Gvermi12334.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12334.t1
Unique NameGvermi12334.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4260418..4261146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog33178.CADATEAP00003142
Preferred nameTCB2
PFAMsC2
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0005933,GO:0005938,GO:0006996,GO:0007029,GO:0008150,GO:0008289,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0019216,GO:0019220,GO:0019222,GO:0022406,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032541,GO:0035303,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0050789,GO:0050794,GO:0051174,GO:0051179,GO:0051286,GO:0051640,GO:0051641,GO:0051643,GO:0060255,GO:0060304,GO:0061024,GO:0061817,GO:0065007,GO:0071782,GO:0071840,GO:0071944,GO:0080090,GO:0090158,GO:0097708,GO:0098827,GO:0099568,GO:0140056,GO:1903725
Evalue0.000147
EggNOG OGsCOG5038@1|root,KOG1012@2759|Eukaryota,38DXC@33154|Opisthokonta,3NU87@4751|Fungi,3QJI2@4890|Ascomycota,20FBI@147545|Eurotiomycetes,3S3U2@5042|Eurotiales
DescriptionMembrane bound C2 domain protein (Vp115)
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12334Gvermi12334Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4260418..4261146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12334.t1.start1Gvermi12334.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4260418..4260420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12334.t1.CDS1Gvermi12334.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4260418..4261146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12334.t1.exon1Gvermi12334.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4260418..4261146 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12334.t1.stop1Gvermi12334.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4261144..4261146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12334.t1Gvermi12334.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4260418..4261146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12334.t1 ID=Gvermi12334.t1|Name=Gvermi12334.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=243bp
MLTITIHSARDLRNADDGEGEQSDPYVLVCFDNKKDQELGRTPTVQNSQS
PTWDHEIQVDVAKHVQAAVDSGLDEPNMITFCVYDDDETESEPIGVAGIS
FAELVKKGKIKEQELPVFLGEGFITVSVSMKKVKKSTMLTNDAMVKIAGG
VAGAAALGIASGYLYNRYQKKKERLEDREGEEEVGEEEVVVAIEKPATGL
AYGYNEDSDDDDDENKGQMKRWWEMEDENDDDDEEERWGDAE*
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spliced messenger RNA

>Gvermi12334.t1 ID=Gvermi12334.t1|Name=Gvermi12334.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:4260418..4261146+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACCATTACTATTCATTCTGCGCGCGATCTGCGCAACGCCGACGA
TGGCGAGGGTGAACAATCTGATCCCTATGTCCTGGTTTGCTTCGATAACA
AGAAAGACCAGGAGCTAGGCCGCACACCCACTGTACAGAACTCGCAAAGC
CCCACGTGGGATCACGAAATTCAGGTGGATGTGGCCAAGCACGTGCAGGC
CGCCGTGGACAGCGGGCTCGACGAGCCCAACATGATCACCTTTTGCGTCT
ATGATGATGACGAGACCGAATCAGAGCCGATCGGCGTTGCGGGCATTTCC
TTTGCCGAGCTTGTCAAAAAAGGTAAGATCAAGGAACAGGAGCTCCCCGT
TTTCCTGGGCGAAGGATTCATCACTGTCAGTGTGAGCATGAAGAAAGTCA
AAAAGAGCACCATGCTTACCAACGATGCCATGGTAAAGATTGCCGGTGGC
GTTGCTGGAGCCGCCGCCCTCGGCATCGCCAGCGGATATTTGTACAACCG
CTACCagaagaagaaggagagactggaagatagggagggagaagaagagg
tgggagaagaagaGGTGGTTGTCGCAATTGAGAAACCAGCCACGGGTTTG
GCATACGGTTACAATGAAGACAGCGATGACGACGATGACGAGAATAAAGG
CCAGATGAAGAGGTGGTGGGAAATGGAGGATGAAAACGATGACGACGATG
AGGAAGAACGTTGGGGTGATGCCGAGTAG
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protein sequence of Gvermi12334.t1

>Gvermi12334.t1 ID=Gvermi12334.t1|Name=Gvermi12334.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=243bp
MLTITIHSARDLRNADDGEGEQSDPYVLVCFDNKKDQELGRTPTVQNSQS
PTWDHEIQVDVAKHVQAAVDSGLDEPNMITFCVYDDDETESEPIGVAGIS
FAELVKKGKIKEQELPVFLGEGFITVSVSMKKVKKSTMLTNDAMVKIAGG
VAGAAALGIASGYLYNRYQKKKERLEDREGEEEVGEEEVVVAIEKPATGL
AYGYNEDSDDDDDENKGQMKRWWEMEDENDDDDEEERWGDAE*
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mRNA from alignment at ScGOVlb_3404:4260418..4261146+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12334.t1 ID=Gvermi12334.t1|Name=Gvermi12334.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:4260418..4261146+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCACCATTACTATTCATTCTGCGCGCGATCTGCGCAACGCCGACGA
TGGCGAGGGTGAACAATCTGATCCCTATGTCCTGGTTTGCTTCGATAACA
AGAAAGACCAGGAGCTAGGCCGCACACCCACTGTACAGAACTCGCAAAGC
CCCACGTGGGATCACGAAATTCAGGTGGATGTGGCCAAGCACGTGCAGGC
CGCCGTGGACAGCGGGCTCGACGAGCCCAACATGATCACCTTTTGCGTCT
ATGATGATGACGAGACCGAATCAGAGCCGATCGGCGTTGCGGGCATTTCC
TTTGCCGAGCTTGTCAAAAAAGGTAAGATCAAGGAACAGGAGCTCCCCGT
TTTCCTGGGCGAAGGATTCATCACTGTCAGTGTGAGCATGAAGAAAGTCA
AAAAGAGCACCATGCTTACCAACGATGCCATGGTAAAGATTGCCGGTGGC
GTTGCTGGAGCCGCCGCCCTCGGCATCGCCAGCGGATATTTGTACAACCG
CTACCagaagaagaaggagagactggaagatagggagggagaagaagagg
tgggagaagaagaGGTGGTTGTCGCAATTGAGAAACCAGCCACGGGTTTG
GCATACGGTTACAATGAAGACAGCGATGACGACGATGACGAGAATAAAGG
CCAGATGAAGAGGTGGTGGGAAATGGAGGATGAAAACGATGACGACGATG
AGGAAGAACGTTGGGGTGATGCCGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4260418..4261146+

>Gvermi12334.t1 ID=Gvermi12334.t1|Name=Gvermi12334.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:4260418..4261146+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCACCATTACTATTCATTCTGCGCGCGATCTGCGCAACGCCGACGA
TGGCGAGGGTGAACAATCTGATCCCTATGTCCTGGTTTGCTTCGATAACA
AGAAAGACCAGGAGCTAGGCCGCACACCCACTGTACAGAACTCGCAAAGC
CCCACGTGGGATCACGAAATTCAGGTGGATGTGGCCAAGCACGTGCAGGC
CGCCGTGGACAGCGGGCTCGACGAGCCCAACATGATCACCTTTTGCGTCT
ATGATGATGACGAGACCGAATCAGAGCCGATCGGCGTTGCGGGCATTTCC
TTTGCCGAGCTTGTCAAAAAAGGTAAGATCAAGGAACAGGAGCTCCCCGT
TTTCCTGGGCGAAGGATTCATCACTGTCAGTGTGAGCATGAAGAAAGTCA
AAAAGAGCACCATGCTTACCAACGATGCCATGGTAAAGATTGCCGGTGGC
GTTGCTGGAGCCGCCGCCCTCGGCATCGCCAGCGGATATTTGTACAACCG
CTACCagaagaagaaggagagactggaagatagggagggagaagaagagg
tgggagaagaagaGGTGGTTGTCGCAATTGAGAAACCAGCCACGGGTTTG
GCATACGGTTACAATGAAGACAGCGATGACGACGATGACGAGAATAAAGG
CCAGATGAAGAGGTGGTGGGAAATGGAGGATGAAAACGATGACGACGATG
AGGAAGAACGTTGGGGTGATGCCGAGTAG
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