Gvermi11523.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi11523.t1
Unique NameGvermi11523.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length274
Homology
BLAST of Gvermi11523.t1 vs. uniprot
Match: A0A2V3IWT0_9FLOR (PiRNA biogenesis protein EXD1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWT0_9FLOR)

HSP 1 Score: 393 bits (1009), Expect = 8.230e-135
Identity = 192/271 (70.85%), Postives = 230/271 (84.87%), Query Frame = 0
Query:    1 LRYVCSVADCAAAVRALSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAWPTVLSQSHFYLTVFRDDEHGPRKAQRQYEQMARVARRERLALDAAKRLDNVRAADPLRNFTFDRALVLRAM 271
            L YV ++ +CA AV +LS F R+AVDCEGVALSRTGRLCLLQLASP+H++++DLV  +P HA  MF+ GGLK LL+NP ++KV+HDCRHDSDAL+HQFGVKL  VIDTQVVFAVLR  RGMP+GLPVSLKTLLKKFTS +E  L MKNAIK+SM+GDDDFWLRRPLS  ALQYARLDVEHLL + + LS+YI +ADP AW  VL +S F++TVFRDDEHGPRKAQ+QYE MAR+ARR+RLA  A KR++ +RA DPLR+FTFDR+LV++ M
Sbjct:   67 LTYVTTLEECARAVSSLSEFNRIAVDCEGVALSRTGRLCLLQLASPNHLYLIDLVRDEPDHARAMFEQGGLKHLLQNPKVYKVIHDCRHDSDALYHQFGVKLAAVIDTQVVFAVLRKARGMPEGLPVSLKTLLKKFTSATEDELGMKNAIKTSMQGDDDFWLRRPLSQEALQYARLDVEHLLSITSTLSRYIRTADPNAWKIVLKRSQFHVTVFRDDEHGPRKAQQQYEHMARIARRQRLAFTAEKRIEKLRATDPLRSFTFDRSLVVQLM 337          
BLAST of Gvermi11523.t1 vs. uniprot
Match: R7QTP1_CHOCR (3'-5' exonuclease domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTP1_CHOCR)

HSP 1 Score: 299 bits (766), Expect = 4.550e-97
Identity = 153/268 (57.09%), Postives = 193/268 (72.01%), Query Frame = 0
Query:    4 VCSVADCAAAVRALSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAWPTVLSQSHFYLTVFRDDEHGPRKAQRQYEQMARVARRERLALDAAKRLDNVRAADPLRNFTFDRALVLRAM 271
            V SV +C   V  LS F RVAVDCEGVALSR G+LCL+Q+AS   +F  D+V  D +H   +F+ GGL+RLLEN  + KVMHDCRHDSDALFHQFGV+LGPV+DTQVVF+ LR  RGM +GLPVS++TLLKKFT  SE  L +K A++  M GD + W RRPL   A+QYAR+DVEHLL +  LL  Y+  AD  AW TV  +S  Y+ V+RDDE GPRKAQ +Y++MAR+ARR+R   D  K++D  +  DP+R F+FD   V+ A+
Sbjct:  134 VSSVEECRRVVTRLSRFDRVAVDCEGVALSRKGKLCLVQVASVDGIFFFDVV--DEKHGRQIFEEGGLRRLLENDRVSKVMHDCRHDSDALFHQFGVRLGPVVDTQVVFSELRKARGMEEGLPVSMRTLLKKFTGASEEDLVVKVAVRDQMSGDKELWQRRPLGEKAMQYARIDVEHLLFLEELLRGYLFDADRKAWETVREKSTEYVMVYRDDEDGPRKAQVRYDEMARMARRQRSKADKQKKMDMHQRTDPMRKFSFDAPKVVEAL 399          
BLAST of Gvermi11523.t1 vs. uniprot
Match: A0A7S3EQ64_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EQ64_9RHOD)

HSP 1 Score: 169 bits (427), Expect = 1.890e-47
Identity = 98/221 (44.34%), Postives = 135/221 (61.09%), Query Frame = 0
Query:   23 VAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKF--TSVSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAWPTVLSQSHFYLTVFRDDEHGPRKAQRQYEQMARVARRERLA 241
            +A+DCEG ALSRTGRLCL+Q+AS    ++ D+++        +F  GG+  LLE+  I KV+HDCR DSDAL+ QF VKL  V DTQV +   R  +G+   +PV LKTLL+ F  T+V E +L  K +IKS  + +   W +RPL   A+ YA+ D+EHLL V N   KY+    P A   V +++  YL  FR DE GP KA+ ++ +M    + ER A
Sbjct:   22 LALDCEGTALSRTGRLCLVQIASRKKAYLFDVIAIGGE----LFTAGGIGPLLESETIVKVVHDCRQDSDALYWQFNVKLANVFDTQVAYTAWREQKGIETTIPVGLKTLLRTFSVTTVEEENL--KASIKSQFQDNPKLWEQRPLPTEAITYAKFDIEHLLNVYNQFKKYLQ---PEANEKVNARTLEYLDEFRMDEQGPAKARARFTKMVEKVQEEREA 233          
BLAST of Gvermi11523.t1 vs. uniprot
Match: M2XBK0_GALSU (3'-5' exonuclease domain-containing protein / KH domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XBK0_GALSU)

HSP 1 Score: 149 bits (377), Expect = 2.670e-40
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 0
Query:   23 VAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTS--VSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAW--PTVLSQSHFYLTVFRDDEHGPRKAQRQYEQM 231
            +AVDCEGV LSR G+LCLLQ+++    F+ D+ +        +F  G  K +LE+  I KV HDCR+DSDAL+  +GV+L  V+DTQV F +LR  +G  + LPV   TLL++F +  +S   L +K   K+    D +FWLRRP+  +AL YA  DV+ LL +A  + + +     + W    V+ +S  Y+  +RDDE G  KA+ ++ Q+
Sbjct:   32 IAVDCEGVNLSRDGKLCLLQVSTGTKTFIFDVCALQKE----LFLTG-FKEILESERILKVFHDCRYDSDALWWLYGVRLRNVLDTQVAFRILREQQGYTRQLPVKFITLLRRFVNQEISPQTLELKRTFKNRFSQDRNFWLRRPIPKDALVYAAYDVKKLLEIATNILRNL-----SEWNRKRVMDESEIYVMAYRDDEEGALKARMEFGQI 234          
BLAST of Gvermi11523.t1 vs. uniprot
Match: A0A1X6PJN6_PORUM (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJN6_PORUM)

HSP 1 Score: 148 bits (373), Expect = 1.890e-39
Identity = 90/225 (40.00%), Postives = 125/225 (55.56%), Query Frame = 0
Query:   17 LSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAWPTVLSQSHFYLTVFRDDEHGP--RKAQRQYEQMARVARRER 239
            L+    +AVDCEGVALSRTGRLCL+Q+ASP   +V D         AL    G +  LL++  + K+MHDCRHD+DAL HQ GV+L  V DTQV +++L    G    LPVSL TLLKKF   S   + +K A+K+    D   W  RPL  +AL YA +DV+HL  V    ++ +   D      + + S  Y   +R+   G     A+R++ ++  +A   R
Sbjct:   44 LATHPTLAVDCEGVALSRTGRLCLVQIASPTRAYVFDTAVCP---TAL----GPVAPLLQDAAVTKLMHDCRHDADALAHQAGVRLAGVRDTQVAYSLLVAQAGHAHSLPVSLATLLKKFAPASTADVALKAAVKARFVADAGLWAARPLDADALAYAVVDVQHLFGV---YARVVGGLDAGGRSRLPAASDAYCRAYREGAEGAGAAAAKREFTRLVALANERR 258          
BLAST of Gvermi11523.t1 vs. uniprot
Match: A0A2A9MNT4_9APIC (3'-5' exonuclease domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MNT4_9APIC)

HSP 1 Score: 121 bits (304), Expect = 1.400e-27
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 0
Query:   23 VAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHS 194
            VA+DCEGVAL R GR+C +QLA+  H  ++D          ++ ++  LK +LE+P I KV HDCR D+ ALFHQ G++L  V DTQV   VL   R        SL  LL+ F ++ +H +  +   K +M  D   W  RPLS + L+YA   V HLL +A++L+ ++ S
Sbjct:  347 VALDCEGVALGRFGRVCTVQLATASHTLLLDAFKTG-----IVGENPKLKEILESPHIVKVCHDCREDASALFHQHGIRLRNVFDTQVAHQVLCE-RDGEAPFQASLTELLRSFLNLRDHGVSAQ--AKRAMEADPSVWCGRPLSTDLLRYAVFGVSHLLDLAHVLAFHLGS 510          
BLAST of Gvermi11523.t1 vs. uniprot
Match: L8GZC6_ACACA (3'5' exonuclease domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZC6_ACACA)

HSP 1 Score: 119 bits (299), Expect = 4.030e-27
Identity = 58/135 (42.96%), Postives = 87/135 (64.44%), Query Frame = 0
Query:    4 VCSVADCAAAVRALSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTS 138
            V  + +C   V  L+  + +AVDCEGV LSR G LCL+Q+ +   V++VD++     H   +F+ GGL+ LLE+  + KV+HDCR DSDA++HQ+GV L  V DTQ+ +AV++   G    LPV L T+L+ + +
Sbjct:  165 VSQIEECREMVAELTKLEVIAVDCEGVNLSREGELCLVQIGTESKVYLVDVLE----HGRALFEEGGLRALLESTKVRKVLHDCRGDSDAMYHQYGVALQNVFDTQIAYAVIKRQMGQGTPLPVGLNTVLRAYAT 295          
BLAST of Gvermi11523.t1 vs. uniprot
Match: A0A2D8QN62_9GAMM (3'-5' exonuclease domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D8QN62_9GAMM)

HSP 1 Score: 113 bits (282), Expect = 2.820e-25
Identity = 74/217 (34.10%), Postives = 120/217 (55.30%), Query Frame = 0
Query:   14 VRALSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRG-MPKGLPVSLKTLLKKFTSVSEHHLC--MKNAIKSSMRG--DDDFWLRRPLSPNALQYARLD------VEHLLPVANLLSKYIHSADPAAW-PTVLSQSHFYLTVFRDDE 218
            V  L   K +A DCEGV LSRTG++ LLQ+A P  +F++D+++A  +    +F  GGLK ++++ +I K+ +D R DSDALFHQ  V L  V+D Q++   +R   G + + LP   KT+ ++ T+ +E  +C  +K  +K+      D D W RRPL+ +A +YA LD      + H +      + ++      +W   VL  S   +  ++D E
Sbjct:  176 VNELKQSKVIAYDCEGVRLSRTGKITLLQIAIPEKIFLIDVMTAGGKE---IFVEGGLKEIIQSEEILKLAYDVRMDSDALFHQHDVLLKNVLDLQLLDIAIRRAAGTLVEYLPSLSKTVNRRLTN-AEILVCEDLKKRVKNMYTSIEDGDLWARRPLTDDARRYAALDAWILMKLNHAMRPNGTTASHLFPGFDESWNERVLDASRKRIDEYKDKE 388          
BLAST of Gvermi11523.t1 vs. uniprot
Match: F0VIV2_NEOCL (Exonuclease 3'-5' domain-like-containing protein 1, related n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VIV2_NEOCL)

HSP 1 Score: 111 bits (278), Expect = 5.060e-25
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 0
Query:   23 VAVDCEGVALSRTGRLCLLQLASPHHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSAD 196
            VA+DCEGVAL R GR+C +Q+A+  H  ++D          ++  +  LK +LE+P I KV HDCR D+ AL HQ  ++L  V DTQV   +    +G  +    SL  L + F ++ +  +  +   KS+M  D   W +RPL  + L+YA   V HLL +A++L+ ++ S +
Sbjct:   78 VALDCEGVALGRFGRMCTVQIATSTHTLLLDAFKTG-----VVGGNKKLKEILESPHIVKVCHDCREDASALLHQHTIRLRNVFDTQVAHQIWSEQKGETR-FQASLSELFRSFLNLRDGGVAKQ--AKSAMEADPSVWCQRPLPTDLLRYAVFGVSHLLDLAHILAFHLSSCN 243          
BLAST of Gvermi11523.t1 vs. uniprot
Match: A0A1Y1I9J8_KLENI (Ribonuclease H-like domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I9J8_KLENI)

HSP 1 Score: 114 bits (285), Expect = 5.660e-25
Identity = 79/185 (42.70%), Postives = 101/185 (54.59%), Query Frame = 0
Query:   12 AAVRALSAFKRVAVDCEGVALSRTGRLCLLQLASP---HHVFVVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGVKLGPVIDTQVVFAVL---------RTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAIKSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPV 184
            AAV++++    +A+DCEG  LSRTGRLCL+Q+A P   H V++ DLVS D      + Q  G   +LE+  + KV+HDCR DSDALFHQ G++L  V DTQ  +  L          T R +P  LP  L  LLK++T         K   K  M  D   W +RPLS   LQYA  DV  L  V
Sbjct:  220 AAVQSIAQHSTIAIDCEGCNLSRTGRLCLVQVALPPPKHCVYLFDLVSMDSDTLEALKQSLGT--ILEDRSVTKVIHDCRQDSDALFHQLGIRLDGVFDTQASYVALVKVLKAQACSTSRFVP--LP-GLNQLLKEYTGKENS---AKQDGKVLMERDPSIWEKRPLSFVLLQYAAQDVMGLFAV 396          
The following BLAST results are available for this feature:
BLAST of Gvermi11523.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWT0_9FLOR8.230e-13570.85PiRNA biogenesis protein EXD1 n=1 Tax=Gracilariops... [more]
R7QTP1_CHOCR4.550e-9757.093'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7S3EQ64_9RHOD1.890e-4744.34Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2XBK0_GALSU2.670e-4040.383'-5' exonuclease domain-containing protein / KH d... [more]
A0A1X6PJN6_PORUM1.890e-3940.003'-5' exonuclease domain-containing protein (Fragm... [more]
A0A2A9MNT4_9APIC1.400e-2740.703'-5' exonuclease domain-containing protein n=1 Ta... [more]
L8GZC6_ACACA4.030e-2742.963'5' exonuclease domain containing protein n=1 Tax... [more]
A0A2D8QN62_9GAMM2.820e-2534.103'-5' exonuclease domain-containing protein n=1 Ta... [more]
F0VIV2_NEOCL5.060e-2536.21Exonuclease 3'-5' domain-like-containing protein 1... [more]
A0A1Y1I9J8_KLENI5.660e-2542.70Ribonuclease H-like domain containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 1..193
e-value: 2.4E-15
score: 67.0
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 9..190
e-value: 7.7E-26
score: 90.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..232
e-value: 3.6E-45
score: 156.5
NoneNo IPR availablePANTHERPTHR46628PIRNA BIOGENESIS PROTEIN EXD1coord: 12..223
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:724696..725517 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11523.t1Gvermi11523.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 724696..725517 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi11523.t1 ID=Gvermi11523.t1|Name=Gvermi11523.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=274bp
LRYVCSVADCAAAVRALSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVF
VVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGV
KLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAI
KSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAW
PTVLSQSHFYLTVFRDDEHGPRKAQRQYEQMARVARRERLALDAAKRLDN
VRAADPLRNFTFDRALVLRAMQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf