Gvermi12342.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12342.t1
Unique NameGvermi12342.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4284258..4285802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR002105-PA
PFAMsOTU,UBA_4,zf-A20
Max annot lvl33208|Metazoa
KEGG koko:K11860
Evalue1.88e-05
EggNOG OGsCOG0638@1|root,KOG1721@1|root,KOG3863@1|root,KOG4345@1|root,KOG0178@2759|Eukaryota,KOG1721@2759|Eukaryota,KOG3863@2759|Eukaryota,KOG4345@2759|Eukaryota,38DIM@33154|Opisthokonta,3BEHB@33208|Metazoa,3CRZG@33213|Bilateria,41XE2@6656|Arthropoda
EC3.4.19.12
DescriptionOTU-like cysteine protease
COG categoryT
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12342Gvermi12342Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4284258..4285802 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12342.t1.stop1Gvermi12342.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4284258..4284260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12342.t1.CDS1Gvermi12342.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4284258..4285802 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12342.t1.exon1Gvermi12342.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4284258..4285802 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12342.t1.start1Gvermi12342.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4285800..4285802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12342.t1Gvermi12342.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4284258..4285802 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12342.t1 ID=Gvermi12342.t1|Name=Gvermi12342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=515bp
MAPATIIASNGLLDAPFSPFTARGVHLATQLPPQSSLLFDCNVYSRSVCR
ENPPPGSQISTLHGHDGISLHQNNCSGGAEQLPVSHEIPVYNESAFVEPQ
KEPYSLNTTFSRVPTVSVPGPTDEHVGNLDVGHHGQKDLSSAPYMSAATL
DLSQLPTDQVYVSQSMTKEPTPAYYKDHGVPMHSSVGQLFAPCHMRPSTQ
VLGEETPVVQNNFPDVSSTQQILRNNIYENINSAYPTQTREPQNGSFPDG
QGNCSIPLTNEEMLKTFCGITLPDHPTTVAYDEQVHHGYNLLHFSNSGGR
NEGRADGNVHPSFSMPVNGSLKEYFPVDLTATAFQSNDGRIQCSQCTKEF
GNMASWKRHATRVHRIASATKICCEICSLEFRNDENLLRHLKTAHESVAE
PLTCPQCSASFSSKRVRALHMVRIHSKSSALSVNQTVSKKKRKKRAPRTS
KTNLHKCTVCDYVSRWKGNISRHVKAVHLDLRPFFCDACPKRFNSPSNLA
VHKLKHAKEVDKET*
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spliced messenger RNA

>Gvermi12342.t1 ID=Gvermi12342.t1|Name=Gvermi12342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at ScGOVlb_3404:4284258..4285802- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGCGACAATCATTGCTTCCAATGGGCTTCTTGATGCTCCTTT
TTCTCCGTTCACCGCTCGTGGTGTACATTTAGCCACCCAACTTCCGCCAC
AGTCATCACTTCTGTTTGACTGCAATGTCTACTCGAGATCCGTATGCCGT
GAAAACCCTCCGCCAGGGTCTCAGATTTCAACGCTTCATGGCCACGATGG
TATTTCCTTACACCAAAATAATTGTTCAGGTGGCGCAGAACAATTACCCG
TTTCGCATGAAATACCAGTATACAATGAAAGTGCGTTTGTTGAACCGCAA
AAAGAACCGTATTCCTTGAACACGACGTTTTCTCGCGTACCTACCGTTTC
AGTACCGGGACCCACAGATGAACATGTTGGTAATTTGGACGTTGGACATC
ATGGGCAAAAAGATCTCTCTTCGGCGCCTTATATGTCGGCAGCAACGCTT
GACCTTTCCCAATTGCCTACAGATCAAGTCTATGTGTCTCAGAGTATGAC
AAAAGAACCCACGCCTGCATACTACAAAGACCATGGCGTCCCTATGCATT
CATCTGTCGGACAACTGTTTGCTCCTTGCCACATGAGGCCTTCCACGCAA
GTCCTGGGAGAAGAAACACCGGTGGTTCAAAATAATTTTCCCGATGTTTC
CTCAACACAACAGATCCTCAGAAATAACATTTATGAAAACATAAATAGTG
CATACCCCACTCAAACAAGGGAACCGCAAAATGGGTCTTTTCCGGATGGT
CAAGGAAATTGTTCCATTCCTCTGACAAACGAAGAAATGCTGAAGACGTT
CTGCGGAATCACACTCCCAGATCATCCAACAACGGTTGCATATGATGAAC
AAGTACATCATGGATACAACCTTCTTCACTTTTCAAACTCGGGGGGGCGG
AATGAGGGCAGAGCAGATGGAAATGTGCATCCAAGCTTCAGCATGCCAGT
AAACGGCAGTTTGAAGGAGTACTTTCCCGTAGACTTGACTGCCACAGCTT
TCCAATCCAATGATGGTCGTATTCAATGCAGTCAATGTACGAAAGAGTTT
GGAAACATGGCCTCTTGGAAACGCCACGCTACAAGAGTACATCGCATTGC
ATCTGCGACAAAGATTTGCTGTGAAATATGTTCTTTGGAGTTTCGGAATG
ACGAGAATTTGCTGAGGCACTTGAAAACGGCTCATGAAAGTGTTGCAGAG
CCGCTTACATGCCCACAATGCTCTGCATCCTTTTCCTCAAAACGAGTGCG
CGCACTCCATATGGTGCGAATTCATTCAAAGTCTAGTGCTCTCTCTGTCA
ATCAGACGGTCTCCAAGAAAAAGCGAAAAAAGCGCGCACCACGAACATCA
AAGACCAATCTGCACAAATGTACAGTCTGCGATTATGTGTCGAGATGGAA
AGGAAACATATCACGACATGTTAAGGCGGTCCACCTGGATCTTCGACCTT
TTTTCTGCGATGCTTGCCCAAAGAGATTTAATTCTCCTAGTAATCTTGCC
GTTCACAAGCTTAAGCATGCAAAGGAAGTGGATAAAGAAACGTAA
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protein sequence of Gvermi12342.t1

>Gvermi12342.t1 ID=Gvermi12342.t1|Name=Gvermi12342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=515bp
MAPATIIASNGLLDAPFSPFTARGVHLATQLPPQSSLLFDCNVYSRSVCR
ENPPPGSQISTLHGHDGISLHQNNCSGGAEQLPVSHEIPVYNESAFVEPQ
KEPYSLNTTFSRVPTVSVPGPTDEHVGNLDVGHHGQKDLSSAPYMSAATL
DLSQLPTDQVYVSQSMTKEPTPAYYKDHGVPMHSSVGQLFAPCHMRPSTQ
VLGEETPVVQNNFPDVSSTQQILRNNIYENINSAYPTQTREPQNGSFPDG
QGNCSIPLTNEEMLKTFCGITLPDHPTTVAYDEQVHHGYNLLHFSNSGGR
NEGRADGNVHPSFSMPVNGSLKEYFPVDLTATAFQSNDGRIQCSQCTKEF
GNMASWKRHATRVHRIASATKICCEICSLEFRNDENLLRHLKTAHESVAE
PLTCPQCSASFSSKRVRALHMVRIHSKSSALSVNQTVSKKKRKKRAPRTS
KTNLHKCTVCDYVSRWKGNISRHVKAVHLDLRPFFCDACPKRFNSPSNLA
VHKLKHAKEVDKET*
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mRNA from alignment at ScGOVlb_3404:4284258..4285802-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12342.t1 ID=Gvermi12342.t1|Name=Gvermi12342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at ScGOVlb_3404:4284258..4285802- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCGCGACAATCATTGCTTCCAATGGGCTTCTTGATGCTCCTTT
TTCTCCGTTCACCGCTCGTGGTGTACATTTAGCCACCCAACTTCCGCCAC
AGTCATCACTTCTGTTTGACTGCAATGTCTACTCGAGATCCGTATGCCGT
GAAAACCCTCCGCCAGGGTCTCAGATTTCAACGCTTCATGGCCACGATGG
TATTTCCTTACACCAAAATAATTGTTCAGGTGGCGCAGAACAATTACCCG
TTTCGCATGAAATACCAGTATACAATGAAAGTGCGTTTGTTGAACCGCAA
AAAGAACCGTATTCCTTGAACACGACGTTTTCTCGCGTACCTACCGTTTC
AGTACCGGGACCCACAGATGAACATGTTGGTAATTTGGACGTTGGACATC
ATGGGCAAAAAGATCTCTCTTCGGCGCCTTATATGTCGGCAGCAACGCTT
GACCTTTCCCAATTGCCTACAGATCAAGTCTATGTGTCTCAGAGTATGAC
AAAAGAACCCACGCCTGCATACTACAAAGACCATGGCGTCCCTATGCATT
CATCTGTCGGACAACTGTTTGCTCCTTGCCACATGAGGCCTTCCACGCAA
GTCCTGGGAGAAGAAACACCGGTGGTTCAAAATAATTTTCCCGATGTTTC
