Gvermi11534.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11534.t1
Unique NameGvermi11534.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length609
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:754256..756171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41851
PFAMsBT1
Max annot lvl2759|Eukaryota
Evalue8.42e-140
EggNOG OGs2CMRG@1|root,2QRK9@2759|Eukaryota
Descriptiontransporter
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11534Gvermi11534Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 754256..756171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11534.t1Gvermi11534.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 754256..756171 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11534.t1.stop1Gvermi11534.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 754256..754258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11534.t1.CDS1Gvermi11534.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 754256..755975 -
Gvermi11534.t1.CDS2Gvermi11534.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 756065..756171 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11534.t1.exon1Gvermi11534.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 754256..755975 -
Gvermi11534.t1.exon2Gvermi11534.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 756065..756171 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11534.t1.intron1Gvermi11534.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 755976..756064 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11534.t1.start1Gvermi11534.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 756169..756171 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11534.t1 ID=Gvermi11534.t1|Name=Gvermi11534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=609bp
MITSSRQFVNSIVANFGWHFALMLISVYIGLKGFIYQLALNTQLPFFKSL
GVTGDKYQSYGTVAQTPWALKAAIGLLSDTLPLLGFHKRSYIVLVSITGT
VAFAVLGSVHFTHVLAPFAAFLLLLGNLQLAAVDLLCEGKYAEMMVATPE
SGSDLVSFVWGLYMTGTFLGSLVAGPMADHFNPRYIWFVCLPFAAQVIFP
TLAGWLPEERLPPDQRHFRVDKVRKHPNLFKLSAVMTFGAVAVGLSALVG
SGYLQSIVSTTTSLILCVLGMLWLPRMLARANLYMFLSSLLYVSLPGALD
YWFTAADECVPGGPHFSFTYYVTYASLVGSVAGAIGVAVFQRYLSRGKFR
TAFWTTCLVKLAASAFDIAIVKRYNLSLGIPDKMAFLLGDAIIFQVAYTL
DFMPAVVLTSKVCPKGMEASVYALLASYQNLGSSVSRTLGVALIDRLNIK
TTSPCDFTNLPMAIVIAHVILPLLVFPLVFVLIPDAKMTDDLLEIVDEEH
GSQFIRVPSEEDTAELEPEDKGFKETASAQPDQPSSRATAIPVHTNSTHI
PNDQSLAHSNDDESLMSITPGTLREREAPEPVQTPGLPSSLVEEEEEEEE
EEVFQKKQ*
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spliced messenger RNA

