Gvermi12374.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12374.t1
Unique NameGvermi12374.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4396874..4398292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RAM6
PFAMsLdh_2
Max annot lvl2836|Bacillariophyta
Evalue7.16e-153
EggNOG OGsCOG2055@1|root,2QRW5@2759|Eukaryota,2XDGM@2836|Bacillariophyta
DescriptionMalate/L-lactate dehydrogenase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12374Gvermi12374Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4396874..4398292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12374.t1Gvermi12374.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4396874..4398292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12374.t1.stop1Gvermi12374.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4396874..4396876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12374.t1.CDS1Gvermi12374.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4396874..4397268 -
Gvermi12374.t1.CDS2Gvermi12374.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4397353..4398292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12374.t1.exon1Gvermi12374.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4396874..4397268 -
Gvermi12374.t1.exon2Gvermi12374.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4397353..4398292 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12374.t1.intron1Gvermi12374.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4397269..4397352 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12374.t1.start1Gvermi12374.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4398290..4398292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12374.t1 ID=Gvermi12374.t1|Name=Gvermi12374.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MSHTVIQKMPSVVSDAGSLRTKLSSLAKRLSGDDADTLNKLLEQWDEGKL
PSVKGGVVQAVAKANDLAPTVKYAKVDMPFLRQFMEDALVAAGVPADEAS
VAAEVLEWADLHAVTTHGIGRLKPIYIDRINSGILKPTAPFDIVNQTETT
AVVDGHGGLGLFIGPKCMDICIEKAKKHGLAMVVARNSTHYGAAGYYVDK
AQKHGCIGITGTNARPSIAPTYGVQPMLGTNPLTVGMPSDDGFPFVLDCA
TSVNQRGKIEKYEREGQPTPPGQVVDRDGNVRTDTAQILKDLQTGYCSLA
PLGGVGAEMGGYKGYGYATVVELLSSALQDGLNSPQLSGVNKETGEKIPM
PLGHFFIAIDVERFIPLETFKSNVGKFLRAMRDSEKDPKGPGRIYTAGEL
EHEGFLECERAGGVQIPEPLMRDMKAIREHYPSIVAKYPKFSFE*
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spliced messenger RNA

>Gvermi12374.t1 ID=Gvermi12374.t1|Name=Gvermi12374.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:4396874..4398292- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCATACCGTGATACAGAAGATGCCGTCCGTTGTGTCTGATGCCGG
ATCGCTTCGCACGAAGCTGTCATCGCTTGCGAAGCGGCTGTCTGGAGATG
ACGCAGATACGCTCAACAAGTTATTGGAACAGTGGGATGAAGGAAAGCTT
CCGTCAGTCAAGGGAGGTGTAGTGCAGGCCGTTGCTAAGGCCAACGATTT
GGCACCCACTGTCAAGTATGCCAAGGTGGACATGCCCTTTTTGAGGCAGT
TCATGGAAGACGCGTTGGTTGCGGCAGGCGTTCCAGCTGATGAAGCTTCT
GTTGCCGCTGAAGTCTTGGAATGGGCCGATCTTCATGCTGTCACCACTCA
TGGTATTGGTCGCCTCAAGCCTATTTACATTGATCGTATCAACAGTGGTA
TCCTCAAGCCCACTGCGCCGTTTGACATCGTTAACCAGACTGAGACCACA
GCCGTGGTCGACGGTCATGGCGGGCTTGGTCTTTTCATCGGGCCCAAATG
CATGGACATCTGCATCGAAAAGGCAAAGAAGCATGGACTTGCGATGGTGG
TGGCAAGAAACAGTACTCACTATGGCGCCGCTGGATATTACGTTGACAAA
GCACAGAAACATGGCTGCATTGGTATCACGGGCACCAATGCTCGCCCCTC
AATAGCACCTACGTATGGAGTCCAACCCATGCTTGGTACGAACCCGTTGA
CAGTTGGAATGCCAAGTGACGATGGATTTCCTTTTGTTTTGGATTGTGCC
ACTTCTGTAAACCAACGTGGTAAGATTGAAAAGTATGAGCGAGAAGGGCA
ACCCACTCCGCCGGGCCAGGTTGTTGATCGAGATGGAAATGTTAGAACGG
ATACTGCGCAGATTTTGAAGGACCTGCAAACTGGATATTGCTCTCTGGCA
CCGCTAGGTGGTGTTGGTGCCGAGATGGGAGGCTATAAGGGATACGGATA
TGCAACGGTCGTAGAACTGCTGTCCTCTGCACTCCAAGACGGGTTAAACA
GTCCGCAACTTAGCGGTGTCAATAAGGAAACAGGAGAGAAGATTCCTATG
CCACTAGGACATTTCTTCATAGCTATTGACGTGGAAAGATTTATTCCACT
TGAAACCTTCAAATCAAATGTTGGGAAGTTTTTGCGTGCGATGCGTGATT
CCGAGAAAGATCCGAAGGGACCTGGTCGCATTTACACGGCCGGCGAACTG
GAGCACGAAGGATTTTTGGAATGTGAGAGGGCTGGTGGAGTTCAAATTCC
GGAGCCTTTGATGAGGGACATGAAGGCTATTCGAGAGCACTATCCTTCCA
TCGTTGCAAAATATCCGAAGTTTAGTTTTGAGTAG
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protein sequence of Gvermi12374.t1

>Gvermi12374.t1 ID=Gvermi12374.t1|Name=Gvermi12374.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MSHTVIQKMPSVVSDAGSLRTKLSSLAKRLSGDDADTLNKLLEQWDEGKL
PSVKGGVVQAVAKANDLAPTVKYAKVDMPFLRQFMEDALVAAGVPADEAS
VAAEVLEWADLHAVTTHGIGRLKPIYIDRINSGILKPTAPFDIVNQTETT
AVVDGHGGLGLFIGPKCMDICIEKAKKHGLAMVVARNSTHYGAAGYYVDK
AQKHGCIGITGTNARPSIAPTYGVQPMLGTNPLTVGMPSDDGFPFVLDCA
TSVNQRGKIEKYEREGQPTPPGQVVDRDGNVRTDTAQILKDLQTGYCSLA
PLGGVGAEMGGYKGYGYATVVELLSSALQDGLNSPQLSGVNKETGEKIPM
PLGHFFIAIDVERFIPLETFKSNVGKFLRAMRDSEKDPKGPGRIYTAGEL
EHEGFLECERAGGVQIPEPLMRDMKAIREHYPSIVAKYPKFSFE*
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mRNA from alignment at ScGOVlb_3404:4396874..4398292-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12374.t1 ID=Gvermi12374.t1|Name=Gvermi12374.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at ScGOVlb_3404:4396874..4398292- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCATACCGTGATACAGAAGATGCCGTCCGTTGTGTCTGATGCCGG
ATCGCTTCGCACGAAGCTGTCATCGCTTGCGAAGCGGCTGTCTGGAGATG
ACGCAGATACGCTCAACAAGTTATTGGAACAGTGGGATGAAGGAAAGCTT
CCGTCAGTCAAGGGAGGTGTAGTGCAGGCCGTTGCTAAGGCCAACGATTT
GGCACCCACTGTCAAGTATGCCAAGGTGGACATGCCCTTTTTGAGGCAGT
TCATGGAAGACGCGTTGGTTGCGGCAGGCGTTCCAGCTGATGAAGCTTCT
GTTGCCGCTGAAGTCTTGGAATGGGCCGATCTTCATGCTGTCACCACTCA
TGGTATTGGTCGCCTCAAGCCTATTTACATTGATCGTATCAACAGTGGTA
TCCTCAAGCCCACTGCGCCGTTTGACATCGTTAACCAGACTGAGACCACA
GCCGTGGTCGACGGTCATGGCGGGCTTGGTCTTTTCATCGGGCCCAAATG
CATGGACATCTGCATCGAAAAGGCAAAGAAGCATGGACTTGCGATGGTGG
TGGCAAGAAACAGTACTCACTATGGCGCCGCTGGATATTACGTTGACAAA
GCACAGAAACATGGCTGCATTGGTATCACGGGCACCAATGCTCGCCCCTC
AATAGCACCTACGTATGGAGTCCAACCCATGCTTGGTACGAACCCGTTGA
CAGTTGGAATGCCAAGTGACGATGGATTTCCTTTTGTTTTGGATTGTGCC
ACTTCTGTAAACCAACGTGGTAAGATTGAAAAGTATGAGCGAGAAGGGCA
ACCCACTCCGCCGGGCCAGGTTGTTGATCGAGATGGAAATGTTAGAACGG
ATACTGCGCAGATTTTGAAGGACCTGCAAACTGGATATTGCTCTCTGGCA
CCGCTAGGTGGTGTTGGTGCCGAGATGGGAGGCTATAAGGGTACGTTCAC
CAGAATTCGCTTGTTGATTACGCATTGTACTAACATTATCAATTCCTTTG
CAATCTGATATTGATGCATGACAGGATACGGATATGCAACGGTCGTAGAA
CTGCTGTCCTCTGCACTCCAAGACGGGTTAAACAGTCCGCAACTTAGCGG
TGTCAATAAGGAAACAGGAGAGAAGATTCCTATGCCACTAGGACATTTCT
TCATAGCTATTGACGTGGAAAGATTTATTCCACTTGAAACCTTCAAATCA
AATGTTGGGAAGTTTTTGCGTGCGATGCGTGATTCCGAGAAAGATCCGAA
GGGACCTGGTCGCATTTACACGGCCGGCGAACTGGAGCACGAAGGATTTT
TGGAATGTGAGAGGGCTGGTGGAGTTCAAATTCCGGAGCCTTTGATGAGG
GACATGAAGGCTATTCGAGAGCACTATCCTTCCATCGTTGCAAAATATCC
GAAGTTTAGTTTTGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4396874..4398292-

>Gvermi12374.t1 ID=Gvermi12374.t1|Name=Gvermi12374.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:4396874..4398292- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCATACCGTGATACAGAAGATGCCGTCCGTTGTGTCTGATGCCGG
ATCGCTTCGCACGAAGCTGTCATCGCTTGCGAAGCGGCTGTCTGGAGATG
ACGCAGATACGCTCAACAAGTTATTGGAACAGTGGGATGAAGGAAAGCTT
CCGTCAGTCAAGGGAGGTGTAGTGCAGGCCGTTGCTAAGGCCAACGATTT
GGCACCCACTGTCAAGTATGCCAAGGTGGACATGCCCTTTTTGAGGCAGT
TCATGGAAGACGCGTTGGTTGCGGCAGGCGTTCCAGCTGATGAAGCTTCT
GTTGCCGCTGAAGTCTTGGAATGGGCCGATCTTCATGCTGTCACCACTCA
TGGTATTGGTCGCCTCAAGCCTATTTACATTGATCGTATCAACAGTGGTA
TCCTCAAGCCCACTGCGCCGTTTGACATCGTTAACCAGACTGAGACCACA
GCCGTGGTCGACGGTCATGGCGGGCTTGGTCTTTTCATCGGGCCCAAATG
CATGGACATCTGCATCGAAAAGGCAAAGAAGCATGGACTTGCGATGGTGG
TGGCAAGAAACAGTACTCACTATGGCGCCGCTGGATATTACGTTGACAAA
GCACAGAAACATGGCTGCATTGGTATCACGGGCACCAATGCTCGCCCCTC
AATAGCACCTACGTATGGAGTCCAACCCATGCTTGGTACGAACCCGTTGA
CAGTTGGAATGCCAAGTGACGATGGATTTCCTTTTGTTTTGGATTGTGCC
ACTTCTGTAAACCAACGTGGTAAGATTGAAAAGTATGAGCGAGAAGGGCA
ACCCACTCCGCCGGGCCAGGTTGTTGATCGAGATGGAAATGTTAGAACGG
ATACTGCGCAGATTTTGAAGGACCTGCAAACTGGATATTGCTCTCTGGCA
CCGCTAGGTGGTGTTGGTGCCGAGATGGGAGGCTATAAGGGATACGGATA
TGCAACGGTCGTAGAACTGCTGTCCTCTGCACTCCAAGACGGGTTAAACA
GTCCGCAACTTAGCGGTGTCAATAAGGAAACAGGAGAGAAGATTCCTATG
CCACTAGGACATTTCTTCATAGCTATTGACGTGGAAAGATTTATTCCACT
TGAAACCTTCAAATCAAATGTTGGGAAGTTTTTGCGTGCGATGCGTGATT
CCGAGAAAGATCCGAAGGGACCTGGTCGCATTTACACGGCCGGCGAACTG
GAGCACGAAGGATTTTTGGAATGTGAGAGGGCTGGTGGAGTTCAAATTCC
GGAGCCTTTGATGAGGGACATGAAGGCTATTCGAGAGCACTATCCTTCCA
TCGTTGCAAAATATCCGAAGTTTAGTTTTGAGTAG
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