Gvermi12400.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12400.t1
Unique Name	Gvermi12400.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	289

Homology

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A2V3IPV7_9FLOR (THO complex subunit 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV7_9FLOR)

HSP 1 Score: 417 bits (1072), Expect = 7.990e-145
Identity = 222/291 (76.29%), Postives = 232/291 (79.73%), Query Frame = 0

Query:    1 MLEHHDSXXXXXXYPSSFRRRPIVVRDPKTGETRLVGGGNRRPS---PGFPPPXXXXXQXAPSPYRYRSGVDADYDRRPNAYSSFDDQGRAPIMKIVSGYRGRQIVVRDPSRRMQPPAPAQGANLGVRGGVRKNYYDRRGTRSSPYSEEYEEDRRADYFEEENDGRLYSHGRDAEFERDHHMNEYERGFEAPHGYYRRNRSDVQNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL 288
            ML+HHDS      +PSSFRRRPIVVRDPKTGETRLVGGG   P+   P F        Q  PS YRYRSG DADYDR+ N Y  FDDQGRAPIMKIVSGYRGRQIVVRDPSRR QPPA  QGANLGVRGGVRKNYYDR+GTRSSPYSEEYE+DRR DY                    DH MN+Y+R +E  HGYYRRNRSDVQNDDEDL GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDR+GNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPM LSMGNGL
Sbjct:    6 MLDHHDSAPPPT-HPSSFRRRPIVVRDPKTGETRLVGGGPPGPAARRPNFST-ASAPSQPPPSGYRYRSGFDADYDRQQNPYPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRRPQPPAQPQGANLGVRGGVRKNYYDRKGTRSSPYSEEYEDDRRPDYXXXXXXXXXXXXXXXXXXXXDHRMNDYDRPYEGQHGYYRRNRSDVQNDDEDLTGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDRDGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL 294

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BLAST of Gvermi12400.t1 vs. uniprot
Match: R7Q7Q7_CHOCR (THO complex subunit 4-like n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Q7_CHOCR)

HSP 1 Score: 238 bits (608), Expect = 1.030e-73
Identity = 157/294 (53.40%), Postives = 185/294 (62.93%), Query Frame = 0

Query:   17 SFRRRPIVVRDPKTGETRLVGGGNRRPSPGFPPPXXXXXQXAPSPYRYRSGVDADYDRRPNAYSSFDDQGRAPIMKIVSGYRGRQIVVRDPSRRMQP---PAPAQGANLGVRGG-VRK-NYYDRRGTRSSPYSEEYEEDRR----ADYFEE-ENDGRLYSHGRDAEFERDHHMNEYERG-FEAPHGY--------YRRNRSDVQND---DEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL 288
            ++RRRPIVVRDPKTG+TR++ GG++R +                   Y +G      R  +  + F+D   AP++KIVSGYRGRQIVVRDP++R      P    G  LGVRGG VRK NYYDRRG R + YS E   D+R    A Y+E+ E D R+Y  GRD          +Y+     A HGY        Y RN +   N     +DL GKVV+VDNLSDDVTT GLADLF MVG VKELRLLYDR+GNPNGSADIVFQ RADAE AIK+L NVPLNNRPM LSMGNGL
Sbjct:   80 AYRRRPIVVRDPKTGDTRVIQGGHQRGA------------SVGVGVTYGNGAARGGYRGMDDAAEFED---APVVKIVSGYRGRQIVVRDPAKRGATDINPQHVAGGPLGVRGGGVRKTNYYDRRGPRDTSYSPERYGDKRSGRGAPYYEDDEEDRRMYGRGRD----------QYDGSQMVAAHGYGDSRYDRDYYRNANAGHNGVPAHDDLTGKVVYVDNLSDDVTTRGLADLFSMVGTVKELRLLYDRQGNPNGSADIVFQHRADAEEAIKSLHNVPLNNRPMRLSMGNGL 348

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BLAST of Gvermi12400.t1 vs. uniprot
Match: UPI00053B2972 (THO complex subunit 4C-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B2972)

HSP 1 Score: 69.3 bits (168), Expect = 5.510e-10
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0

Query:  209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNG 287
            G  V++ NL   VT   + +L+  +G +K   + +DR G PNGSA++V+ RR+DA  A+K  +NV L+ RPM L +  G
Sbjct:  103 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAVHFDRNGRPNGSAEVVYMRRSDAMLAMKKYNNVLLDGRPMRLEILGG 181

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A8J2NV81_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2NV81_9HEXA)

HSP 1 Score: 67.4 bits (163), Expect = 2.020e-9
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0

Query:  212 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGN 286
            + + NL   V+   + +LFG VG ++   + YDR G   G AD+ F+RR DA+AAI+  D VPL+ RPM +S  N
Sbjct:  112 ITISNLHYGVSDADIIELFGEVGNIRYASVHYDRSGRSMGKADVTFERRVDAQAAIQQYDGVPLDGRPMAISWAN 186

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A0M0JT49_9EUKA (Tho complex subunit 4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JT49_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 2.340e-9
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query:  209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL 288
            G  V V NL+ +VT+  + +LFG +GA+K + LL   +G+  G A +VF+R+ADAE A++  + VPL+ RP+ +S+ + L
Sbjct:   85 GTTVKVANLAFNVTSEDIEELFGEIGALKSVSLLTKEDGSSRGMALVVFKRKADAETALEKYNGVPLDGRPLKISLQSNL 164

