Gvermi12222.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12222.t1
Unique NameGvermi12222.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length389
Homology
BLAST of Gvermi12222.t1 vs. uniprot
Match: A0A2V3J090_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J090_9FLOR)

HSP 1 Score: 413 bits (1062), Expect = 2.900e-140
Identity = 229/382 (59.95%), Postives = 275/382 (71.99%), Query Frame = 0
Query:    1 MESNAALASAVPLDLPLWDDGFLAEPHRAAS-PSDSNASE-FDLTLPLHDD--SALIIPQNFHPQSLFVSSKQSVDVIHPDLSPQNLFCIPLTDADAHSVDDSSPEQPHTTPATTXXXXXXXXXSPHLPSA----IRPNVSHTRRCRAKVNTNFDRLLELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSVALRYVTGALPPSVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAFTGMDSSSYA 374
            M+S + L +  P D+P  DD       +A   P D  AS   DLTL   D+  + L      HPQ  F+  + +++++H + +    F + L + D  SVDDSS           XXXXXXXXX           +RPNVSHTRRCRAK+NTNFDRLL++LP+PP GVEVKHKAQILQYAI HYR V  KN +LEM LAL S S M+RWVQSVV  +PNL+D+LK FMA+ICLTKNWKYAELW+P T   SSSVAL Y +GALPP+V+GE L RL+ YR  SRKY F PRSGVPGRV+LTMRPEWLPLLNDP+AFPRAPHAV+N+VEVTFAVPV+VNG V+MVV+FYDT RRDY+PATLNM N+IA MFGKAFT ++SS +A
Sbjct:    1 MDSISTLPADFPKDIPPRDDHMFPTVQQATDIPLDQFASPPIDLTLSDTDNPTNTLYYHSKLHPQPFFIPPQAAIEILHSEFASPLPFDLTLPEPDCQSVDDSSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRPNVSHTRRCRAKLNTNFDRLLQVLPKPPPGVEVKHKAQILQYAIDHYRHVRCKNVKLEMTLALSSRSHMHRWVQSVVHTSPNLRDSLKSFMAMICLTKNWKYAELWSPHTPTDSSSVALTYASGALPPTVEGEELHRLKAYRVKSRKYTFAPRSGVPGRVFLTMRPEWLPLLNDPVAFPRAPHAVRNRVEVTFAVPVVVNGSVKMVVQFYDTYRRDYEPATLNMTNEIAAMFGKAFTAINSSPFA 382          
BLAST of Gvermi12222.t1 vs. uniprot
Match: A0A2V3ILC3_9FLOR (BHLH domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC3_9FLOR)

HSP 1 Score: 187 bits (476), Expect = 1.270e-51
Identity = 104/260 (40.00%), Postives = 145/260 (55.77%), Query Frame = 0
Query:  135 TRRCRAKVNTNFDRLLELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSV---ALRYVTG----------------------ALPPSV----DGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAF 365
            TR+CRAKVN+ F  LL +LP PPA   +KHKAQIL+Y I  YR + ++   LE  LAL SPS++  W+ ++VS + +L+DAL P++++IC    WKY+E W P     S++     LR +TG                      A+ PS+    D +   +L ++R  SR Y   PR  +PGR+  TMRPEWLP L D  AF RA  A    + V F VP+ +   V  V  FYDT++R YD   L++A  +A M G A+
Sbjct:  175 TRKCRAKVNSKFKELLGILPAPPANTGIKHKAQILEYTIRVYRDIHARKTLLEAELALSSPSQLNAWISNIVSRSRSLQDALAPYLSLICTKGAWKYSEAWVPLQEPESNTTNDSQLRAITGESRFLTPANMLLGPNARLRLGLAVIPSLGNTDDPDLQPKLERFRDRSRPYTCKPRVDLPGRIMCTMRPEWLPSLEDHEAFQRAKLARDASLVVCFGVPIFIGDHVAAVAVFYDTDQRTYDAKCLDLAVRVARMLGSAY 434          
BLAST of Gvermi12222.t1 vs. uniprot
Match: R7QJ09_CHOCR (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ09_CHOCR)

HSP 1 Score: 182 bits (463), Expect = 4.180e-51
Identity = 104/262 (39.69%), Postives = 144/262 (54.96%), Query Frame = 0
Query:  133 SHTRRCRAKVNTNFDRLLELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTR--------------AGSSSVA------------LRYVTGALPP---SVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAF 365
            SHTRRCRAKVN  F  LL +LP PP    +KHKAQIL YAI  YR + ++   LE  LAL S S++  WV  +V  + +L+DAL P++++IC    WKY+E W P  +              +G S+V             LR     +P    + D +   +L ++R  SR Y+   R  +PGRV  TMRPEWLP LND  AF RA  A    + V F VPV + G +  V  F+DT++R YD   +++A++I+ + G AF
Sbjct:   46 SHTRRCRAKVNLKFQELLSILPTPPPKTGIKHKAQILDYAIRVYRDIHARKTLLEAELALSSRSQLNAWVDGIVLRSISLQDALAPYLSLICTKGGWKYSEAWIPAQQPIPSQPVRGKVEAVSGESNVLTPTTLLSGPTARLRLGLAVIPSLGNTDDPDLQTKLERFRDKSRAYQCKARVDLPGRVMCTMRPEWLPSLNDQEAFQRAHLAHNANLVVCFGVPVFICGHIAAVAVFFDTDQRAYDAKCVDLADNISGLLGNAF 307          
BLAST of Gvermi12222.t1 vs. uniprot
Match: A0A7S1TET1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET1_9RHOD)

HSP 1 Score: 180 bits (456), Expect = 6.190e-48
Identity = 97/244 (39.75%), Postives = 138/244 (56.56%), Query Frame = 0
Query:  133 SHTRRCRAKVNTNFDRLLELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRA---------GSSSVALRYVTGALPPSVDGEALM--RLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAF 365
            SHTRRCR KVN  F  L+  LP PP G E+KHKAQIL Y+I   + ++S+   LE  LAL +   +  WV  VV+   +  DA+ PF+ ++C  K WK AELW P               +   L+ +  +   +++ +     R+ ++   SR++KF P  G PGRVY TMRPEWL  L+D   FPRA  A +  +    ++P ++NG V+ VV  YD E+R+ D   L++A DIAI+ G AF
Sbjct:  269 SHTRRCREKVNEKFQTLMNELPPPPTGTEIKHKAQILDYSIRVLKDLASRKAALESELALSNRRNLLGWVDRVVNDAEDFPDAINPFLKMMCSKKAWKCAELWVPVEERVMVSCPLPQSETPTRLKLLRASFHENLEQDPPRHHRIHEFIDESRRFKFTPTCGSPGRVYSTMRPEWLHDLSDEQVFPRAELASKAGLVTCLSIPFLINGRVRGVVCLYDDEKRECDMGDLDLAFDIAILIGNAF 512          
BLAST of Gvermi12222.t1 vs. uniprot
Match: A0A1X6PIG4_PORUM (BHLH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIG4_PORUM)

HSP 1 Score: 179 bits (455), Expect = 5.050e-47
Identity = 107/305 (35.08%), Postives = 153/305 (50.16%), Query Frame = 0
Query:  133 SHTRRCRAKVNTNFDRLLELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQ-TRA-------------------GSSSVALRYVTGALPPSV----------------------------------------------------DGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAF 365
            SHTR+CRAKVNT FD LL LLP  P   +VKHKAQIL Y IH Y+++ ++  QLE  LAL + + +  WV +VV+++  L +AL+P++ +I + K ++YAELW PQ T+A                   G S V  R +   LP  V                                                    +      +  +R  +      PR G+PGRVY +MRPEWLP+L+DP AF RA +A  +K+ +  AVPV++ G V  V  F+DT +R YD + + +A+D+A + G AF
Sbjct:  345 SHTRKCRAKVNTKFDELLTLLPPHPDSFQVKHKAQILDYTIHMYKRIQARKNQLEAELALSTRANLAAWVDTVVASSRTLPEALRPYLHLIAVQKRFRYAELWLPQPTKAEGMAAAKKAGANASLSLPSGDSIVLTRSMALVLPAPVPTAGQTDELSVGLGAPTGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENTTRAIEAFRDATASCVVPPRVGMPGRVYCSMRPEWLPMLSDPHAFIRAEYAANSKLSMCLAVPVLLCGRVAAVAAFFDTGKRPYDASVVGLAHDVANLVGNAF 649          
BLAST of Gvermi12222.t1 vs. uniprot
Match: A0A2V3IV04_9FLOR (GAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV04_9FLOR)

HSP 1 Score: 159 bits (401), Expect = 1.390e-40
Identity = 87/242 (35.95%), Postives = 135/242 (55.79%), Query Frame = 0
Query:  132 VSHTRRCRAKVNTNFDRLLELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGS------SSVALRYVTGALPPSVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAFTG 367
            +SHT+ CR ++N+ F+RL   LP  P+GVEVKHKAQ+L YAI   + +  +  QLE+ LA+ S      W+  +V       +A +  M +    + WK+AELW    +  S      +SV LR+ +     + + E  + L+ +   S KY F  + GVPGRV+ +MRPEW+  L++   F R+  A ++ ++V  AVPV + G ++ V+ FYDT+ R YD   L +A ++A   G A  G
Sbjct:  210 LSHTKMCRDRLNSMFERLKRTLPPAPSGVEVKHKAQVLDYAILVLKGMVERTTQLEIELAVSSNKATMEWISKLVDRVDTFPNAAEEVMQLFSRRRGWKHAELWTTSRKTASPEVDSDNSVTLRFCSSICSETTN-ERKLNLQTFSKASEKYAFKAQHGVPGRVWSSMRPEWVTGLDNSKNFHRSSLAKKHGLKVCLAVPVTITGKIEAVMCFYDTKHRPYDTQCLELAMNLAWALGNAVGG 450          
BLAST of Gvermi12222.t1 vs. uniprot
Match: R7QKH2_CHOCR (GAF domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKH2_CHOCR)

HSP 1 Score: 152 bits (385), Expect = 3.030e-37
Identity = 86/241 (35.68%), Postives = 124/241 (51.45%), Query Frame = 0
Query:  132 VSHTRRCRAKVNTNFDRLLELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSVALRYVT-----GALPPSVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAFTG 367
            +SHT+ CR ++N  F+RL   LP  P GVEVKHKAQ+L YAI     +  +  QLE+ LA+ S      W+  +V+ T +  +A +  M +    ++WK+AELW    R+      L   T      ++   V G+    L ++   S  Y F    GV GRV+  MRPEW+  L DP  F R   A ++ V+V  AVPV + G ++ V+ FYD + R YD     +A  +A   G A  G
Sbjct:  422 LSHTKMCRDRLNNMFERLRHTLPPAPTGVEVKHKAQVLDYAIAVLHGMVDRTAQLEIELAVSSNKATMDWISKLVARTESFPEAAEEVMRLFARRRSWKHAELWVAGKRSMPPDANLEDSTILTLCTSISNDVYGQGASSLDRFSKQSESYSFKANEGVQGRVWSAMRPEWVTGLTDPKNFKRCSLAREHGVKVCLAVPVTITGKIEAVMCFYDVKHRPYDTQCRELAMRLAWALGNAVGG 662          
BLAST of Gvermi12222.t1 vs. uniprot
Match: A0A1X6NUF4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUF4_PORUM)

HSP 1 Score: 82.0 bits (201), Expect = 4.000e-13
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 0
Query:  250 YVTGALP-PSVDGE---ALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLP-LLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGKAF 365
            Y +G  P PS       A   L ++   SR ++F P+ GVPGRV+ TMRPEWL  L +D   F RAP A +  + V  AVPV V+G V  VV FYDT  R +DPA  ++A  +    G A+
Sbjct:  858 YDSGITPRPSASASLAAANAALERFSIESRAWRFRPKVGVPGRVWSTMRPEWLASLADDRGTFLRAPLARRFGLRVCVAVPVTVSGSVAAVVAFYDTVARPFDPACYDLAVKLTCALGNAY 978          
BLAST of Gvermi12222.t1 vs. uniprot
Match: A0A1F2R4Y1_9BACT (PAS domain-containing protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 TaxID=1797181 RepID=A0A1F2R4Y1_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 5.390e-12
Identity = 51/159 (32.08%), Postives = 72/159 (45.28%), Query Frame = 0
Query:  205 VVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSVALRYVTGALPPSVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPLLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFGK 363
            V++   +L DA    +  IC T NW++A +W    R    +  LR V     P V      R  K+   SR   F P  G+PG V+ + RP W+P +     FPRAP A        F  P+++   V  V+EF+  E R+ D A L M   I    G+
Sbjct:   27 VLATAAHLSDATPRILEAICTTLNWEHATVW----RVDRQASVLRCVEIWHQPDV------RFAKFEALSRGMTFAPGIGLPGSVWSSGRPLWIPDVVHHDNFPRAPIAAAEGPHAAFGFPIMLGPEVLGVMEFFSREIREPDEALLAMLGTIGHQIGQ 175          
BLAST of Gvermi12222.t1 vs. uniprot
Match: UPI001683F77F (diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001683F77F)

HSP 1 Score: 76.6 bits (187), Expect = 1.560e-11
Identity = 50/196 (25.51%), Postives = 95/196 (48.47%), Query Frame = 0
Query:  174 HHYRQVSSKNRQLEMRLALRSPSE----MYRWVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSVALRYVTGALPPSVDGEALMR-LRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLP--LLNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPATLNMANDIAIMFG 362
            H Y Q++++N  L+ ++  R  +E    +   +   +S + +L  AL+  +  +C T +W + E W P               G L  S    A    L+++R +S K  F P +G+PGRV+++ +PEW+    L     F R+  A++  ++    VP++++  V  V+ F+ TE+R  +   + + N +A   G
Sbjct:  132 HLYNQLATQNAVLQQQIQERQRAEAETNLLLQITQAISKSSDLDSALEVTLQQVCETISWNFGEAWIPND------------DGFLECSCGWYATTESLQEFRYYSEKLTFTPHTGLPGRVWMSQKPEWIENVSLEQNQLFLRSDIALEAGLKTALGVPLVLDDQVLAVLVFFKTEQRKPEERLIELVNAVATQLG 315          
The following BLAST results are available for this feature:
BLAST of Gvermi12222.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J090_9FLOR2.900e-14059.95BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ILC3_9FLOR1.270e-5140.00BHLH domain-containing protein n=2 Tax=Gracilariop... [more]
R7QJ09_CHOCR4.180e-5139.69BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A7S1TET1_9RHOD6.190e-4839.75Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6PIG4_PORUM5.050e-4735.08BHLH domain-containing protein n=1 Tax=Porphyra um... [more]
A0A2V3IV04_9FLOR1.390e-4035.95GAF domain-containing protein n=1 Tax=Gracilariops... [more]
R7QKH2_CHOCR3.030e-3735.68GAF domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A1X6NUF4_PORUM4.000e-1342.98Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1F2R4Y1_9BACT5.390e-1232.08PAS domain-containing protein n=1 Tax=Acidobacteri... [more]
UPI001683F77F1.560e-1125.51diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 132..199
e-value: 2.3E-5
score: 26.3
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 134..190
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 200..366
e-value: 5.2E-7
score: 31.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..128
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 126..179
score: 8.822596

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3888545..3889711 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12222.t1Gvermi12222.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3888545..3889711 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12222.t1 ID=Gvermi12222.t1|Name=Gvermi12222.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=389bp
MESNAALASAVPLDLPLWDDGFLAEPHRAASPSDSNASEFDLTLPLHDDS
ALIIPQNFHPQSLFVSSKQSVDVIHPDLSPQNLFCIPLTDADAHSVDDSS
PEQPHTTPATTTTPATTTTPSPHLPSAIRPNVSHTRRCRAKVNTNFDRLL
ELLPEPPAGVEVKHKAQILQYAIHHYRQVSSKNRQLEMRLALRSPSEMYR
WVQSVVSATPNLKDALKPFMAIICLTKNWKYAELWAPQTRAGSSSVALRY
VTGALPPSVDGEALMRLRKYRGHSRKYKFFPRSGVPGRVYLTMRPEWLPL
LNDPIAFPRAPHAVQNKVEVTFAVPVIVNGVVQMVVEFYDTERRDYDPAT
LNMANDIAIMFGKAFTGMDSSSYASQSSSFSHEYSRYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR029016GAF-like_dom_sf
IPR011598bHLH_dom