>Gvermi11534.t1 ID=Gvermi11534.t1|Name=Gvermi11534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at ScGOVlb_3404:754256..756171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTACCTCATCGCGCCAATTTGTCAACTCCATCGTCGCCAACTTTGG
CTGGCATTTTGCCCTTATGCTCATTTCGGTCTACATCGGTCTCAAGGGCT
TTATCTACCAGCTTGCGCTCAACACCCAATTACCGTTCTTCAAGTCACTG
GGAGTCACCGGTGACAAGTACCAGTCCTACGGCACTGTGGCCCAGACCCC
ATGGGCGCTCAAGGCCGCCATCGGACTCTTGTCTGATACCCTTCCTCTTC
TTGGCTTTCACAAGCGCTCTTACATCGTCCTCGTCTCCATCACCGGCACT
GTAGCCTTTGCTGTGCTGGGCAGTGTGCACTTCACCCACGTCCTTGCCCC
GTTTGCCGCCTTTCTGCTCCTGCTCGGAAATCTTCAACTTGCCGCTGTCG
ATTTGTTGTGCGAAGGCAAGTATGCCGAGATGATGGTCGCCACGCCCGAA
AGCGGCAGTGACCTTGTGTCGTTTGTGTGGGGACTGTACATGACAGGCAC
TTTCTTAGGTTCGCTTGTGGCGGGGCCGATGGCCGACCATTTCAACCCGC
GCTACATTTGGTTCGTATGCCTCCCGTTCGCCGCCCAAGTCATTTTCCCC
ACCCTAGCTGGGTGGCTTCCAGAGGAGCGCCTGCCCCCCGACCAGCGCCA
TTTCAGGGTCGACAAGGTTCGCAAACATCCTAACTTGTTCAAGTTGTCCG
CCGTGATGACCTTCGGAGCGGTAGCCGTCGGACTCTCTGCCCTTGTTGGC
AGTGGCTATTTGCAGTCCATCGTGTCCACCACAACGTCATTGATCCTCTG
CGTTCTTGGCATGCTGTGGCTCCCTAGAATGCTCGCCCGAGCCAATCTTT
ACATGTTCCTCAGTAGTTTGTTGTACGTTTCTCTGCCTGGTGCGCTTGAT
TATTGGTTCACAGCCGCCGACGAGTGCGTTCCGGGCGGACCCCACTTTTC
CTTCACCTACTACGTTACGTACGCTTCTTTGGTGGGCAGCGTAGCTGGCG
CCATTGGTGTCGCTGTGTTTCAGCGCTATCTCAGCAGAGGCAAGTTTCGA
ACGGCCTTCTGGACCACATGTCTGGTCAAGCTGGCTGCATCTGCCTTTGA
CATTGCCATTGTTAAGAGGTATAATCTTTCCCTGGGAATTCCAGACAAGA
TGGCCTTTCTGTTAGGGGACGCTATCATTTTCCAGGTGGCCTACACACTC
GACTTTATGCCTGCAGTAGTACTCACTTCAAAGGTATGTCCTAAAGGTAT
GGAGGCCAGCGTCTATGCCTTGCTCGCTTCGTACCAAAACCTGGGGAGCA
GTGTATCGCGAACGCTCGGGGTCGCGCTAATCGACAGGCTTAACATCAAA
ACTACCTCACCTTGTGATTTCACAAATCTGCCCATGGCGATTGTCATCGC
TCACGTGATACTCCCGCTTCTTGTTTTCCCTCTCGTTTTCGTCTTGATTC
CCGACGCCAAAATGACAGACGACCTTCTCGAAATTGTTGATGAAGAACAT
GGCTCCCAATTTATTCGCGTTCCTTCCGAGGAAGACACGGCGGAACTCGA
ACCAGAAGACAAGGGCTTCAAAGAAACGGCATCTGCTCAACCTGATCAGC
CTTCATCGCGGGCAACGGCTATACCTGTTCACACTAACTCTACGCACATT
CCAAACGATCAGTCGCTCGCGCACAGTAATGACGACGAGTCTTTAATGTC
AATAACACCTGGAACTCTTCGGGAGCGAGAAGCACCAGAGCCCGTCCAGA
CACCGGGGCTTCCCTCAAGTTTGGTGGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGTATTTCAGAAGAAACAATAG
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protein sequence of Gvermi11534.t1

>Gvermi11534.t1 ID=Gvermi11534.t1|Name=Gvermi11534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=609bp
MITSSRQFVNSIVANFGWHFALMLISVYIGLKGFIYQLALNTQLPFFKSL
GVTGDKYQSYGTVAQTPWALKAAIGLLSDTLPLLGFHKRSYIVLVSITGT
VAFAVLGSVHFTHVLAPFAAFLLLLGNLQLAAVDLLCEGKYAEMMVATPE
SGSDLVSFVWGLYMTGTFLGSLVAGPMADHFNPRYIWFVCLPFAAQVIFP
TLAGWLPEERLPPDQRHFRVDKVRKHPNLFKLSAVMTFGAVAVGLSALVG
SGYLQSIVSTTTSLILCVLGMLWLPRMLARANLYMFLSSLLYVSLPGALD
YWFTAADECVPGGPHFSFTYYVTYASLVGSVAGAIGVAVFQRYLSRGKFR
TAFWTTCLVKLAASAFDIAIVKRYNLSLGIPDKMAFLLGDAIIFQVAYTL
DFMPAVVLTSKVCPKGMEASVYALLASYQNLGSSVSRTLGVALIDRLNIK
TTSPCDFTNLPMAIVIAHVILPLLVFPLVFVLIPDAKMTDDLLEIVDEEH
GSQFIRVPSEEDTAELEPEDKGFKETASAQPDQPSSRATAIPVHTNSTHI
PNDQSLAHSNDDESLMSITPGTLREREAPEPVQTPGLPSSLVEEEEEEEE
EEVFQKKQ*
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mRNA from alignment at ScGOVlb_3404:754256..756171-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11534.t1 ID=Gvermi11534.t1|Name=Gvermi11534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1916bp|location=Sequence derived from alignment at ScGOVlb_3404:754256..756171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTACCTCATCGCGCCAATTTGTCAACTCCATCGTCGCCAACTTTGG
CTGGCATTTTGCCCTTATGCTCATTTCGGTCTACATCGGTCTCAAGGGCT
TTATCTAGTGAGTAGAAATGCGCCAACATGTTCCCAACTCACACGTCACC
GCAAAAGCTTTGCTCTAACTTTCGCGCTGTGAGTCCCGTCATGCAGCCAG
CTTGCGCTCAACACCCAATTACCGTTCTTCAAGTCACTGGGAGTCACCGG
TGACAAGTACCAGTCCTACGGCACTGTGGCCCAGACCCCATGGGCGCTCA
AGGCCGCCATCGGACTCTTGTCTGATACCCTTCCTCTTCTTGGCTTTCAC
AAGCGCTCTTACATCGTCCTCGTCTCCATCACCGGCACTGTAGCCTTTGC
TGTGCTGGGCAGTGTGCACTTCACCCACGTCCTTGCCCCGTTTGCCGCCT
TTCTGCTCCTGCTCGGAAATCTTCAACTTGCCGCTGTCGATTTGTTGTGC
GAAGGCAAGTATGCCGAGATGATGGTCGCCACGCCCGAAAGCGGCAGTGA
CCTTGTGTCGTTTGTGTGGGGACTGTACATGACAGGCACTTTCTTAGGTT
CGCTTGTGGCGGGGCCGATGGCCGACCATTTCAACCCGCGCTACATTTGG
TTCGTATGCCTCCCGTTCGCCGCCCAAGTCATTTTCCCCACCCTAGCTGG
GTGGCTTCCAGAGGAGCGCCTGCCCCCCGACCAGCGCCATTTCAGGGTCG
ACAAGGTTCGCAAACATCCTAACTTGTTCAAGTTGTCCGCCGTGATGACC
TTCGGAGCGGTAGCCGTCGGACTCTCTGCCCTTGTTGGCAGTGGCTATTT
GCAGTCCATCGTGTCCACCACAACGTCATTGATCCTCTGCGTTCTTGGCA
TGCTGTGGCTCCCTAGAATGCTCGCCCGAGCCAATCTTTACATGTTCCTC
AGTAGTTTGTTGTACGTTTCTCTGCCTGGTGCGCTTGATTATTGGTTCAC
AGCCGCCGACGAGTGCGTTCCGGGCGGACCCCACTTTTCCTTCACCTACT
ACGTTACGTACGCTTCTTTGGTGGGCAGCGTAGCTGGCGCCATTGGTGTC
GCTGTGTTTCAGCGCTATCTCAGCAGAGGCAAGTTTCGAACGGCCTTCTG
GACCACATGTCTGGTCAAGCTGGCTGCATCTGCCTTTGACATTGCCATTG
TTAAGAGGTATAATCTTTCCCTGGGAATTCCAGACAAGATGGCCTTTCTG
TTAGGGGACGCTATCATTTTCCAGGTGGCCTACACACTCGACTTTATGCC
TGCAGTAGTACTCACTTCAAAGGTATGTCCTAAAGGTATGGAGGCCAGCG
TCTATGCCTTGCTCGCTTCGTACCAAAACCTGGGGAGCAGTGTATCGCGA
ACGCTCGGGGTCGCGCTAATCGACAGGCTTAACATCAAAACTACCTCACC
TTGTGATTTCACAAATCTGCCCATGGCGATTGTCATCGCTCACGTGATAC
TCCCGCTTCTTGTTTTCCCTCTCGTTTTCGTCTTGATTCCCGACGCCAAA
ATGACAGACGACCTTCTCGAAATTGTTGATGAAGAACATGGCTCCCAATT
TATTCGCGTTCCTTCCGAGGAAGACACGGCGGAACTCGAACCAGAAGACA
AGGGCTTCAAAGAAACGGCATCTGCTCAACCTGATCAGCCTTCATCGCGG