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A834LPE5_RHOSS (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834LPE5_RHOSS)

HSP 1 Score: 66.6 bits (161), Expect = 3.200e-9
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0

Query:  209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
            G  +F+ NL   V+   + +LF  VG VK   + YDR G   G+A++VF RR DAEAA+K  +NV L+ +PM + +
Sbjct:   93 GTKLFISNLDYGVSGEDVKELFAEVGDVKRYSIHYDRSGRSKGTAEVVFSRRKDAEAAVKRYNNVQLDGKPMKIEI 168

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A2I4DVX9_JUGRE (THO complex subunit 4D-like n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DVX9_JUGRE)

HSP 1 Score: 66.2 bits (160), Expect = 6.620e-9
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 0

Query:  209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
            G  +++ NL   VT   + +LF  +G +K   + YD+ G PNGSA++V+ RR+DA AA+K  +NV L+ +PM + +
Sbjct:   95 GTKLYISNLDYGVTNEDIRELFCEIGDLKRYAVHYDKNGRPNGSAEVVYTRRSDAVAALKRYNNVLLDGKPMRIEI 170

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A396IQW2_MEDTR (Putative chromatin target of PRMT1 protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IQW2_MEDTR)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-8
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 0

Query:  212 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
            ++V NL   VT   + +LF  +G +K   + YD+ G+P GSA++V+ RR+DA AA+K  +NV L+ +PM + +
Sbjct:   31 LYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEI 103

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A834HD54_RHOSS (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834HD54_RHOSS)

HSP 1 Score: 64.7 bits (156), Expect = 1.330e-8
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 0

Query:  209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
            G  ++V NL   V+   + +LF  VG +K   + YDR G   G+A++VF RR DA+AA+K  +NV L+ +PM + +
Sbjct:   82 GTKLYVSNLDYGVSNDDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRQDAQAAVKRYNNVQLDGKPMKIEV 157

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BLAST of Gvermi12400.t1 vs. uniprot
Match: A0A7J0GR35_9ERIC (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0GR35_9ERIC)

HSP 1 Score: 63.5 bits (153), Expect = 1.570e-8
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0

Query:  209 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSM 284
            G  +++ NL   V+   + +LF  VG +K   + YDR G   G+A+IV+ RR DA+AA+K  +NV L+ +PM + +
Sbjct:   81 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEIVYSRRQDAQAAVKRYNNVQLDGKPMKIEI 156

The following BLAST results are available for this feature:

BLAST of Gvermi12400.t1 vs. uniprot

BLAST of Gvermi12400.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IPV7_9FLOR	7.990e-145	76.29	THO complex subunit 4C n=1 Tax=Gracilariopsis chor...	[more]
R7Q7Q7_CHOCR	1.030e-73	53.40	THO complex subunit 4-like n=1 Tax=Chondrus crispu...	[more]
UPI00053B2972	5.510e-10	40.51	THO complex subunit 4C-like n=3 Tax=Camelina sativ...	[more]
A0A8J2NV81_9HEXA	2.020e-9	42.67	Hypothetical protein n=1 Tax=Allacma fusca TaxID=3...	[more]
A0A0M0JT49_9EUKA	2.340e-9	41.25	Tho complex subunit 4 n=1 Tax=Chrysochromulina tob...	[more]
A0A834LPE5_RHOSS	3.200e-9	42.11	RRM domain-containing protein n=2 Tax=Rhododendron...	[more]
A0A2I4DVX9_JUGRE	6.620e-9	39.47	THO complex subunit 4D-like n=3 Tax=Juglandaceae T...	[more]
A0A396IQW2_MEDTR	1.250e-8	39.73	Putative chromatin target of PRMT1 protein n=1 Tax...	[more]
A0A834HD54_RHOSS	1.330e-8	39.47	RRM domain-containing protein n=2 Tax=Rhododendron...	[more]
A0A7J0GR35_9ERIC	1.570e-8	38.16	RNA-binding (RRM/RBD/RNP motifs) family protein n=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 211..283 e-value: 8.3E-15 score: 65.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 212..281 e-value: 1.1E-12 score: 47.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 210..287 score: 14.709315
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 134..287 e-value: 2.8E-18 score: 68.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..61
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 140..284
None	No IPR available	CDD	cd12418	RRM_Aly_REF_like	coord: 211..284 e-value: 5.88884E-21 score: 82.6479
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 195..285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4562560..4563426 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12400.t1	Gvermi12400.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_3404 4562560..4563426 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12400.t1 ID=Gvermi12400.t1|Name=Gvermi12400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=289bp
MLEHHDSAAPPPPYPSSFRRRPIVVRDPKTGETRLVGGGNRRPSPGFPPP
PGAPPQPAPSPYRYRSGVDADYDRRPNAYSSFDDQGRAPIMKIVSGYRGR
QIVVRDPSRRMQPPAPAQGANLGVRGGVRKNYYDRRGTRSSPYSEEYEED
RRADYFEEENDGRLYSHGRDAEFERDHHMNEYERGFEAPHGYYRRNRSDV
QNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPN
GSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf