Gvermi12400.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male
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Overview
Homology
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A2V3IPV7_9FLOR (THO complex subunit 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV7_9FLOR) HSP 1 Score: 417 bits (1072), Expect = 7.990e-145 Identity = 222/291 (76.29%), Postives = 232/291 (79.73%), Query Frame = 0
Query: 1 MLEHHDSXXXXXXYPSSFRRRPIVVRDPKTGETRLVGGGNRRPS---PGFPPPXXXXXQXAPSPYRYRSGVDADYDRRPNAYSSFDDQGRAPIMKIVSGYRGRQIVVRDPSRRMQPPAPAQGANLGVRGGVRKNYYDRRGTRSSPYSEEYEEDRRADYFEEENDGRLYSHGRDAEFERDHHMNEYERGFEAPHGYYRRNRSDVQNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL 288
ML+HHDS +PSSFRRRPIVVRDPKTGETRLVGGG P+ P F Q PS YRYRSG DADYDR+ N Y FDDQGRAPIMKIVSGYRGRQIVVRDPSRR QPPA QGANLGVRGGVRKNYYDR+GTRSSPYSEEYE+DRR DY DH MN+Y+R +E HGYYRRNRSDVQNDDEDL GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDR+GNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPM LSMGNGL
Sbjct: 6 MLDHHDSAPPPT-HPSSFRRRPIVVRDPKTGETRLVGGGPPGPAARRPNFST-ASAPSQPPPSGYRYRSGFDADYDRQQNPYPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRRPQPPAQPQGANLGVRGGVRKNYYDRKGTRSSPYSEEYEDDRRPDYXXXXXXXXXXXXXXXXXXXXDHRMNDYDRPYEGQHGYYRRNRSDVQNDDEDLTGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDRDGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL 294
BLAST of Gvermi12400.t1 vs. uniprot
Match: R7Q7Q7_CHOCR (THO complex subunit 4-like n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Q7_CHOCR) HSP 1 Score: 238 bits (608), Expect = 1.030e-73 Identity = 157/294 (53.40%), Postives = 185/294 (62.93%), Query Frame = 0
Query: 17 SFRRRPIVVRDPKTGETRLVGGGNRRPSPGFPPPXXXXXQXAPSPYRYRSGVDADYDRRPNAYSSFDDQGRAPIMKIVSGYRGRQIVVRDPSRRMQP---PAPAQGANLGVRGG-VRK-NYYDRRGTRSSPYSEEYEEDRR----ADYFEE-ENDGRLYSHGRDAEFERDHHMNEYERG-FEAPHGY--------YRRNRSDVQND---DEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL 288
++RRRPIVVRDPKTG+TR++ GG++R + Y +G R + + F+D AP++KIVSGYRGRQIVVRDP++R P G LGVRGG VRK NYYDRRG R + YS E D+R A Y+E+ E D R+Y GRD +Y+ A HGY Y RN + N +DL GKVV+VDNLSDDVTT GLADLF MVG VKELRLLYDR+GNPNGSADIVFQ RADAE AIK+L NVPLNNRPM LSMGNGL
Sbjct: 80 AYRRRPIVVRDPKTGDTRVIQGGHQRGA------------SVGVGVTYGNGAARGGYRGMDDAAEFED---APVVKIVSGYRGRQIVVRDPAKRGATDINPQHVAGGPLGVRGGGVRKTNYYDRRGPRDTSYSPERYGDKRSGRGAPYYEDDEEDRRMYGRGRD----------QYDGSQMVAAHGYGDSRYDRDYYRNANAGHNGVPAHDDLTGKVVYVDNLSDDVTTRGLADLFSMVGTVKELRLLYDRQGNPNGSADIVFQHRADAEEAIKSLHNVPLNNRPMRLSMGNGL 348
BLAST of Gvermi12400.t1 vs. uniprot
Match: UPI00053B2972 (THO complex subunit 4C-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B2972) HSP 1 Score: 69.3 bits (168), Expect = 5.510e-10 Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0
Query: 209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNG 287
G V++ NL VT + +L+ +G +K + +DR G PNGSA++V+ RR+DA A+K +NV L+ RPM L + G
Sbjct: 103 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAVHFDRNGRPNGSAEVVYMRRSDAMLAMKKYNNVLLDGRPMRLEILGG 181
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A8J2NV81_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2NV81_9HEXA) HSP 1 Score: 67.4 bits (163), Expect = 2.020e-9 Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query: 212 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGN 286
+ + NL V+ + +LFG VG ++ + YDR G G AD+ F+RR DA+AAI+ D VPL+ RPM +S N
Sbjct: 112 ITISNLHYGVSDADIIELFGEVGNIRYASVHYDRSGRSMGKADVTFERRVDAQAAIQQYDGVPLDGRPMAISWAN 186
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A0M0JT49_9EUKA (Tho complex subunit 4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JT49_9EUKA) HSP 1 Score: 67.4 bits (163), Expect = 2.340e-9 Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL 288
G V V NL+ +VT+ + +LFG +GA+K + LL +G+ G A +VF+R+ADAE A++ + VPL+ RP+ +S+ + L
Sbjct: 85 GTTVKVANLAFNVTSEDIEELFGEIGALKSVSLLTKEDGSSRGMALVVFKRKADAETALEKYNGVPLDGRPLKISLQSNL 164
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A834LPE5_RHOSS (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834LPE5_RHOSS) HSP 1 Score: 66.6 bits (161), Expect = 3.200e-9 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0
Query: 209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
G +F+ NL V+ + +LF VG VK + YDR G G+A++VF RR DAEAA+K +NV L+ +PM + +
Sbjct: 93 GTKLFISNLDYGVSGEDVKELFAEVGDVKRYSIHYDRSGRSKGTAEVVFSRRKDAEAAVKRYNNVQLDGKPMKIEI 168
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A2I4DVX9_JUGRE (THO complex subunit 4D-like n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DVX9_JUGRE) HSP 1 Score: 66.2 bits (160), Expect = 6.620e-9 Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 0
Query: 209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
G +++ NL VT + +LF +G +K + YD+ G PNGSA++V+ RR+DA AA+K +NV L+ +PM + +
Sbjct: 95 GTKLYISNLDYGVTNEDIRELFCEIGDLKRYAVHYDKNGRPNGSAEVVYTRRSDAVAALKRYNNVLLDGKPMRIEI 170
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A396IQW2_MEDTR (Putative chromatin target of PRMT1 protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IQW2_MEDTR) HSP 1 Score: 64.3 bits (155), Expect = 1.250e-8 Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 0
Query: 212 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
++V NL VT + +LF +G +K + YD+ G+P GSA++V+ RR+DA AA+K +NV L+ +PM + +
Sbjct: 31 LYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEI 103
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A834HD54_RHOSS (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834HD54_RHOSS) HSP 1 Score: 64.7 bits (156), Expect = 1.330e-8 Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 0
Query: 209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
G ++V NL V+ + +LF VG +K + YDR G G+A++VF RR DA+AA+K +NV L+ +PM + +
Sbjct: 82 GTKLYVSNLDYGVSNDDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRQDAQAAVKRYNNVQLDGKPMKIEV 157
BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A7J0GR35_9ERIC (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0GR35_9ERIC) HSP 1 Score: 63.5 bits (153), Expect = 1.570e-8 Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0
Query: 209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
G +++ NL V+ + +LF VG +K + YDR G G+A+IV+ RR DA+AA+K +NV L+ +PM + +
Sbjct: 81 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEIVYSRRQDAQAAVKRYNNVQLDGKPMKIEI 156 The following BLAST results are available for this feature:
BLAST of Gvermi12400.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gvermi12400.t1 ID=Gvermi12400.t1|Name=Gvermi12400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=289bpback to top |