CTCAACACAACAGATCCTCAGAAATAACATTTATGAAAACATAAATAGTG
CATACCCCACTCAAACAAGGGAACCGCAAAATGGGTCTTTTCCGGATGGT
CAAGGAAATTGTTCCATTCCTCTGACAAACGAAGAAATGCTGAAGACGTT
CTGCGGAATCACACTCCCAGATCATCCAACAACGGTTGCATATGATGAAC
AAGTACATCATGGATACAACCTTCTTCACTTTTCAAACTCGGGGGGGCGG
AATGAGGGCAGAGCAGATGGAAATGTGCATCCAAGCTTCAGCATGCCAGT
AAACGGCAGTTTGAAGGAGTACTTTCCCGTAGACTTGACTGCCACAGCTT
TCCAATCCAATGATGGTCGTATTCAATGCAGTCAATGTACGAAAGAGTTT
GGAAACATGGCCTCTTGGAAACGCCACGCTACAAGAGTACATCGCATTGC
ATCTGCGACAAAGATTTGCTGTGAAATATGTTCTTTGGAGTTTCGGAATG
ACGAGAATTTGCTGAGGCACTTGAAAACGGCTCATGAAAGTGTTGCAGAG
CCGCTTACATGCCCACAATGCTCTGCATCCTTTTCCTCAAAACGAGTGCG
CGCACTCCATATGGTGCGAATTCATTCAAAGTCTAGTGCTCTCTCTGTCA
ATCAGACGGTCTCCAAGAAAAAGCGAAAAAAGCGCGCACCACGAACATCA
AAGACCAATCTGCACAAATGTACAGTCTGCGATTATGTGTCGAGATGGAA
AGGAAACATATCACGACATGTTAAGGCGGTCCACCTGGATCTTCGACCTT
TTTTCTGCGATGCTTGCCCAAAGAGATTTAATTCTCCTAGTAATCTTGCC
GTTCACAAGCTTAAGCATGCAAAGGAAGTGGATAAAGAAACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4284258..4285802-

>Gvermi12342.t1 ID=Gvermi12342.t1|Name=Gvermi12342.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1545bp|location=Sequence derived from alignment at ScGOVlb_3404:4284258..4285802- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCGCGACAATCATTGCTTCCAATGGGCTTCTTGATGCTCCTTT
TTCTCCGTTCACCGCTCGTGGTGTACATTTAGCCACCCAACTTCCGCCAC
AGTCATCACTTCTGTTTGACTGCAATGTCTACTCGAGATCCGTATGCCGT
GAAAACCCTCCGCCAGGGTCTCAGATTTCAACGCTTCATGGCCACGATGG
TATTTCCTTACACCAAAATAATTGTTCAGGTGGCGCAGAACAATTACCCG
TTTCGCATGAAATACCAGTATACAATGAAAGTGCGTTTGTTGAACCGCAA
AAAGAACCGTATTCCTTGAACACGACGTTTTCTCGCGTACCTACCGTTTC
AGTACCGGGACCCACAGATGAACATGTTGGTAATTTGGACGTTGGACATC
ATGGGCAAAAAGATCTCTCTTCGGCGCCTTATATGTCGGCAGCAACGCTT
GACCTTTCCCAATTGCCTACAGATCAAGTCTATGTGTCTCAGAGTATGAC
AAAAGAACCCACGCCTGCATACTACAAAGACCATGGCGTCCCTATGCATT
CATCTGTCGGACAACTGTTTGCTCCTTGCCACATGAGGCCTTCCACGCAA
GTCCTGGGAGAAGAAACACCGGTGGTTCAAAATAATTTTCCCGATGTTTC
CTCAACACAACAGATCCTCAGAAATAACATTTATGAAAACATAAATAGTG
CATACCCCACTCAAACAAGGGAACCGCAAAATGGGTCTTTTCCGGATGGT
CAAGGAAATTGTTCCATTCCTCTGACAAACGAAGAAATGCTGAAGACGTT
CTGCGGAATCACACTCCCAGATCATCCAACAACGGTTGCATATGATGAAC
AAGTACATCATGGATACAACCTTCTTCACTTTTCAAACTCGGGGGGGCGG
AATGAGGGCAGAGCAGATGGAAATGTGCATCCAAGCTTCAGCATGCCAGT
AAACGGCAGTTTGAAGGAGTACTTTCCCGTAGACTTGACTGCCACAGCTT
TCCAATCCAATGATGGTCGTATTCAATGCAGTCAATGTACGAAAGAGTTT
GGAAACATGGCCTCTTGGAAACGCCACGCTACAAGAGTACATCGCATTGC
ATCTGCGACAAAGATTTGCTGTGAAATATGTTCTTTGGAGTTTCGGAATG
ACGAGAATTTGCTGAGGCACTTGAAAACGGCTCATGAAAGTGTTGCAGAG
CCGCTTACATGCCCACAATGCTCTGCATCCTTTTCCTCAAAACGAGTGCG
CGCACTCCATATGGTGCGAATTCATTCAAAGTCTAGTGCTCTCTCTGTCA
ATCAGACGGTCTCCAAGAAAAAGCGAAAAAAGCGCGCACCACGAACATCA
AAGACCAATCTGCACAAATGTACAGTCTGCGATTATGTGTCGAGATGGAA
AGGAAACATATCACGACATGTTAAGGCGGTCCACCTGGATCTTCGACCTT
TTTTCTGCGATGCTTGCCCAAAGAGATTTAATTCTCCTAGTAATCTTGCC
GTTCACAAGCTTAAGCATGCAAAGGAAGTGGATAAAGAAACGTAA
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