,ko:K09868,ko:K09873,ko:K09884
KEGG TC1.A.8,1.A.8.10,1.A.8.8
KEGG Pathwayko04970,map04970
Evalue1.38e-33
EggNOG OGsCOG0580@1|root,KOG0223@2759|Eukaryota
Descriptionwater channel activity
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12369Gvermi12369Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4385661..4386941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12369.t1Gvermi12369.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4385661..4386941 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12369.t1.start1Gvermi12369.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4385661..4385663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12369.t1.CDS1Gvermi12369.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4385661..4386383 +
Gvermi12369.t1.CDS2Gvermi12369.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4386468..4386653 +
Gvermi12369.t1.CDS3Gvermi12369.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4386777..4386941 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12369.t1.exon1Gvermi12369.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4385661..4386383 +
Gvermi12369.t1.exon2Gvermi12369.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4386468..4386653 +
Gvermi12369.t1.exon3Gvermi12369.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4386777..4386941 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12369.t1.intron1Gvermi12369.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4386384..4386467 +
Gvermi12369.t1.intron2Gvermi12369.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4386654..4386776 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12369.t1.stop1Gvermi12369.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4386939..4386941 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12369.t1 ID=Gvermi12369.t1|Name=Gvermi12369.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=358bp
MSISKEPTERTALLENKPKTEGQTPPPVPEEQMPGLVSRSKPLDARVIFG
EFLCTFLFVYLSVTSTQQAPLANTLNNACIIAALAASFMPVSGAHLNPAV
TLALLVTDRAPLSRSIVFVAVQLLASISACLLARVLGVAIVFEGVTGGGT
EFVRAFFAEFIPMFIIVMVVFQTAVATEEEGGVGAKIAALYIGMAVLACA
GTFNGFFNPARAFGPALVSGVMDGQWVYWVGPLTGAVTAAFMSEHIFIAP
ATGRNPKGLLSFLGRKTSNAGNNLKNYGIAGLVAYGIMNTLYYGTVFSFM
LFRVGLDSGASGFARAWVVTWSLSQVTKPLRLIASIALAPFVDRFLKGRR
NTKKSDE*
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spliced messenger RNA

>Gvermi12369.t1 ID=Gvermi12369.t1|Name=Gvermi12369.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_3404:4385661..4386941+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATATCAAAAGAGCCAACAGAGCGAACCGCACTCTTGGAAAACAA
ACCCAAGACTGAAGGGCAAACGCCGCCTCCAGTGCCTGAGGAACAGATGC
CCGGTCTCGTGTCTCGATCCAAGCCCCTCGATGCTCGCGTAATCTTTGGA
GAGTTTCTGTGCACGTTTTTGTTTGTCTATCTCAGCGTGACGTCAACCCA
ACAAGCCCCGCTCGCAAACACCCTCAACAACGCCTGCATTATCGCAGCCC
TGGCGGCTTCTTTCATGCCCGTCAGCGGAGCCCATTTGAACCCGGCCGTC
ACCCTGGCGCTGTTGGTCACTGATCGCGCACCACTGTCGCGGTCTATTGT
TTTTGTTGCGGTGCAGCTCTTGGCTTCCATATCAGCATGTTTACTTGCGC
GAGTTCTTGGCGTTGCGATAGTTTTTGAGGGCGTAACCGGAGGCGGGACT
GAATTCGTGCGAGCATTTTTCGCCGAGTTTATACCAATGTTCATTATTGT
CATGGTAGTCTTCCAGACAGCAGTTGCCACAGAAGAGGAAGGAGGCGTCG
GAGCCAAGATAGCCGCATTGTACATCGGCATGGCGGTGTTAGCATGTGCT
GGAACATTCAATGGATTCTTCAATCCTGCCAGGGCGTTTGGACCGGCTTT
GGTTTCGGGCGTTATGGATGGGCAGTGGGTTTATTGGGTGGGTCCCCTGA
CAGGGGCAGTGACGGCAGCATTCATGAGTGAACACATATTTATTGCGCCG
GCGACGGGAAGAAATCCAAAAGGCTTATTGAGTTTCTTGGGTCGTAAAAC
GTCCAATGCGGGAAACAACCTGAAGAATTATGGTATCGCAGGACTGGTGG
CATACGGCATCATGAACACTCTTTACTATGGAACTGTGTTTTCATTCATG
TTATTCAGGGTAGGATTGGACAGTGGCGCCAGTGGTTTTGCCCGTGCATG
GGTAGTCACATGGTCATTGTCACAAGTGACCAAACCATTAAGGCTTATTG
CGAGCATTGCTTTGGCGCCATTTGTGGATCGCTTTTTGAAGGGGCGTCGA
AACACGAAGAAAAGTGACGAGTAG
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protein sequence of Gvermi12369.t1

>Gvermi12369.t1 ID=Gvermi12369.t1|Name=Gvermi12369.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=358bp
MSISKEPTERTALLENKPKTEGQTPPPVPEEQMPGLVSRSKPLDARVIFG
EFLCTFLFVYLSVTSTQQAPLANTLNNACIIAALAASFMPVSGAHLNPAV
TLALLVTDRAPLSRSIVFVAVQLLASISACLLARVLGVAIVFEGVTGGGT
EFVRAFFAEFIPMFIIVMVVFQTAVATEEEGGVGAKIAALYIGMAVLACA
GTFNGFFNPARAFGPALVSGVMDGQWVYWVGPLTGAVTAAFMSEHIFIAP
ATGRNPKGLLSFLGRKTSNAGNNLKNYGIAGLVAYGIMNTLYYGTVFSFM
LFRVGLDSGASGFARAWVVTWSLSQVTKPLRLIASIALAPFVDRFLKGRR
NTKKSDE*
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mRNA from alignment at ScGOVlb_3404:4385661..4386941+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12369.t1 ID=Gvermi12369.t1|Name=Gvermi12369.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1281bp|location=Sequence derived from alignment at ScGOVlb_3404:4385661..4386941+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATATCAAAAGAGCCAACAGAGCGAACCGCACTCTTGGAAAACAA
ACCCAAGACTGAAGGGCAAACGCCGCCTCCAGTGCCTGAGGAACAGATGC
CCGGTCTCGTGTCTCGATCCAAGCCCCTCGATGCTCGCGTAATCTTTGGA
GAGTTTCTGTGCACGTTTTTGTTTGTCTATCTCAGCGTGACGTCAACCCA
ACAAGCCCCGCTCGCAAACACCCTCAACAACGCCTGCATTATCGCAGCCC
TGGCGGCTTCTTTCATGCCCGTCAGCGGAGCCCATTTGAACCCGGCCGTC
ACCCTGGCGCTGTTGGTCACTGATCGCGCACCACTGTCGCGGTCTATTGT
TTTTGTTGCGGTGCAGCTCTTGGCTTCCATATCAGCATGTTTACTTGCGC
GAGTTCTTGGCGTTGCGATAGTTTTTGAGGGCGTAACCGGAGGCGGGACT
GAATTCGTGCGAGCATTTTTCGCCGAGTTTATACCAATGTTCATTATTGT
CATGGTAGTCTTCCAGACAGCAGTTGCCACAGAAGAGGAAGGAGGCGTCG
GAGCCAAGATAGCCGCATTGTACATCGGCATGGCGGTGTTAGCATGTGCT
GGAACATTCAATGGATTCTTCAATCCTGCCAGGGCGTTTGGACCGGCTTT
GGTTTCGGGCGTTATGGATGGGCAGTGGGTTTATTGGGTGGGTCCCCTGA
CAGGGGCAGTGACGGCAGCATTCGTAAGTCATAGTTTTCTATATCCGTTG
TGGTCGAAGCCGGCGATAGTGCGTATGCTAACAAATACCATTTTTATGCT
CAACCAGATGAGTGAACACATATTTATTGCGCCGGCGACGGGAAGAAATC
CAAAAGGCTTATTGAGTTTCTTGGGTCGTAAAACGTCCAATGCGGGAAAC
AACCTGAAGAATTATGGTATCGCAGGACTGGTGGCATACGGCATCATGAA
CACTCTTTACTATGGAACTGTGTTTTCATTCATGTTATTCAGGGTATGCT
AAGAACGCGATGATTAATGCTTATCTTGCCCATCAAGTGTGAAGAGTGGA
ATGTTTTCATTGCCTAACATGATTGTACAATACAATTTAAATGTGTATGA
ATTTTTCTGAGCGTAGGTAGGATTGGACAGTGGCGCCAGTGGTTTTGCCC
GTGCATGGGTAGTCACATGGTCATTGTCACAAGTGACCAAACCATTAAGG
CTTATTGCGAGCATTGCTTTGGCGCCATTTGTGGATCGCTTTTTGAAGGG
GCGTCGAAACACGAAGAAAAGTGACGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4385661..4386941+

>Gvermi12369.t1 ID=Gvermi12369.t1|Name=Gvermi12369.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1074bp|location=Sequence derived from alignment at ScGOVlb_3404:4385661..4386941+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATATCAAAAGAGCCAACAGAGCGAACCGCACTCTTGGAAAACAA
ACCCAAGACTGAAGGGCAAACGCCGCCTCCAGTGCCTGAGGAACAGATGC
CCGGTCTCGTGTCTCGATCCAAGCCCCTCGATGCTCGCGTAATCTTTGGA
GAGTTTCTGTGCACGTTTTTGTTTGTCTATCTCAGCGTGACGTCAACCCA
ACAAGCCCCGCTCGCAAACACCCTCAACAACGCCTGCATTATCGCAGCCC
TGGCGGCTTCTTTCATGCCCGTCAGCGGAGCCCATTTGAACCCGGCCGTC
ACCCTGGCGCTGTTGGTCACTGATCGCGCACCACTGTCGCGGTCTATTGT
TTTTGTTGCGGTGCAGCTCTTGGCTTCCATATCAGCATGTTTACTTGCGC
GAGTTCTTGGCGTTGCGATAGTTTTTGAGGGCGTAACCGGAGGCGGGACT
GAATTCGTGCGAGCATTTTTCGCCGAGTTTATACCAATGTTCATTATTGT
CATGGTAGTCTTCCAGACAGCAGTTGCCACAGAAGAGGAAGGAGGCGTCG
GAGCCAAGATAGCCGCATTGTACATCGGCATGGCGGTGTTAGCATGTGCT
GGAACATTCAATGGATTCTTCAATCCTGCCAGGGCGTTTGGACCGGCTTT
GGTTTCGGGCGTTATGGATGGGCAGTGGGTTTATTGGGTGGGTCCCCTGA
CAGGGGCAGTGACGGCAGCATTCATGAGTGAACACATATTTATTGCGCCG
GCGACGGGAAGAAATCCAAAAGGCTTATTGAGTTTCTTGGGTCGTAAAAC
GTCCAATGCGGGAAACAACCTGAAGAATTATGGTATCGCAGGACTGGTGG
CATACGGCATCATGAACACTCTTTACTATGGAACTGTGTTTTCATTCATG
TTATTCAGGGTAGGATTGGACAGTGGCGCCAGTGGTTTTGCCCGTGCATG
GGTAGTCACATGGTCATTGTCACAAGTGACCAAACCATTAAGGCTTATTG
CGAGCATTGCTTTGGCGCCATTTGTGGATCGCTTTTTGAAGGGGCGTCGA
AACACGAAGAAAAGTGACGAGTAG
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