Gvermi12367.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12367.t1
Unique NameGvermi12367.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length700
Homology
BLAST of Gvermi12367.t1 vs. uniprot
Match: R7QMF4_CHOCR (PBPb domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMF4_CHOCR)

HSP 1 Score: 404 bits (1039), Expect = 1.770e-129
Identity = 221/469 (47.12%), Postives = 283/469 (60.34%), Query Frame = 0
Query:  215 DNPYVKVDRTQRLGYNGIAISYLHKLQDALQFDLHVRRWNRTWSQFIDHMSGCVPPSLRKPADGRLPCECDVGIGSFTMTNERANRIQFVWPLSNEAHRMVSRRSDLLLDESDSRWFVFQTFSLDVWILVVACIVLHAVGTFFFGSHLANANQHVASDRSRSNTFSAFN-ILSHLKRFPATVLHSYAHLIGQPIHEEQMGTPSFHRSAWVVLGITTGLFLLTLYQASLTVLLFESKKTSPFRTLDDIIQCSIKPDRVAMVRGGASQDFWNKIVNTTFNRDNCKWSGRPVGITVSDLEEGFRFLTENKVDFFYSLEGSVVFRASINCRDFVPVGDPFFSTSVAFVLPSIHNETVRL--HLDNTTRFLREEDPFPTADALARDNSCGEEVQATITLEKLAAFSLMYVCSWLFLVLYRCVFLWRRRRKHQLQQEQDQQFAPKHLDDSLAPVSD----ISKSASTGPHRTFEV 676
            ++PY+  D+ +R  Y GIAI Y  +L+D L F    + WN  WS FI+ MS C P     P   +  C C +GIG+FTMTNER  +IQFVWPL NEAHRMV R+SDL  D S + WFVF TFSL VWI++   +V+HA+G+  FG       Q    D  RS T      I+  +K+FPA +L +YAHL+G P  EE  GTPSFHR+AW++LGIT GLFLLT+Y+ASLTVLLFES K S F+ L+DI  C++ P R+AM+ GGASQ FW+  VNTT  R +C   G+   +TV DL EGF  +  N+ DFFYSLEGS+V RA  NC  F PVG+PFFST+V FV+P       R+   L   TR LRE+D F +   LA  +SC + + A IT  KL AF +MY   W  L+LYR   L+  +RK +              DD L P  +    +     + P R FE 
Sbjct:   41 EDPYIIADQNRREQYRGIAIDYFRRLRDNLGFTAEFKEWNGNWSSFIETMSECEP---NVPDSNKNKCPCTIGIGAFTMTNERTEKIQFVWPLGNEAHRMVGRKSDLSSDNSQNTWFVFNTFSLQVWIIIAVGMVMHALGSLAFGPF-----QPSERDLPRSTTHRRRRGIMWRIKKFPAAILFAYAHLLGHPFGEESQGTPSFHRTAWLMLGITAGLFLLTIYEASLTVLLFESTKESAFQRLEDIKSCALDPSRIAMIAGGASQAFWHSAVNTTEVRKDCPQWGK-FSMTVEDLAEGFEAVKSNRADFFYSLEGSIVIRAQKNCDVFAPVGEPFFSTAVGFVMPKNIESLQRVLDELSRETRILREQDGFESVSVLADRSSCEDVIDARITPSKLWAFFVMYALCWGGLLLYRISRLYIMKRKEK--------------DDGLRPTPNQGDIVLMDVHSMPTRGFEA 486          
BLAST of Gvermi12367.t1 vs. uniprot
Match: A0A2V3IK74_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK74_9FLOR)

HSP 1 Score: 270 bits (689), Expect = 1.290e-79
Identity = 128/144 (88.89%), Postives = 135/144 (93.75%), Query Frame = 0
Query:    1 MPDMKIVYGDINKYARCGKVDVLIKPMSGRSACLGTVKIGPSQPGANGHTFIVIHAYVIHACTSGDYVDLTGLYKAFKCIREKFSKLRIAYPKIGEGLKGPSWAVICRTINSALKCCHHTVVVPKKKKCKPKECVEEEEECPEP 144
            MPDMKIVYGDI KYARCGKVD+L+KPMSGRSACLGTVKIGPSQPGANGHTFI IHAYVIHAC+SGDYVDLTGLYKAFKCIR++FSKLRIAYPKIGEGLKGPSWAVICRTINSALKCCHHT+VVPKKKK  P+  V  EE CPEP
Sbjct:    1 MPDMKIVYGDIRKYARCGKVDILVKPMSGRSACLGTVKIGPSQPGANGHTFITIHAYVIHACSSGDYVDLTGLYKAFKCIRDRFSKLRIAYPKIGEGLKGPSWAVICRTINSALKCCHHTLVVPKKKKPCPEPSVVPEEVCPEP 144          
The following BLAST results are available for this feature:
BLAST of Gvermi12367.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QMF4_CHOCR1.770e-12947.12PBPb domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3IK74_9FLOR1.290e-7988.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 209..332
e-value: 2.9E-6
score: 29.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 679..699
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 673..699
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 359..420
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 421..446
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 340..358
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..339
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 447..607
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 632..699
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 608..631
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 217..559
NoneNo IPR availableTMHMMTMhelixcoord: 422..444
NoneNo IPR availableTMHMMTMhelixcoord: 608..630
NoneNo IPR availableTMHMMTMhelixcoord: 341..363
IPR043472Macro domain-likeSUPERFAMILY52949Macro domain-likecoord: 6..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4376774..4381177 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12367.t1Gvermi12367.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4376774..4381177 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12367.t1 ID=Gvermi12367.t1|Name=Gvermi12367.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=700bp
MPDMKIVYGDINKYARCGKVDVLIKPMSGRSACLGTVKIGPSQPGANGHT
FIVIHAYVIHACTSGDYVDLTGLYKAFKCIREKFSKLRIAYPKIGEGLKG
PSWAVICRTINSALKCCHHTVVVPKKKKCKPKECVEEEEECPEPEPCPEP
EPCPEPEPCPEPEPCPEPEPCPEPEPCPEPEPRLPVTLLRRPRRGPILAR
SVAPARARAVLHRHDNPYVKVDRTQRLGYNGIAISYLHKLQDALQFDLHV
RRWNRTWSQFIDHMSGCVPPSLRKPADGRLPCECDVGIGSFTMTNERANR
IQFVWPLSNEAHRMVSRRSDLLLDESDSRWFVFQTFSLDVWILVVACIVL
HAVGTFFFGSHLANANQHVASDRSRSNTFSAFNILSHLKRFPATVLHSYA
HLIGQPIHEEQMGTPSFHRSAWVVLGITTGLFLLTLYQASLTVLLFESKK
TSPFRTLDDIIQCSIKPDRVAMVRGGASQDFWNKIVNTTFNRDNCKWSGR
PVGITVSDLEEGFRFLTENKVDFFYSLEGSVVFRASINCRDFVPVGDPFF
STSVAFVLPSIHNETVRLHLDNTTRFLREEDPFPTADALARDNSCGEEVQ
ATITLEKLAAFSLMYVCSWLFLVLYRCVFLWRRRRKHQLQQEQDQQFAPK
HLDDSLAPVSDISKSASTGPHRTFEVEFCSEPNSGSLNNDQSSPHLHSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043472Macro_dom-like