GCAACGGCTATACCTGTTCACACTAACTCTACGCACATTCCAAACGATCA
GTCGCTCGCGCACAGTAATGACGACGAGTCTTTAATGTCAATAACACCTG
GAACTCTTCGGGAGCGAGAAGCACCAGAGCCCGTCCAGACACCGGGGCTT
CCCTCAAGTTTGGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTATT
TCAGAAGAAACAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:754256..756171-

>Gvermi11534.t1 ID=Gvermi11534.t1|Name=Gvermi11534.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1827bp|location=Sequence derived from alignment at ScGOVlb_3404:754256..756171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTACCTCATCGCGCCAATTTGTCAACTCCATCGTCGCCAACTTTGG
CTGGCATTTTGCCCTTATGCTCATTTCGGTCTACATCGGTCTCAAGGGCT
TTATCTACCAGCTTGCGCTCAACACCCAATTACCGTTCTTCAAGTCACTG
GGAGTCACCGGTGACAAGTACCAGTCCTACGGCACTGTGGCCCAGACCCC
ATGGGCGCTCAAGGCCGCCATCGGACTCTTGTCTGATACCCTTCCTCTTC
TTGGCTTTCACAAGCGCTCTTACATCGTCCTCGTCTCCATCACCGGCACT
GTAGCCTTTGCTGTGCTGGGCAGTGTGCACTTCACCCACGTCCTTGCCCC
GTTTGCCGCCTTTCTGCTCCTGCTCGGAAATCTTCAACTTGCCGCTGTCG
ATTTGTTGTGCGAAGGCAAGTATGCCGAGATGATGGTCGCCACGCCCGAA
AGCGGCAGTGACCTTGTGTCGTTTGTGTGGGGACTGTACATGACAGGCAC
TTTCTTAGGTTCGCTTGTGGCGGGGCCGATGGCCGACCATTTCAACCCGC
GCTACATTTGGTTCGTATGCCTCCCGTTCGCCGCCCAAGTCATTTTCCCC
ACCCTAGCTGGGTGGCTTCCAGAGGAGCGCCTGCCCCCCGACCAGCGCCA
TTTCAGGGTCGACAAGGTTCGCAAACATCCTAACTTGTTCAAGTTGTCCG
CCGTGATGACCTTCGGAGCGGTAGCCGTCGGACTCTCTGCCCTTGTTGGC
AGTGGCTATTTGCAGTCCATCGTGTCCACCACAACGTCATTGATCCTCTG
CGTTCTTGGCATGCTGTGGCTCCCTAGAATGCTCGCCCGAGCCAATCTTT
ACATGTTCCTCAGTAGTTTGTTGTACGTTTCTCTGCCTGGTGCGCTTGAT
TATTGGTTCACAGCCGCCGACGAGTGCGTTCCGGGCGGACCCCACTTTTC
CTTCACCTACTACGTTACGTACGCTTCTTTGGTGGGCAGCGTAGCTGGCG
CCATTGGTGTCGCTGTGTTTCAGCGCTATCTCAGCAGAGGCAAGTTTCGA
ACGGCCTTCTGGACCACATGTCTGGTCAAGCTGGCTGCATCTGCCTTTGA
CATTGCCATTGTTAAGAGGTATAATCTTTCCCTGGGAATTCCAGACAAGA
TGGCCTTTCTGTTAGGGGACGCTATCATTTTCCAGGTGGCCTACACACTC
GACTTTATGCCTGCAGTAGTACTCACTTCAAAGGTATGTCCTAAAGGTAT
GGAGGCCAGCGTCTATGCCTTGCTCGCTTCGTACCAAAACCTGGGGAGCA
GTGTATCGCGAACGCTCGGGGTCGCGCTAATCGACAGGCTTAACATCAAA
ACTACCTCACCTTGTGATTTCACAAATCTGCCCATGGCGATTGTCATCGC
TCACGTGATACTCCCGCTTCTTGTTTTCCCTCTCGTTTTCGTCTTGATTC
CCGACGCCAAAATGACAGACGACCTTCTCGAAATTGTTGATGAAGAACAT
GGCTCCCAATTTATTCGCGTTCCTTCCGAGGAAGACACGGCGGAACTCGA
ACCAGAAGACAAGGGCTTCAAAGAAACGGCATCTGCTCAACCTGATCAGC
CTTCATCGCGGGCAACGGCTATACCTGTTCACACTAACTCTACGCACATT
CCAAACGATCAGTCGCTCGCGCACAGTAATGACGACGAGTCTTTAATGTC
AATAACACCTGGAACTCTTCGGGAGCGAGAAGCACCAGAGCCCGTCCAGA
CACCGGGGCTTCCCTCAAGTTTGGTGGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGTATTTCAGAAGAAACAATAG
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