Gvermi12342.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12342.t1
Unique NameGvermi12342.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length515
Homology
The following BLAST results are available for this feature:
BLAST of Gvermi12342.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 484..506
e-value: 0.02
score: 24.1
coord: 372..395
e-value: 0.23
score: 20.6
coord: 455..478
e-value: 0.0053
score: 26.0
coord: 341..364
e-value: 0.16
score: 21.0
coord: 402..425
e-value: 0.067
score: 22.3
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 484..506
e-value: 0.001
score: 19.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 404..425
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 373..395
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 343..364
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 486..506
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 455..483
score: 9.306988
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 372..400
score: 8.725061
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 341..364
score: 8.600363
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 484..511
score: 10.574757
NoneNo IPR availablePFAMPF13909zf-H2C2_5coord: 455..478
e-value: 1.4E-6
score: 27.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 451..514
e-value: 4.0E-12
score: 48.0
coord: 369..449
e-value: 5.3E-11
score: 44.4
NoneNo IPR availablePANTHERPTHR24409:SF320AZ2-RELATEDcoord: 455..507
coord: 178..427
NoneNo IPR availablePANTHERPTHR24409ZINC FINGER PROTEIN 142coord: 455..507
coord: 178..427
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 373..422
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 454..506

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4284258..4285802 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12342.t1Gvermi12342.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4284258..4285802 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12342.t1 ID=Gvermi12342.t1|Name=Gvermi12342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=515bp
MAPATIIASNGLLDAPFSPFTARGVHLATQLPPQSSLLFDCNVYSRSVCR
ENPPPGSQISTLHGHDGISLHQNNCSGGAEQLPVSHEIPVYNESAFVEPQ
KEPYSLNTTFSRVPTVSVPGPTDEHVGNLDVGHHGQKDLSSAPYMSAATL
DLSQLPTDQVYVSQSMTKEPTPAYYKDHGVPMHSSVGQLFAPCHMRPSTQ
VLGEETPVVQNNFPDVSSTQQILRNNIYENINSAYPTQTREPQNGSFPDG
QGNCSIPLTNEEMLKTFCGITLPDHPTTVAYDEQVHHGYNLLHFSNSGGR
NEGRADGNVHPSFSMPVNGSLKEYFPVDLTATAFQSNDGRIQCSQCTKEF
GNMASWKRHATRVHRIASATKICCEICSLEFRNDENLLRHLKTAHESVAE
PLTCPQCSASFSSKRVRALHMVRIHSKSSALSVNQTVSKKKRKKRAPRTS
KTNLHKCTVCDYVSRWKGNISRHVKAVHLDLRPFFCDACPKRFNSPSNLA
VHKLKHAKEVDKET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf